Experiment set43S568 for Pseudomonas putida KT2440

Compare to:

NaCl stress 25mM

200 most important genes:

  gene name fitness t score description  
PP_0164 -2.8 -5.7 conserved protein of unknown function compare
PP_1232 -2.5 -4.7 conserved exported protein of unknown function compare
PP_4902 -2.3 -1.6 Oligoribonuclease compare
PP_2145 -2.2 -3.8 beta-N-acetylglucosaminidase compare
PP_4943 -2.0 -2.6 putative Glycosyl transferase compare
PP_4994 -1.7 -2.7 conserved protein of unknown function compare
PP_2402 -1.6 -2.7 putative Sensor histidine kinase compare
PP_0809 -1.4 -4.6 disulfide bond formation protein B compare
PP_4261 -1.4 -4.4 cation-transporting P-type ATPase compare
PP_0127 -1.4 -2.4 Thiol:disulfide interchange protein compare
PP_4008 -1.4 -3.8 ATP-dependent serine protease compare
PP_4122 -1.4 -2.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4265 -1.3 -1.8 DNA-binding transcriptional dual regulator compare
PP_4941 -1.3 -3.9 conserved exported protein of unknown function compare
PP_0856 -1.3 -1.5 conserved lipoprotein of unknown function compare
PP_1898 -1.2 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1733 -1.2 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_4124 -1.2 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_4700 -1.2 -1.4 pantothenate synthetase compare
PP_4131 -1.2 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_1764 -1.2 -2.2 Phosphoglycolate phosphatase 2 compare
PP_0691 -1.2 -1.7 Glutamate 5-kinase compare
PP_0719 -1.2 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1318 -1.1 -4.5 Cytochrome b compare
PP_4342 -1.1 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_4271 -1.1 -1.6 conserved protein of unknown function compare
PP_4379 -1.1 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4880 -1.1 -5.9 exoribonuclease R compare
PP_1317 -1.1 -3.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4121 -1.1 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PP_1224 -1.1 -4.1 periplasmic subunit of the TolQRA transport system compare
PP_1268 -1.1 -2.5 putative HtrA suppressor protein sohA compare
PP_4058 -1.1 -6.2 1,4-alpha-glucan branching enzyme compare
PP_0888 -1.0 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_0504 -1.0 -4.0 Outer membrane protein OprG compare
PP_0833 -1.0 -1.1 queuine tRNA-ribosyltransferase compare
PP_5051 -1.0 -1.9 conserved protein of unknown function compare
PP_4895 -1.0 -2.0 tRNA dimethylallyltransferase compare
PP_4482 -1.0 -3.0 Transcriptional regulator, AraC family compare
PP_1186 -1.0 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_2336 -1.0 -3.0 aconitate hydratase 1 compare
PP_5327 -0.9 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_1319 -0.9 -3.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2976 -0.9 -2.2 putative transposase compare
PP_0339 -0.9 -1.9 Pyruvate dehydrogenase E1 component compare
PP_4263 -0.9 -2.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2322 -0.9 -3.1 Major outer membrane lipoprotein compare
PP_5328 -0.9 -1.0 putative phosphate transport system permease protein compare
PP_5162 -0.9 -2.8 conserved exported protein of unknown function compare
PP_0957 -0.9 -1.9 D-arabinose 5-phosphate isomerase compare
PP_1215 -0.9 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4130 -0.9 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4320 -0.9 -3.9 cytochrome c-type biogenesis protein compare
PP_4098 -0.9 -1.9 UvrABC system protein C compare
PP_0063 -0.8 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3312 -0.8 -1.5 putative Heat shock protein compare
PP_4993 -0.8 -2.3 Glutathione synthetase compare
PP_4066 -0.8 -2.7 methylglutaconyl-CoA hydratase compare
PP_0393 -0.8 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4836 -0.8 -2.1 conserved exported protein of unknown function compare
PP_4120 -0.8 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_1390 -0.8 -3.1 conserved exported protein of unknown function compare
PP_0405 -0.8 -3.8 conserved protein of unknown function compare
PP_2378 -0.8 -1.8 Fe/S biogenesis protein NfuA compare
PP_2144 -0.8 -3.0 Transcriptional regulator, TetR family compare
