| | gene | name | fitness | t score | description | |
|---|
| b1765 | ydjA | -3.7 | -1.3 | predicted oxidoreductase (NCBI) | compare |
| b4655 | ythA | -3.2 | -1.3 | expressed protein (RefSeq) | compare |
| b3839 | tatC | -2.7 | -10.1 | TatABCE protein translocation system subunit (NCBI) | compare |
| b4201 | priB | -2.6 | -3.7 | primosomal replication protein N (NCBI) | compare |
| b1573 | ydfC | -2.4 | -1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b0439 | lon | -2.4 | -7.2 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b2894 | xerD | -2.1 | -1.1 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0630 | lipB | -2.0 | -1.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b4520 | ymgF | -1.9 | -1.8 | hypothetical protein (NCBI) | compare |
| b0564 | appY | -1.9 | -1.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2897 | ygfY | -1.8 | -4.0 | hypothetical protein (NCBI) | compare |
| b1286 | rnb | -1.8 | -2.9 | exoribonuclease II (NCBI) | compare |
| b0721 | sdhC | -1.8 | -6.9 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b0726 | sucA | -1.6 | -4.0 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b3979 | thrT | -1.6 | -0.4 | tRNA-Thr (NCBI) | compare |
| b3169 | nusA | -1.6 | -1.8 | transcription elongation factor NusA (NCBI) | compare |
| b1291 | sapD | -1.6 | -1.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1860 | ruvB | -1.6 | -0.8 | Holliday junction DNA helicase B (NCBI) | compare |
| b0990 | cspG | -1.6 | -0.8 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4685 | yrbN | -1.5 | -2.8 | expressed protein (RefSeq) | compare |
| b0728 | sucC | -1.5 | -6.7 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b2287 | nuoB | -1.5 | -6.2 | NADH dehydrogenase subunit B (NCBI) | compare |
| b2288 | nuoA | -1.5 | -2.5 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0739 | tolA | -1.4 | -2.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0200 | gmhB | -1.4 | -1.6 | hypothetical protein (NCBI) | compare |
| b2285 | nuoE | -1.4 | -2.5 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1575 | dicB | -1.4 | -0.9 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b3229 | sspA | -1.4 | -2.9 | stringent starvation protein A (NCBI) | compare |
| b2286 | nuoC | -1.4 | -4.9 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3621 | rfaC | -1.4 | -5.5 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3863 | polA | -1.4 | -0.8 | DNA polymerase I (NCBI) | compare |
| b2330 | yfcB | -1.4 | -1.1 | putative adenine-specific methylase (VIMSS) | compare |
| b2276 | nuoN | -1.4 | -4.8 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2279 | nuoK | -1.4 | -2.1 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2567 | rnc | -1.3 | -0.7 | ribonuclease III (NCBI) | compare |
| b0890 | ftsK | -1.3 | -3.7 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b4139 | aspA | -1.3 | -8.5 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b2281 | nuoI | -1.3 | -2.5 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0723 | sdhA | -1.3 | -8.5 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b2168 | fruK | -1.3 | -1.9 | 1-phosphofructokinase (NCBI) | compare |
| b1936 | intG | -1.3 | -0.8 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3613 | yibP | -1.3 | -1.8 | putative membrane protein (VIMSS) | compare |
| b1062 | pyrC | -1.3 | -7.3 | dihydroorotase (NCBI) | compare |
| b2282 | nuoH | -1.3 | -3.3 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3545 | proK | -1.3 | -1.9 | tRNA-Pro (NCBI) | compare |
| b3636 | rpmG | -1.3 | -1.9 | 50S ribosomal protein L33 (NCBI) | compare |
| b1161 | ycgX | -1.3 | -0.5 | hypothetical protein (NCBI) | compare |
| b2283 | nuoG | -1.3 | -7.4 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b3778 | rep | -1.3 | -5.7 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4171 | miaA | -1.3 | -1.2 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4006 | purH | -1.2 | -7.7 | bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) | compare |
