Experiment set43S520 for Pseudomonas putida KT2440

Compare to:

NaCl stress 25mM

200 most important genes:

  gene name fitness t score description  
PP_1237 -2.6 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1232 -2.5 -4.6 conserved exported protein of unknown function compare
PP_0164 -2.4 -6.6 conserved protein of unknown function compare
PP_4874 -2.3 -1.5 50S ribosomal protein L9 compare
PP_1764 -1.8 -2.9 Phosphoglycolate phosphatase 2 compare
PP_4129 -1.8 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4993 -1.7 -3.8 Glutathione synthetase compare
PP_4700 -1.7 -1.2 pantothenate synthetase compare
PP_4008 -1.5 -3.8 ATP-dependent serine protease compare
PP_2337 -1.5 -2.9 aconitate isomerase compare
PP_0856 -1.4 -1.3 conserved lipoprotein of unknown function compare
PP_0809 -1.4 -4.5 disulfide bond formation protein B compare
PP_2217 -1.4 -3.3 enoyl-CoA hydratase compare
PP_4124 -1.3 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_1319 -1.3 -4.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5350 -1.3 -3.3 Transcriptional regulator, RpiR family compare
PP_1898 -1.3 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4120 -1.2 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_4941 -1.2 -3.9 conserved exported protein of unknown function compare
PP_0339 -1.2 -1.8 Pyruvate dehydrogenase E1 component compare
PP_4121 -1.2 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PP_2088 -1.2 -3.3 RNA polymerase sigma factor SigX compare
PP_4895 -1.2 -2.2 tRNA dimethylallyltransferase compare
PP_0127 -1.1 -2.1 Thiol:disulfide interchange protein compare
PP_3926 -1.1 -2.1 short-chain dehydrogenase compare
PP_5328 -1.1 -1.0 putative phosphate transport system permease protein compare
PP_3519 -1.1 -1.9 putative Lipoprotein compare
PP_4994 -1.1 -1.9 conserved protein of unknown function compare
PP_5329 -1.0 -1.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4261 -1.0 -3.6 cation-transporting P-type ATPase compare
PP_4828 -1.0 -1.6 Precorrin-8X methylmutase compare
PP_5095 -1.0 -1.1 pyrroline-5-carboxylate reductase compare
PP_2378 -1.0 -2.1 Fe/S biogenesis protein NfuA compare
PP_0888 -1.0 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_0406 -1.0 -1.8 Nucleotidyltransferase family protein compare
PP_4342 -1.0 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_0111 -1.0 -4.7 Electron transport protein SCO1/SenC compare
PP_1215 -1.0 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4126 -0.9 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_2402 -0.9 -1.9 putative Sensor histidine kinase compare
PP_5483 -0.9 -2.4 conserved protein of unknown function compare
PP_4880 -0.9 -5.2 exoribonuclease R compare
PP_1318 -0.9 -3.8 Cytochrome b compare
PP_2145 -0.9 -1.8 beta-N-acetylglucosaminidase compare
PP_2144 -0.9 -3.2 Transcriptional regulator, TetR family compare
PP_4482 -0.9 -2.6 Transcriptional regulator, AraC family compare
PP_3819 -0.9 -4.6 glutathione reductase (NADPH) compare
PP_4263 -0.9 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4785 -0.9 -2.5 conserved exported protein of unknown function compare
PP_4320 -0.9 -3.4 cytochrome c-type biogenesis protein compare
PP_0593 -0.9 -1.3 putative ribosome-binding factor compare
PP_1733 -0.9 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_5445 -0.9 -2.3 conserved protein of unknown function compare
PP_1428 -0.9 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_4902 -0.9 -1.2 Oligoribonuclease compare
PP_0405 -0.8 -4.0 conserved protein of unknown function compare
PP_0719 -0.8 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -0.8 -1.0 queuine tRNA-ribosyltransferase compare
PP_4693 -0.8 -2.3 RNA polymerase-binding transcription factor DksA compare
PP_4004 -0.8 -3.1 DNA translocase FtsK compare
PP_2322 -0.8 -2.8 Major outer membrane lipoprotein compare
PP_4131 -0.8 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_4379 -0.8 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2153 -0.8 -3.1 conserved protein of unknown function compare
PP_4262 -0.8 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4066 -0.8 -2.5 methylglutaconyl-CoA hydratase compare
PP_3946 -0.8 -1.3 HTH-type transcriptional repressor NicR compare
PP_3999 -0.8 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4122 -0.8 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0653 -0.7 -1.5 conserved protein of unknown function compare
PP_3726 -0.7 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_4804 -0.7 -1.1 RlpA-like lipoprotein compare
PP_4355 -0.7 -1.8 flagellar export apparatus subunit compare
PP_1317 -0.7 -2.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1734 -0.7 -1.8 Probable septum site-determining protein MinC compare
PP_5706 -0.7 -1.5 Sec translocation complex - SecG subunit compare
PP_3020 -0.7 -2.3 putative Serine/threonine protein phosphatase compare
PP_5054 -0.7 -1.4 glutaredoxin 3 compare
PP_1664 -0.7 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_2330 -0.7 -2.0 conserved protein of unknown function compare
PP_0504 -0.7 -2.8 Outer membrane protein OprG compare
PP_4560 -0.7 -2.5 putative Ribonuclease BN compare
PP_2336 -0.7 -2.4 aconitate hydratase 1 compare
PP_3365 -0.7 -1.2 Acetolactate synthase compare
PP_5327 -0.7 -1.9 putative phosphate ABC transporter, permease subunit compare
PP_2331 -0.7 -3.1 conserved membrane protein of unknown function compare
PP_4917 -0.7 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0119 -0.7 -2.7 putative zinc uptake regulation protein ZUR compare
PP_1788 -0.7 -2.4 conserved protein of unknown function compare
PP_4937 -0.7 -3.7 toluene tolerance protein compare
PP_4058 -0.7 -4.2 1,4-alpha-glucan branching enzyme compare
PP_2044 -0.7 -1.8 conserved inner membrane protein of unknown function compare
PP_2414 -0.7 -1.9 conserved exported protein of unknown function compare
PP_0630 -0.7 -1.3 DNA gyrase inhibitor YacG compare
PP_0291 -0.7 -2.4 conserved protein of unknown function compare
PP_2433 -0.6 -1.8 conserved protein of unknown function compare
PP_3346 -0.6 -2.4 Nickel transporter ATP-binding protein compare
PP_4891 -0.6 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0685 -0.6 -1.6 conserved protein of unknown function compare
PP_3821 -0.6 -4.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1513 -0.6 -1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_5557 -0.6 -2.0 protein of unknown function compare
PP_4130 -0.6 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0063 -0.6 -1.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4517 -0.6 -1.4 conserved protein of unknown function compare
PP_2510 -0.6 -1.7 conserved protein of unknown function compare
PP_5717 -0.6 -1.6 conserved protein of unknown function compare
PP_0293 -0.6 -1.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1757 -0.6 -2.5 DNA-binding transcriptional dual regulator compare
PP_4362 -0.6 -2.2 conserved protein of unknown function compare
PP_0434 -0.6 -1.7 Anhydro-N-acetylmuramic acid kinase compare
PP_1410 -0.6 -1.2 conserved protein of unknown function compare
PP_3587 -0.6 -2.7 lipid hydroperoxide peroxidase compare
PP_4098 -0.6 -1.4 UvrABC system protein C compare
PP_1216 -0.6 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1381 -0.6 -1.0 4-carboxymuconolactone decarboxylase compare
PP_0691 -0.6 -0.9 Glutamate 5-kinase compare
PP_4471 -0.6 -1.7 Magnesium transporter compare
PP_0345 -0.5 -2.3 putative Heptose kinase WapP compare
PP_4837 -0.5 -1.7 conserved protein of unknown function compare
PP_0781 -0.5 -2.2 conserved protein of unknown function compare
PP_1629 -0.5 -3.0 Protein RecA compare
PP_4988 -0.5 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0872 -0.5 -3.1 Peptide chain release factor 3 compare
PP_0425 -0.5 -1.8 conserved protein of unknown function compare
PP_4253 -0.5 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_1099 -0.5 -1.0 Cold shock protein CapB compare
PP_5338 -0.5 -1.8 aspartate ammonia-lyase compare
PP_4879 -0.5 -1.8 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2214 -0.5 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4684 -0.5 -2.7 conserved protein of unknown function with kinase-like domain compare
PP_3238 -0.5 -2.6 putative Transcriptional regulator PyrR compare
PP_1224 -0.5 -2.6 periplasmic subunit of the TolQRA transport system compare
PP_0887 -0.5 -2.8 Sensor histidine kinase compare
PP_4696 -0.5 -2.3 Nitrogen regulation protein NR(I) compare
PP_5331 -0.5 -1.5 Long-chain acyl-CoA thioester hydrolase compare
PP_1979 -0.5 -1.8 putative Hydrolase compare
PP_4286 -0.5 -2.1 allantoinase compare
PP_1008 -0.5 -1.3 RNA polymerase subunit sigma-24 compare
PP_1493 -0.5 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3105 -0.5 -1.1 conserved membrane protein of unknown function compare
PP_3190 -0.5 -1.9 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4265 -0.5 -0.9 DNA-binding transcriptional dual regulator compare
PP_1752 -0.5 -2.7 conserved protein of unknown function compare
PP_4909 -0.5 -2.9 phosphoserine phosphatase compare
PP_0435 -0.5 -1.8 Peptidase, M23/M37 family compare
PP_1571 -0.5 -1.6 conserved protein of unknown function compare
PP_0919 -0.5 -1.7 conserved protein of unknown function compare
PP_2582 -0.5 -2.3 putative Heme oxygenase compare
PP_4875 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_5162 -0.5 -1.7 conserved exported protein of unknown function compare
PP_0209 -0.5 -2.1 ATP-binding taurine transporter subunit compare
PP_2773 -0.5 -1.0 conserved protein of unknown function compare
PP_4577 -0.5 -2.3 UPF0271 protein PP_4577 compare
PP_2025 -0.5 -1.8 Exonuclease SbcD compare
PP_5580 -0.5 -1.5 protein of unknown function compare
PP_4989 -0.5 -1.6 Protein PilJ compare
PP_5109 -0.5 -2.4 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_0062 -0.5 -2.1 3-methyl-adenine DNA glycosylase I compare
PP_4250 -0.5 -3.1 cytochrome c oxidase subunit I, cbb3-type compare
PP_0629 -0.5 -2.4 conserved membrane protein of unknown function compare
PP_4722 -0.5 -1.9 Transcription elongation factor GreA compare
PP_5492 -0.5 -2.5 conserved protein of unknown function compare
PP_4721 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_4546 -0.5 -1.7 ATP-dependent helicase HrpA compare
PP_3963 -0.5 -2.2 conserved protein of unknown function compare
PP_0401 -0.5 -1.2 Ribosomal RNA small subunit methyltransferase A compare
PP_1512 -0.5 -1.7 conserved protein of unknown function compare
PP_3028 -0.5 -2.6 conserved protein of unknown function compare
PP_3806 -0.5 -1.2 Hydrolase, isochorismatase family compare
PP_2302 -0.5 -2.3 DNA-binding, ATP-dependent protease compare
PP_2429 -0.5 -0.6 putative Membrane protein compare
PP_0258 -0.5 -1.3 regulator of murein cross-linking compare
PP_3627 -0.5 -1.9 conserved protein of unknown function compare
PP_4332 -0.5 -1.9 Chemotaxis protein CheW compare
PP_4943 -0.5 -0.9 putative Glycosyl transferase compare
PP_5648 -0.4 -2.0 conserved exported protein of unknown function compare
PP_4792 -0.4 -1.4 conserved exported protein of unknown function compare
PP_4236 -0.4 -1.7 putative Thiol:disulfide interchange protein dsbE compare
PP_2646 -0.4 -1.3 conserved protein of unknown function compare
PP_0126 -0.4 -1.3 Cytochrome c4 compare
PP_4475 -0.4 -2.3 succinylglutamate desuccinylase compare
PP_5294 -0.4 -2.3 Ribonuclease PH compare
PP_0886 -0.4 -1.8 conserved exported protein of unknown function compare
PP_5499 -0.4 -1.7 conserved protein of unknown function compare
PP_0507 -0.4 -2.4 putative ABC efflux transporter, ATP-binding protein compare
PP_0914 -0.4 -2.9 GGDEF domain protein compare
PP_1826 -0.4 -1.4 Hydrolase, isochorismatase family compare
PP_5SB -0.4 -1.5 5S ribosomal RNA compare
PP_0922 -0.4 -2.3 conserved protein of unknown function compare
PP_4287 -0.4 -2.4 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
PP_5429 -0.4 -2.1 protein of unknown function compare
PP_4184 -0.4 -3.1 branched chain amino acid transporter compare
PP_2474 -0.4 -1.7 Glutathione S-transferase family protein compare
PP_0703 -0.4 -1.7 putative Transmembrane sensor compare
PP_4581 -0.4 -1.5 putative amidotransferase compare
PP_0663 -0.4 -1.8 Transcriptional regulator, AsnC family compare
PP_5313 -0.4 -1.2 DNA-binding protein HU-alpha compare
PP_0082 -0.4 -2.0 tryptophan synthase alpha chain compare
PP_1867 -0.4 -2.5 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Sodium Chloride across organisms