PP_3946 -0.8 -1.3 HTH-type transcriptional repressor NicR compare
PP_4581 -0.8 -2.6 putative amidotransferase compare
PP_4937 -0.8 -4.1 toluene tolerance protein compare
PP_0258 -0.7 -2.6 regulator of murein cross-linking compare
PP_4129 -0.7 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5329 -0.7 -1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4988 -0.7 -3.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1739 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_1217 -0.7 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2903 -0.7 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1322 -0.7 -1.6 putative Lipoprotein compare
PP_2773 -0.7 -1.8 conserved protein of unknown function compare
PP_3819 -0.7 -3.8 glutathione reductase (NADPH) compare
PP_0292 -0.7 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1994 -0.7 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_3241 -0.7 -1.3 conserved exported protein of unknown function compare
PP_5338 -0.7 -2.3 aspartate ammonia-lyase compare
PP_1734 -0.7 -1.8 Probable septum site-determining protein MinC compare
PP_4546 -0.7 -2.3 ATP-dependent helicase HrpA compare
PP_5557 -0.7 -2.2 protein of unknown function compare
PP_4875 -0.7 -2.5 conserved membrane protein of unknown function compare
PP_4475 -0.7 -3.3 succinylglutamate desuccinylase compare
PP_1355 -0.7 -3.4 Muropeptide permease AmpG compare
PP_5652 -0.7 -2.0 conserved protein of unknown function, phage origin compare
PP_3649 -0.7 -2.2 Transcriptional regulator, GntR family compare
PP_2088 -0.7 -2.1 RNA polymerase sigma factor SigX compare
PP_1999 -0.7 -1.7 membrane protein required for colicin V production compare
PP_5028 -0.7 -2.4 proline iminopeptidase compare
PP_3876 -0.7 -1.1 conserved protein of unknown function compare
PP_5706 -0.6 -1.3 Sec translocation complex - SecG subunit compare
PP_2214 -0.6 -2.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1054 -0.6 -1.6 Type II secretion pathway protein XcpZ compare
PP_2152 -0.6 -2.1 glycerophosphoryl diester phosphodiesterase compare
PP_4126 -0.6 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_0949 -0.6 -3.1 putative ATP-binding protein UPF0042 compare
PP_5491 -0.6 -1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_2153 -0.6 -2.5 conserved protein of unknown function compare
PP_2615 -0.6 -1.6 hemolysin-coregulated protein compare
PP_1568 -0.6 -1.1 conserved protein of unknown function compare
PP_1664 -0.6 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1493 -0.6 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0406 -0.6 -1.3 Nucleotidyltransferase family protein compare
PP_3102 -0.6 -1.8 conserved protein of unknown function compare
PP_4693 -0.6 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_0111 -0.6 -2.9 Electron transport protein SCO1/SenC compare
PP_5279 -0.6 -1.8 conserved protein of unknown function compare
PP_4785 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4253 -0.6 -1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_1237 -0.6 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2002 -0.6 -1.9 putative enzyme compare
PP_4838 -0.6 -4.1 Outer membrane copper receptor OprC compare
PP_1855 -0.6 -1.8 conserved exported protein of unknown function compare
PP_5198 -0.6 -1.8 conserved protein of unknown function compare
PP_2142 -0.6 -2.1 Cell division inhibitor SulA compare
PP_0887 -0.6 -2.8 Sensor histidine kinase compare
PP_4196 -0.6 -1.8 conserved exported protein of unknown function compare
PP_2379 -0.6 -2.2 putative cytochrome oxidase biogenesis protein compare
PP_5140 -0.6 -2.0 Transcriptional regulator, MerR family compare
PP_4238 -0.6 -1.2 conserved protein of unknown function compare
PP_0440 -0.5 -1.9 Elongation factor Tu-A compare
PP_4909 -0.5 -3.2 phosphoserine phosphatase compare
PP_1589 -0.5 -3.7 uridylyltransferase compare
PP_0630 -0.5 -1.1 DNA gyrase inhibitor YacG compare
PP_3647 -0.5 -1.9 putative Oxidoreductase compare
PP_4942 -0.5 -1.2 conserved protein of unknown function compare
PP_5580 -0.5 -1.7 protein of unknown function compare
PP_0512 -0.5 -1.7 hypothetical protein compare
PP_1198 -0.5 -1.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1216 -0.5 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0291 -0.5 -1.9 conserved protein of unknown function compare
PP_2337 -0.5 -1.4 aconitate isomerase compare
PP_0182 -0.5 -2.1 conserved protein of unknown function compare
PP_2118 -0.5 -1.6 conserved protein of unknown function compare
PP_1635 -0.5 -1.9 DNA-binding response regulator compare
PP_4143 -0.5 -2.2 conserved protein of unknown function compare
PP_4424 -0.5 -1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2510 -0.5 -1.6 conserved protein of unknown function compare
PP_1208 -0.5 -1.3 conserved protein of unknown function, SlyX family compare
PP_5294 -0.5 -2.7 Ribonuclease PH compare
PP_1528 -0.5 -1.1 conserved protein of unknown function compare
PP_4697 -0.5 -1.8 poly(A) polymerase compare
PP_0789 -0.5 -1.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3892 -0.5 -1.2 conserved protein of unknown function compare
PP_5350 -0.5 -1.6 Transcriptional regulator, RpiR family compare
PP_3519 -0.5 -1.1 putative Lipoprotein compare
PP_1646 -0.5 -2.1 putative Thioredoxin compare
PP_2028 -0.5 -2.6 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5508 -0.5 -1.1 conserved protein of unknown function compare
PP_2668 -0.5 -1.6 ABC efflux transporter, ATP-binding protein compare
PP_4250 -0.5 -3.0 cytochrome c oxidase subunit I, cbb3-type compare
PP_2355 -0.5 -2.5 Response regulator receiver protein compare
PP_4980 -0.5 -2.8 ATP-dependent RNA helicase compare
PP_5295 -0.5 -1.4 conserved protein of unknown function compare
PP_4204 -0.5 -1.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0002 -0.5 -2.8 probable chromosome partition protein compare
PP_5322 -0.5 -2.4 putative metal ion transporter compare
PP_1004 -0.5 -1.7 conserved protein of unknown function compare
PP_5552 -0.5 -1.5 conserved protein of unknown function compare
PP_0697 -0.5 -2.7 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4684 -0.5 -2.4 conserved protein of unknown function with kinase-like domain compare
PP_3064 -0.5 -1.5 Phage tail protein compare
PP_2581 -0.5 -0.9 conserved protein of unknown function compare
PP_3048 -0.5 -1.4 conserved protein of unknown function compare
PP_0346 -0.5 -2.6 putative Heptose kinase WapQ compare
PP_4260 -0.4 -1.6 conserved protein of unknown function compare
PP_2215 -0.4 -1.8 acetyl-CoA acetyltransferase compare
PP_1489 -0.4 -1.7 CheW domain protein compare
PP_0832 -0.4 -1.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2847 -0.4 -1.0 Urease accessory protein UreJ compare
PP_0846 -0.4 -0.5 DnaK-like molecular chaperone specific for IscU compare
PP_5107 -0.4 -2.1 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_5309 -0.4 -2.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2207 -0.4 -2.2 conserved membrane protein of unknown function compare
PP_2928 -0.4 -2.8 Saccharopine dehydrogenase compare
PP_4989 -0.4 -1.7 Protein PilJ compare
PP_4227 -0.4 -1.1 conserved protein of unknown function compare
PP_0872 -0.4 -2.5 Peptide chain release factor 3 compare
PP_0416 -0.4 -2.4 Phosphoglycolate phosphatase compare
PP_1986 -0.4 -1.4 3-isopropylmalate dehydratase small subunit compare
PP_1979 -0.4 -1.5 putative Hydrolase compare
PP_3875 -0.4 -2.0 conserved protein of unknown function compare
PP_4944 -0.4 -1.2 Carbamoyltransferase compare
PP_5202 -0.4 -1.2 putative cell division protein compare
PP_3018 -0.4 -2.1 conserved protein of unknown function compare
PP_1274 -0.4 -2.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4199 -0.4 -0.9 putative Lipoprotein compare
PP_4102 -0.4 -1.7 conserved protein of unknown function compare
PP_2073 -0.4 -1.6 Acetyltransferase, GNAT family compare
PP_4843 -0.4 -2.3 putative Urea ABC transporter, permease protein compare
PP_4828 -0.4 -0.8 Precorrin-8X methylmutase compare
PP_2631 -0.4 -1.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2087 -0.4 -1.0 CmpX protein compare
PP_2429 -0.4 -1.2 putative Membrane protein compare
PP_1871 -0.4 -2.3 Protease HtpX compare
PP_0065 -0.4 -1.3 NAD-binding component of TrK potassium transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Sodium Chloride across organisms