| b0724 | sdhB | -1.2 | -7.4 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b3236 | mdh | -1.2 | -6.6 | malate dehydrogenase (NCBI) | compare |
| b0738 | tolR | -1.2 | -2.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0049 | apaH | -1.2 | -2.9 | diadenosinetetraphosphatase (NCBI) | compare |
| b2278 | nuoL | -1.2 | -7.9 | NADH dehydrogenase subunit L (NCBI) | compare |
| b0722 | sdhD | -1.2 | -3.1 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b0145 | dksA | -1.2 | -2.7 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1160 | elbA | -1.2 | -0.9 | hypothetical protein (NCBI) | compare |
| b1612 | fumA | -1.2 | -3.7 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b0737 | tolQ | -1.2 | -1.9 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3341 | rpsG | -1.1 | -1.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b2280 | nuoJ | -1.1 | -3.8 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3652 | recG | -1.1 | -5.9 | ATP-dependent DNA helicase (NCBI) | compare |
| b1882 | cheY | -1.1 | -0.2 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4603 | rseX | -1.1 | -0.7 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2424 | cysU | -1.1 | -3.0 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b3870 | glnA | -1.1 | -2.5 | glutamine synthetase (NCBI) | compare |
| b3609 | secB | -1.1 | -2.4 | export protein SecB (NCBI) | compare |
| b2284 | nuoF | -1.1 | -4.1 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1874 | cutC | -1.1 | -2.6 | copper homeostasis protein (NCBI) | compare |
| b2277 | nuoM | -1.1 | -5.6 | NADH dehydrogenase subunit M (NCBI) | compare |
| b3390 | aroK | -1.1 | -1.0 | shikimate kinase I (NCBI) | compare |
| b1129 | phoQ | -1.1 | -2.7 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b4232 | fbp | -1.1 | -7.4 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b0053 | surA | -1.1 | -2.3 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1025 | ycdT | -1.1 | -0.7 | predicted diguanylate cyclase (NCBI) | compare |
| b3792 | wzxE | -1.1 | -4.2 | O-antigen translocase (NCBI) | compare |
| b2576 | srmB | -1.1 | -2.1 | ATP-dependent RNA helicase (NCBI) | compare |
| b0720 | gltA | -1.1 | -5.1 | citrate synthase (NCBI) | compare |
| b1192 | ldcA | -1.0 | -3.7 | L,D-carboxypeptidase A (NCBI) | compare |
| b0522 | purK | -1.0 | -5.7 | phosphoribosylaminoimidazole carboxylase (NCBI) | compare |
| b1693 | aroD | -1.0 | -3.6 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b1176 | minC | -1.0 | -2.1 | septum formation inhibitor (NCBI) | compare |
| b2935 | tktA | -1.0 | -1.1 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1418 | cybB | -1.0 | -3.0 | cytochrome b(561) (VIMSS) | compare |
| b4458 | oxyS | -1.0 | -1.0 | global regulatory RNA (NCBI) | compare |
| b2951 | yggS | -1.0 | -2.8 | predicted enzyme (NCBI) | compare |
| b0471 | ybaB | -1.0 | -1.8 | hypothetical protein (NCBI) | compare |
| b1804 | rnd | -1.0 | -3.4 | ribonuclease D (NCBI) | compare |
| b0928 | aspC | -1.0 | -4.3 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b3620 | rfaF | -0.9 | -3.7 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1679 | sufE | -0.9 | -3.3 | cysteine desufuration protein SufE (NCBI) | compare |
| b0945 | pyrD | -0.9 | -5.4 | dihydroorotate dehydrogenase (NCBI) | compare |
| b1762 | b1762 | -0.9 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2414 | cysK | -0.9 | -7.2 | cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) | compare |
| b3811 | xerC | -0.9 | -0.9 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1524 | yneH | -0.9 | -0.6 | predicted glutaminase (NCBI) | compare |
| b4503 | yafF | -0.9 | -0.3 | no description | compare |
| b2912 | ygfA | -0.9 | -2.2 | putative ligase (VIMSS) | compare |
