Experiment set43S567 for Pseudomonas putida KT2440

Compare to:

LB_noSalt 37C

200 most important genes:

  gene name fitness t score description  
PP_1237 -3.0 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1224 -2.8 -6.9 periplasmic subunit of the TolQRA transport system compare
PP_4342 -2.6 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_0293 -2.6 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4008 -2.5 -3.4 ATP-dependent serine protease compare
PP_2322 -2.4 -5.2 Major outer membrane lipoprotein compare
PP_4122 -2.2 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4994 -2.2 -2.5 conserved protein of unknown function compare
PP_4004 -2.2 -5.4 DNA translocase FtsK compare
PP_1232 -2.1 -4.4 conserved exported protein of unknown function compare
PP_1898 -2.0 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_1764 -1.9 -3.0 Phosphoglycolate phosphatase 2 compare
PP_4804 -1.7 -1.2 RlpA-like lipoprotein compare
PP_1428 -1.7 -4.5 Sigma factor AlgU negative regulatory protein compare
PP_5327 -1.6 -3.1 putative phosphate ABC transporter, permease subunit compare
PP_4263 -1.6 -3.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4902 -1.5 -1.7 Oligoribonuclease compare
PP_0691 -1.5 -1.7 Glutamate 5-kinase compare
PP_5162 -1.5 -3.9 conserved exported protein of unknown function compare
PP_4940 -1.5 -6.2 Putative glycosyltransferase compare
PP_0856 -1.4 -1.0 conserved lipoprotein of unknown function compare
PP_0339 -1.4 -2.5 Pyruvate dehydrogenase E1 component compare
PP_2336 -1.4 -3.8 aconitate hydratase 1 compare
PP_4726 -1.4 -2.6 Chaperone protein DnaJ compare
PP_2217 -1.4 -3.4 enoyl-CoA hydratase compare
PP_0435 -1.4 -3.7 Peptidase, M23/M37 family compare
PP_2337 -1.3 -2.8 aconitate isomerase compare
PP_4895 -1.3 -2.2 tRNA dimethylallyltransferase compare
PP_0809 -1.3 -4.2 disulfide bond formation protein B compare
PP_4880 -1.3 -6.3 exoribonuclease R compare
PP_4120 -1.2 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_4989 -1.2 -3.9 Protein PilJ compare
PP_0832 -1.2 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0593 -1.2 -1.6 putative ribosome-binding factor compare
PP_1319 -1.2 -4.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2214 -1.2 -4.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4121 -1.2 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4943 -1.2 -2.0 putative Glycosyl transferase compare
PP_4129 -1.2 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0719 -1.2 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0841 -1.2 -3.6 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_3821 -1.2 -6.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4785 -1.2 -3.6 conserved exported protein of unknown function compare
PP_0852 -1.2 -3.6 Transcriptional regulator, Cro/CI family compare
PP_5028 -1.1 -3.7 proline iminopeptidase compare
PP_0833 -1.1 -1.3 queuine tRNA-ribosyltransferase compare
PP_4993 -1.1 -3.0 Glutathione synthetase compare
PP_4941 -1.1 -3.4 conserved exported protein of unknown function compare
PP_2320 -1.1 -6.7 conserved exported protein of unknown function compare
PP_1733 -1.1 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1208 -1.1 -2.3 conserved protein of unknown function, SlyX family compare
PP_4253 -1.1 -2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_1214 -1.1 -2.4 putative transcriptional regulatory protein compare
PP_4937 -1.1 -4.7 toluene tolerance protein compare
PP_4131 -1.1 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_2378 -1.1 -2.3 Fe/S biogenesis protein NfuA compare
PP_4098 -1.1 -2.3 UvrABC system protein C compare
PP_1198 -1.1 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4700 -1.1 -1.4 pantothenate synthetase compare
PP_4009 -1.1 -3.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_2044 -1.1 -2.5 conserved inner membrane protein of unknown function compare
PP_0434 -1.0 -2.7 Anhydro-N-acetylmuramic acid kinase compare
PP_0406 -1.0 -1.9 Nucleotidyltransferase family protein compare
PP_0292 -1.0 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0753 -1.0 -4.8 putative Lipoprotein compare
PP_5295 -1.0 -2.6 conserved protein of unknown function compare
PP_0439 -1.0 -4.4 conserved protein of unknown function compare
PP_1216 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4722 -1.0 -3.5 Transcription elongation factor GreA compare
PP_4130 -1.0 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4058 -1.0 -5.8 1,4-alpha-glucan branching enzyme compare
PP_0393 -1.0 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4261 -0.9 -3.4 cation-transporting P-type ATPase compare
PP_5329 -0.9 -1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1430 -0.9 -5.9 putative periplasmic serine endoprotease DegP-like compare
PP_0504 -0.9 -3.6 Outer membrane protein OprG compare
PP_4143 -0.9 -3.3 conserved protein of unknown function compare
PP_2331 -0.9 -3.8 conserved membrane protein of unknown function compare
PP_5183 -0.9 -4.3 glutamylpolyamine synthetase compare
PP_4320 -0.9 -4.0 cytochrome c-type biogenesis protein compare
PP_0001 -0.9 -1.2 probable chromosome-partitioning protein compare
PP_1513 -0.9 -2.5 Ribosomal RNA small subunit methyltransferase J compare
PP_4124 -0.9 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_5084 -0.9 -6.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4475 -0.9 -4.2 succinylglutamate desuccinylase compare
PP_4265 -0.9 -1.4 DNA-binding transcriptional dual regulator compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_2107 -0.9 -1.6 conserved protein of unknown function compare
PP_3819 -0.8 -4.4 glutathione reductase (NADPH) compare
PP_0735 -0.8 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_1217 -0.8 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5000 -0.8 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_4696 -0.8 -3.4 Nitrogen regulation protein NR(I) compare
PP_2144 -0.8 -3.1 Transcriptional regulator, TetR family compare
PP_4988 -0.8 -3.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0949 -0.8 -3.8 putative ATP-binding protein UPF0042 compare
PP_1999 -0.8 -1.9 membrane protein required for colicin V production compare
PP_1355 -0.8 -3.7 Muropeptide permease AmpG compare
PP_0630 -0.8 -1.4 DNA gyrase inhibitor YacG compare
PP_4836 -0.8 -2.0 conserved exported protein of unknown function compare
PP_t10 -0.8 -1.3 tRNA-Pro compare
PP_0123 -0.8 -5.0 DNA polymerase I, 5 compare
PP_4793 -0.8 -2.0 conserved protein of unknown function compare
PP_1097 -0.8 -0.9 Methionine--tRNA ligase compare
PP_5324 -0.8 -2.1 Response regulator compare
PP_2402 -0.8 -1.6 putative Sensor histidine kinase compare
PP_4693 -0.8 -2.1 RNA polymerase-binding transcription factor DksA compare
PP_4942 -0.8 -1.5 conserved protein of unknown function compare
PP_4837 -0.8 -2.1 conserved protein of unknown function compare
PP_1322 -0.8 -1.2 putative Lipoprotein compare
PP_0119 -0.7 -2.0 putative zinc uptake regulation protein ZUR compare
PP_0405 -0.7 -3.5 conserved protein of unknown function compare
PP_1734 -0.7 -1.5 Probable septum site-determining protein MinC compare
PP_1912 -0.7 -2.9 Phosphate acyltransferase compare
PP_2142 -0.7 -2.4 Cell division inhibitor SulA compare
PP_5279 -0.7 -2.3 conserved protein of unknown function compare
PP_0111 -0.7 -3.6 Electron transport protein SCO1/SenC compare
PP_2145 -0.7 -1.5 beta-N-acetylglucosaminidase compare
PP_5508 -0.7 -1.4 conserved protein of unknown function compare
PP_1800 -0.7 -4.8 Oxidoreductase Rmd compare
PP_5SB -0.7 -2.3 5S ribosomal RNA compare
PP_4684 -0.7 -3.4 conserved protein of unknown function with kinase-like domain compare
PP_0336 -0.7 -4.5 Peptide methionine sulfoxide reductase MsrA compare
PP_0846 -0.7 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_2510 -0.7 -1.3 conserved protein of unknown function compare
PP_0401 -0.7 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_2416 -0.7 -2.1 putative Iron ABC transporter, ATP-binding protein compare
PP_1776 -0.7 -5.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0625 -0.7 -4.8 Chaperone protein ClpB compare
PP_4266 -0.7 -2.7 Adenine phosphoribosyltransferase compare
PP_2330 -0.7 -2.1 conserved protein of unknown function compare
PP_5198 -0.7 -2.1 conserved protein of unknown function compare
PP_1344 -0.7 -1.0 conserved protein of unknown function compare
PP_2302 -0.7 -3.2 DNA-binding, ATP-dependent protease compare
PP_1318 -0.7 -2.8 Cytochrome b compare
PP_1384 -0.7 -4.3 Probable efflux pump outer membrane protein TtgC compare
PP_3999 -0.7 -2.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4560 -0.6 -2.2 putative Ribonuclease BN compare
PP_4179 -0.6 -4.2 Chaperone protein HtpG compare
PP_1215 -0.6 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_1317 -0.6 -2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2718 -0.6 -1.9 arsenic resistance transcriptional regulator compare
PP_3726 -0.6 -1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_4250 -0.6 -4.0 cytochrome c oxidase subunit I, cbb3-type compare
PP_5350 -0.6 -1.9 Transcriptional regulator, RpiR family compare
PP_0127 -0.6 -1.3 Thiol:disulfide interchange protein compare
PP_0984 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_1780 -0.6 -5.5 putative mannosyltransferase compare
PP_4066 -0.6 -2.0 methylglutaconyl-CoA hydratase compare
PP_4576 -0.6 -3.5 allophanate hydrolase subunit compare
PP_1268 -0.6 -1.6 putative HtrA suppressor protein sohA compare
PP_2031 -0.6 -1.6 conserved protein of unknown function compare
PP_2442 -0.6 -1.9 conserved protein of unknown function, DUF480 family compare
PP_5146 -0.6 -3.9 RNA pyrophosphohydrolase compare
PP_0082 -0.6 -2.8 tryptophan synthase alpha chain compare
PP_5423 -0.6 -1.9 conserved membrane protein of unknown function compare
PP_4787 -0.6 -1.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1629 -0.6 -3.2 Protein RecA compare
PP_4938 -0.6 -3.8 putative Glycosyl transferase compare
PP_3903 -0.6 -1.0 conserved protein of unknown function compare
PP_1802 -0.6 -4.8 glycosyl transferase compare
PP_1598 -0.6 -2.3 regulatory intramembrane protein RIP zinc protease compare
PP_2514 -0.6 -2.5 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_4681 -0.6 -2.2 conserved protein of unknown function compare
PP_2883 -0.6 -1.4 conserved protein of unknown function compare
PP_4697 -0.6 -1.4 poly(A) polymerase compare
PP_4505 -0.6 -2.7 Sensor histidine kinase compare
PP_5748 -0.6 -1.0 cytochrome c heme lyase subunit compare
PP_2341 -0.6 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4471 -0.6 -1.8 Magnesium transporter compare
PP_4875 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_4985 -0.6 -2.6 16S rRNA m3U1498 methyltransferase compare
PP_1779 -0.6 -2.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1231 -0.6 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5486 -0.6 -1.1 conserved protein of unknown function compare
PP_0258 -0.6 -2.0 regulator of murein cross-linking compare
PP_0683 -0.6 -1.6 conserved protein of unknown function compare
PP_0789 -0.6 -1.7 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1122 -0.5 -1.2 OmpA family protein compare
PP_5441 -0.5 -2.0 protein of unknown function compare
PP_1325 -0.5 -3.7 putative lipoprotein compare
PP_1736 -0.5 -1.9 conserved protein of unknown function compare
PP_0697 -0.5 -3.1 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5001 -0.5 -1.8 protease HslVU, ATPase component compare
PP_5322 -0.5 -2.7 putative metal ion transporter compare
PP_1752 -0.5 -2.8 conserved protein of unknown function compare
PP_5139 -0.5 -2.3 cadmium translocating P-type ATPase compare
PP_4259 -0.5 -3.5 Iron-sulfur cluster-binding protein compare
PP_1824 -0.5 -0.9 Smr domain protein compare
PP_4826 -0.5 -2.9 Precorrin-3B C17-methyltransferase compare
PP_1799 -0.5 -3.9 GDP-mannose 4,6-dehydratase compare
PP_4803 -0.5 -2.8 D-alanyl-D-alanine carboxypeptidase compare
PP_1801 -0.5 -3.7 Glycosyl transferase WbpY compare
PP_3730 -0.5 -1.2 Transcriptional regulatory protein AruR compare
PP_2307 -0.5 -1.6 conserved protein of unknown function compare
PP_2441 -0.5 -1.8 conserved protein of unknown function compare
PP_4936 -0.5 -3.0 O-antigen polymerase compare
PP_0959 -0.5 -1.5 phospholipid ABC transporter compare
PP_1008 -0.5 -1.6 RNA polymerase subunit sigma-24 compare
PP_1813 -0.5 -1.9 ComEA-related protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments