Experiment set43S521 for Pseudomonas putida KT2440

Compare to:

NaCl stress 85 mM

200 most important genes:

  gene name fitness t score description  
PP_2402 -2.8 -3.2 putative Sensor histidine kinase compare
PP_0888 -2.4 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_0164 -2.3 -5.7 conserved protein of unknown function compare
PP_1232 -2.3 -4.2 conserved exported protein of unknown function compare
PP_1898 -2.2 -1.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4129 -2.1 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4122 -2.0 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4120 -1.8 -3.7 NADH-quinone oxidoreductase subunit B compare
PP_1237 -1.8 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0127 -1.7 -2.7 Thiol:disulfide interchange protein compare
PP_1208 -1.7 -2.4 conserved protein of unknown function, SlyX family compare
PP_4828 -1.6 -1.9 Precorrin-8X methylmutase compare
PP_4902 -1.6 -1.8 Oligoribonuclease compare
PP_4253 -1.6 -3.3 cytochrome c oxidase subunit, cbb3-type compare
PP_4265 -1.5 -1.7 DNA-binding transcriptional dual regulator compare
PP_1734 -1.5 -2.7 Probable septum site-determining protein MinC compare
PP_4124 -1.4 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_4262 -1.4 -2.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0691 -1.4 -1.6 Glutamate 5-kinase compare
PP_1319 -1.4 -4.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4131 -1.4 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_0856 -1.4 -0.9 conserved lipoprotein of unknown function compare
PP_1783 -1.4 -2.1 dTDP-glucose pyrophosphorylase compare
PP_5313 -1.3 -2.8 DNA-binding protein HU-alpha compare
PP_4008 -1.3 -3.4 ATP-dependent serine protease compare
PP_4130 -1.3 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0406 -1.3 -2.0 Nucleotidyltransferase family protein compare
PP_4261 -1.3 -3.9 cation-transporting P-type ATPase compare
PP_4700 -1.2 -1.6 pantothenate synthetase compare
PP_2378 -1.2 -2.5 Fe/S biogenesis protein NfuA compare
PP_0809 -1.2 -4.0 disulfide bond formation protein B compare
PP_2429 -1.2 -2.5 putative Membrane protein compare
PP_4251 -1.2 -2.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4895 -1.2 -2.1 tRNA dimethylallyltransferase compare
PP_1317 -1.1 -3.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4121 -1.1 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4263 -1.1 -2.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0833 -1.1 -1.0 queuine tRNA-ribosyltransferase compare
PP_1764 -1.1 -2.1 Phosphoglycolate phosphatase 2 compare
PP_2903 -1.1 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3819 -1.1 -5.0 glutathione reductase (NADPH) compare
PP_1142 -1.1 -1.6 conserved protein of unknown function compare
PP_0566 -1.1 -1.1 translation-related factor compare
PP_4058 -1.1 -5.9 1,4-alpha-glucan branching enzyme compare
PP_4471 -1.1 -2.7 Magnesium transporter compare
PP_2280 -1.1 -1.5 conserved protein of unknown function compare
PP_4941 -1.1 -3.2 conserved exported protein of unknown function compare
PP_3580 -1.0 -1.1 conserved protein of unknown function compare
PP_0111 -1.0 -4.5 Electron transport protein SCO1/SenC compare
PP_5027 -1.0 -2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4994 -1.0 -1.6 conserved protein of unknown function compare
PP_4837 -1.0 -2.6 conserved protein of unknown function compare
PP_5162 -1.0 -2.8 conserved exported protein of unknown function compare
PP_5486 -1.0 -2.1 conserved protein of unknown function compare
PP_1994 -1.0 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_3434 -1.0 -2.6 conserved protein of unknown function compare
PP_5001 -1.0 -2.7 protease HslVU, ATPase component compare
PP_0339 -1.0 -1.7 Pyruvate dehydrogenase E1 component compare
PP_2336 -0.9 -2.7 aconitate hydratase 1 compare
PP_1062 -0.9 -2.5 MutT/nudix family protein compare
PP_5350 -0.9 -2.0 Transcriptional regulator, RpiR family compare
PP_4250 -0.9 -5.2 cytochrome c oxidase subunit I, cbb3-type compare
PP_3411 -0.9 -1.6 conserved protein of unknown function compare
PP_2337 -0.9 -1.7 aconitate isomerase compare
PP_0719 -0.9 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4684 -0.9 -3.9 conserved protein of unknown function with kinase-like domain compare
PP_3449 -0.9 -1.6 conserved exported protein of unknown function compare
PP_3903 -0.9 -1.6 conserved protein of unknown function compare
PP_4942 -0.9 -1.5 conserved protein of unknown function compare
PP_5329 -0.8 -1.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0001 -0.8 -1.1 probable chromosome-partitioning protein compare
PP_1428 -0.8 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_0872 -0.8 -4.3 Peptide chain release factor 3 compare
PP_4944 -0.8 -1.9 Carbamoyltransferase compare
PP_2044 -0.8 -1.7 conserved inner membrane protein of unknown function compare
PP_4143 -0.8 -2.9 conserved protein of unknown function compare
PP_4880 -0.8 -4.4 exoribonuclease R compare
PP_4793 -0.8 -2.0 conserved protein of unknown function compare
PP_4726 -0.8 -1.7 Chaperone protein DnaJ compare
PP_4804 -0.8 -1.0 RlpA-like lipoprotein compare
PP_1224 -0.8 -3.5 periplasmic subunit of the TolQRA transport system compare
PP_4098 -0.8 -1.7 UvrABC system protein C compare
PP_4260 -0.8 -2.6 conserved protein of unknown function compare
PP_0959 -0.8 -2.0 phospholipid ABC transporter compare
PP_2145 -0.8 -1.5 beta-N-acetylglucosaminidase compare
PP_4379 -0.8 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5168 -0.8 -2.5 sulfate/thiosulfate import ATP-binding protein compare
PP_1215 -0.8 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4989 -0.8 -2.6 Protein PilJ compare
PP_4475 -0.8 -3.5 succinylglutamate desuccinylase compare
PP_5575 -0.7 -1.9 conserved protein of unknown function compare
PP_1268 -0.7 -1.4 putative HtrA suppressor protein sohA compare
PP_4917 -0.7 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5143 -0.7 -1.7 conserved membrane protein of unknown function compare
PP_3384 -0.7 -2.5 gluconate 2-dehydrogenase gamma subunit compare
PP_4364 -0.7 -3.0 putative Anti-sigma F factor antagonist compare
PP_4693 -0.7 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_0276 -0.7 -0.9 Transcriptional regulator, Cro/CI family compare
PP_t13 -0.7 -1.9 tRNA-Lys compare
PP_4785 -0.7 -2.2 conserved exported protein of unknown function compare
PP_2107 -0.7 -1.4 conserved protein of unknown function compare
PP_4264 -0.7 -3.2 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2718 -0.7 -1.9 arsenic resistance transcriptional regulator compare
PP_5428 -0.7 -2.5 conserved exported protein of unknown function compare
PP_2442 -0.7 -1.9 conserved protein of unknown function, DUF480 family compare
PP_3245 -0.7 -1.5 conserved protein of unknown function compare
PP_0002 -0.7 -3.7 probable chromosome partition protein compare
PP_4993 -0.7 -1.8 Glutathione synthetase compare
PP_4500 -0.7 -2.6 TrpH family protein compare
PP_2132 -0.7 -2.7 Universal stress protein compare
PP_5557 -0.7 -1.8 protein of unknown function compare
PP_0065 -0.7 -2.0 NAD-binding component of TrK potassium transporter compare
PP_3999 -0.7 -2.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2582 -0.6 -2.8 putative Heme oxygenase compare
PP_4943 -0.6 -1.2 putative Glycosyl transferase compare
PP_2403 -0.6 -1.1 Chemotaxis protein CheY compare
PP_4879 -0.6 -2.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0678 -0.6 -3.6 conserved exported protein of unknown function compare
PP_5198 -0.6 -1.9 conserved protein of unknown function compare
PP_5051 -0.6 -1.3 conserved protein of unknown function compare
PP_5430 -0.6 -1.7 protein of unknown function compare
PP_3519 -0.6 -1.1 putative Lipoprotein compare
PP_0435 -0.6 -2.1 Peptidase, M23/M37 family compare
PP_0504 -0.6 -2.5 Outer membrane protein OprG compare
PP_5453 -0.6 -1.1 conserved protein of unknown function compare
PP_0258 -0.6 -2.1 regulator of murein cross-linking compare
PP_1355 -0.6 -2.9 Muropeptide permease AmpG compare
PP_1493 -0.6 -1.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5095 -0.6 -0.7 pyrroline-5-carboxylate reductase compare
PP_0593 -0.6 -0.9 putative ribosome-binding factor compare
PP_4722 -0.6 -2.0 Transcription elongation factor GreA compare
PP_0887 -0.6 -3.1 Sensor histidine kinase compare
PP_4342 -0.6 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_2144 -0.6 -1.9 Transcriptional regulator, TetR family compare
PP_2414 -0.6 -1.5 conserved exported protein of unknown function compare
PP_4204 -0.6 -1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1008 -0.6 -1.3 RNA polymerase subunit sigma-24 compare
PP_0753 -0.6 -2.8 putative Lipoprotein compare
PP_1752 -0.6 -2.8 conserved protein of unknown function compare
PP_1553 -0.6 -1.5 conserved protein of unknown function compare
PP_4320 -0.6 -2.3 cytochrome c-type biogenesis protein compare
PP_3040 -0.6 -2.0 Pyocin R2_PP, holin compare
PP_2147 -0.6 -1.8 conserved exported protein of unknown function compare
PP_5328 -0.6 -0.7 putative phosphate transport system permease protein compare
PP_0235 -0.6 -1.3 Peroxidase compare
PP_0846 -0.6 -0.7 DnaK-like molecular chaperone specific for IscU compare
PP_1099 -0.6 -1.2 Cold shock protein CapB compare
PP_0903 -0.6 -2.2 conserved protein of unknown function compare
PP_2813 -0.6 -2.1 BNR domain protein compare
PP_1716 -0.6 -1.4 Transcriptional regulator, Cro/CI family compare
PP_5382 -0.6 -2.2 putative exported protein compare
PP_1763 -0.6 -1.5 putative oxidoreductase compare
PP_4159 -0.6 -1.5 Potassium-transporting ATPase C chain compare
PP_2738 -0.6 -2.0 putative Transcriptional regulator compare
PP_1826 -0.6 -1.3 Hydrolase, isochorismatase family compare
PP_2907 -0.6 -1.6 DNA-binding response regulator compare
PP_4913 -0.5 -2.2 conserved protein of unknown function compare
PP_2456 -0.5 -2.3 D-ribose ABC transporter - permease subunit compare
PP_3512 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_4517 -0.5 -1.2 conserved protein of unknown function compare
PP_3238 -0.5 -2.1 putative Transcriptional regulator PyrR compare
PP_2568 -0.5 -0.9 Ring-cleaving dioxygenase compare
PP_0393 -0.5 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4803 -0.5 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PP_5028 -0.5 -1.8 proline iminopeptidase compare
PP_1629 -0.5 -2.6 Protein RecA compare
PP_2215 -0.5 -2.0 acetyl-CoA acetyltransferase compare
PP_2668 -0.5 -1.6 ABC efflux transporter, ATP-binding protein compare
PP_3821 -0.5 -3.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2302 -0.5 -2.4 DNA-binding, ATP-dependent protease compare
PP_0401 -0.5 -1.2 Ribosomal RNA small subunit methyltransferase A compare
PP_3105 -0.5 -1.5 conserved membrane protein of unknown function compare
PP_5359 -0.5 -0.9 CobW/P47K family protein compare
PP_2581 -0.5 -0.7 conserved protein of unknown function compare
PP_4162 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_3128 -0.5 -2.8 putative Exopolysaccharide biosynthesis/transport protein compare
PP_3427 -0.5 -2.2 Multidrug efflux RND outer membrane protein OprN compare
PP_0063 -0.5 -1.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4575 -0.5 -2.0 Urea amidolyase-related protein compare
PP_1352 -0.5 -2.0 UPF0234 protein PP_1352 compare
PP_5496 -0.5 -1.8 conserved exported protein of unknown function compare
PP_2858 -0.5 -1.4 conserved exported protein of unknown function compare
PP_1186 -0.5 -1.0 two component system DNA-binding transcriptional dual regulator compare
PP_4961 -0.5 -1.1 putative Lipoprotein compare
PP_3244 -0.5 -1.6 Magnesium transporter, MgtC family compare
PP_0697 -0.5 -2.7 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_1362 -0.5 -1.9 pyruvate kinase II compare
PP_3884 -0.5 -1.4 Phage holin, lambda family compare
PP_0274 -0.5 -0.6 putative transcriptional regulator containing HTH domain compare
PP_4094 -0.5 -0.9 conserved protein of unknown function compare
PP_2555 -0.5 -2.2 conserved protein of unknown function compare
PP_0949 -0.5 -2.3 putative ATP-binding protein UPF0042 compare
PP_4066 -0.5 -1.1 methylglutaconyl-CoA hydratase compare
PP_3559 -0.5 -1.8 glycine betaine ABC transporter (permease) compare
PP_4207 -0.5 -1.4 conserved protein of unknown function compare
PP_3064 -0.5 -0.9 Phage tail protein compare
PP_3473 -0.5 -2.1 curli secretion and assembly outer membrane associated component compare
PP_4829 -0.5 -1.2 putative precorrin-3B synthase compare
PP_5327 -0.5 -1.2 putative phosphate ABC transporter, permease subunit compare
PP_0082 -0.5 -2.0 tryptophan synthase alpha chain compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Sodium Chloride across organisms