| b4179 | vacB | -0.9 | -3.7 | putative enzyme (VIMSS) | compare |
| b3290 | trkA | -0.9 | -1.7 | potassium transporter peripheral membrane component (NCBI) | compare |
| b3026 | qseC | -0.9 | -2.8 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1744 | astE | -0.9 | -3.7 | succinylglutamate desuccinylase (NCBI) | compare |
| b1628 | rsxB | -0.9 | -1.2 | electron transport complex protein RnfB (NCBI) | compare |
| b3052 | rfaE | -0.9 | -3.1 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0920 | ycbC | -0.9 | -3.7 | conserved inner membrane protein (NCBI) | compare |
| b1333 | uspE | -0.9 | -3.3 | stress-induced protein (NCBI) | compare |
| b3414 | gntY | -0.8 | -3.6 | predicted gluconate transport associated protein (NCBI) | compare |
| b2565 | recO | -0.8 | -4.3 | DNA repair protein RecO (NCBI) | compare |
| b1983 | yeeN | -0.8 | -3.6 | hypothetical protein (NCBI) | compare |
| b0080 | fruR | -0.8 | -4.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2136 | yohD | -0.8 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3838 | tatB | -0.8 | -3.6 | sec-independent translocase (NCBI) | compare |
| b2498 | upp | -0.8 | -1.8 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2114 | metG | -0.8 | -1.4 | methionyl-tRNA synthetase (NCBI) | compare |
| b3199 | yrbK | -0.8 | -2.8 | hypothetical protein (NCBI) | compare |
| b0729 | sucD | -0.8 | -2.5 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b1344 | ydaO | -0.8 | -1.6 | predicted C32 tRNA thiolase (NCBI) | compare |
| b1583 | ynfB | -0.8 | -1.9 | hypothetical protein (NCBI) | compare |
| b1563 | relE | -0.8 | -1.9 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1279 | yciS | -0.8 | -0.8 | conserved inner membrane protein (NCBI) | compare |
| b3617 | kbl | -0.8 | -4.5 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b1235 | rssB | -0.8 | -4.1 | response regulator of RpoS (NCBI) | compare |
| b4481 | rffT | -0.8 | -2.5 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2762 | cysH | -0.8 | -4.8 | phosphoadenosine phosphosulfate reductase (NCBI) | compare |
| b1968 | yedV | -0.8 | -1.9 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b3791 | rffA | -0.8 | -2.5 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0589 | fepG | -0.7 | -2.7 | iron-enterobactin transporter subunit (NCBI) | compare |
| b2501 | ppk | -0.7 | -3.8 | polyphosphate kinase (NCBI) | compare |
| b1281 | pyrF | -0.7 | -1.5 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b3642 | pyrE | -0.7 | -3.3 | orotate phosphoribosyltransferase (NCBI) | compare |
| b0429 | cyoD | -0.7 | -2.5 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b4436 | ryeC | -0.7 | -1.0 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2859 | ygeO | -0.7 | -1.4 | hypothetical protein (RefSeq) | compare |
| b2301 | yfcF | -0.7 | -2.8 | predicted enzyme (NCBI) | compare |
| b1219 | ychN | -0.7 | -1.8 | hypothetical protein (NCBI) | compare |
| b1730 | ydjO | -0.7 | -0.3 | predicted protein (RefSeq) | compare |
| b1175 | minD | -0.7 | -2.0 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b2499 | purM | -0.7 | -3.5 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2343 | b2343 | -0.7 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2966 | yqgA | -0.7 | -2.9 | predicted inner membrane protein (NCBI) | compare |
| b1182 | hlyE | -0.7 | -0.4 | hemolysin E (VIMSS) | compare |
| b0142 | folK | -0.7 | -0.1 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4640 | yoeG | -0.7 | -0.8 | no description | compare |
| b1811 | yoaH | -0.7 | -1.3 | hypothetical protein (NCBI) | compare |
| b2564 | pdxJ | -0.7 | -1.9 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b4041 | plsB | -0.7 | -1.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1292 | sapC | -0.7 | -1.0 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0740 | tolB | -0.7 | -1.7 | translocation protein TolB precursor (NCBI) | compare |
| b0585 | fes | -0.7 | -2.4 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b4048 | yjbM | -0.7 | -0.5 | hypothetical protein (NCBI) | compare |
| b1252 | tonB | -0.7 | -1.7 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1084 | rne | -0.7 | -2.9 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b4239 | treC | -0.7 | -0.8 | trehalose-6-P hydrolase (NCBI) | compare |
| b3405 | ompR | -0.7 | -2.2 | osmolarity response regulator (NCBI) | compare |
| b3706 | trmE | -0.7 | -1.9 | tRNA modification GTPase (NCBI) | compare |
| b3933 | ftsN | -0.7 | -3.6 | essential cell division protein (NCBI) | compare |
| b1125 | potB | -0.7 | -1.8 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b2189 | proL | -0.7 | -0.7 | tRNA-Pro (NCBI) | compare |
| b3198 | kdsC | -0.7 | -1.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3649 | rpoZ | -0.7 | -1.3 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b2188 | yejM | -0.7 | -3.9 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0889 | lrp | -0.6 | -1.6 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b4538 | yoeF | -0.6 | -0.9 | hypothetical protein (RefSeq) | compare |
| b1690 | ydiM | -0.6 | -0.6 | predicted transporter (NCBI) | compare |
| b2808 | gcvA | -0.6 | -2.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0432 | cyoA | -0.6 | -4.2 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b1171 | b1171 | -0.6 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1324 | tpx | -0.6 | -2.5 | thiol peroxidase (NCBI) | compare |
| b3816 | corA | -0.6 | -3.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1760 | ynjH | -0.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b4214 | cysQ | -0.6 | -4.2 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b3582 | sgbU | -0.6 | -2.7 | probable 3-hexulose-6-phosphate isomerase (VIMSS) | compare |
| b1390 | paaC | -0.6 | -1.2 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b0957 | ompA | -0.6 | -1.4 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b1607 | ydgC | -0.6 | -1.0 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3844 | fre | -0.6 | -2.2 | NAD(P)H-flavin reductase (NCBI) | compare |
| b4203 | rplI | -0.6 | -2.5 | 50S ribosomal protein L9 (NCBI) | compare |
| b1409 | ynbB | -0.6 | -0.3 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b0683 | fur | -0.6 | -0.6 | ferric uptake regulator (NCBI) | compare |
| b3098 | yqjD | -0.6 | -2.1 | hypothetical protein (NCBI) | compare |
| b0746 | valZ | -0.6 | -1.4 | tRNA-Val (NCBI) | compare |
| b0685 | ybfE | -0.6 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1363 | trkG | -0.6 | -0.3 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b3790 | rffC | -0.6 | -1.3 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0605 | ahpC | -0.6 | -2.4 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3389 | aroB | -0.6 | -4.1 | 3-dehydroquinate synthase (NCBI) | compare |
| b0751 | pnuC | -0.6 | -2.2 | predicted nicotinamide mononucleotide transporter (NCBI) | compare |
| b3630 | rfaP | -0.6 | -4.1 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1497 | b1497 | -0.6 | -0.3 | putative enzyme (VIMSS) | compare |
| b1499 | ydeO | -0.6 | -0.3 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1248 | b1248 | -0.6 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1545 | pinQ | -0.6 | -0.1 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b3129 | sohA | -0.6 | -1.4 | predicted regulator (NCBI) | compare |
| b3281 | aroE | -0.6 | -4.3 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b1989 | asnV | -0.6 | -1.4 | tRNA-Asn (NCBI) | compare |
| b1551 | b1551 | -0.6 | -0.2 | orf, hypothetical protein (VIMSS) | compare |
| b2903 | gcvP | -0.6 | -4.5 | glycine dehydrogenase (NCBI) | compare |
| b3082 | ygjM | -0.6 | -1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |