| | gene | name | fitness | t score | description | |
|---|
| b1185 | dsbB | +2.7 | 12.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3860 | dsbA | +2.0 | 18.7 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1361 | ydaW | +1.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2156 | lysP | +1.3 | 11.4 | lysine transporter (NCBI) | compare |
| b1831 | proQ | +1.1 | 4.1 | putative solute/DNA competence effector (NCBI) | compare |
| b4704 | arrS | +1.0 | 0.5 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b0730 | mngR | +0.9 | 2.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4676 | yoaK | +0.9 | 0.7 | expressed protein (RefSeq) | compare |
| b4642 | yoeD | +0.9 | 1.8 | no description | compare |
| b1195 | ymgE | +0.9 | 3.3 | predicted inner membrane protein (NCBI) | compare |
| b1238 | tdk | +0.8 | 5.6 | thymidine kinase (NCBI) | compare |
| b3009 | yghB | +0.8 | 5.7 | conserved inner membrane protein (NCBI) | compare |
| b0464 | acrR | +0.8 | 6.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0630 | lipB | +0.8 | 1.4 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3181 | greA | +0.7 | 4.9 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1530 | marR | +0.7 | 2.6 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b0929 | ompF | +0.7 | 4.2 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b4596 | yciZ | +0.7 | 1.4 | hypothetical protein (RefSeq) | compare |
| b0542 | renD | +0.7 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1476 | fdnI | +0.6 | 1.1 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1936 | intG | +0.6 | 0.9 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1954 | dsrA | +0.6 | 2.7 | regulatory antisense RNA (NCBI) | compare |
| b4699 | fnrS | +0.5 | 0.9 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3961 | oxyR | +0.5 | 4.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3889 | yiiE | +0.5 | 2.2 | predicted transcriptional regulator (RefSeq) | compare |
| b1506 | yneL | +0.5 | 0.9 | predicted transcriptional regulator (NCBI) | compare |
| b1566 | flxA | +0.5 | 2.6 | Qin prophage; predicted protein (NCBI) | compare |
| b2209 | eco | +0.5 | 1.4 | ecotin precursor (NCBI) | compare |
| b2916 | argP | +0.5 | 3.6 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b1739 | osmE | +0.5 | 2.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b0564 | appY | +0.5 | 1.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b0191 | yaeJ | +0.5 | 3.6 | hypothetical protein (NCBI) | compare |
| b4538 | yoeF | +0.5 | 1.4 | hypothetical protein (RefSeq) | compare |
| b1919 | yedO | +0.5 | 1.9 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1841 | yobA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1179 | ycgL | +0.4 | 2.3 | conserved protein (NCBI) | compare |
| b4157 | yjeN | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b4241 | treR | +0.4 | 4.0 | trehalose repressor (NCBI) | compare |
| b2934 | cmtB | +0.4 | 0.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b4387 | ytjB | +0.4 | 3.0 | hypothetical protein (NCBI) | compare |
| b1753 | ynjA | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b0613 | citG | +0.4 | 2.1 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b1600 | mdtJ | +0.4 | 1.3 | multidrug efflux system transporter (NCBI) | compare |
| b4520 | ymgF | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b1305 | pspB | +0.4 | 1.5 | phage shock protein B (NCBI) | compare |
| b4573 | insZ | +0.4 | 2.1 | no description | compare |
| b1524 | yneH | +0.4 | 0.8 | predicted glutaminase (NCBI) | compare |
| b4042 | dgkA | +0.4 | 0.3 | diacylglycerol kinase (NCBI) | compare |
| b0848 | ybjM | +0.4 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b4603 | rseX | +0.4 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2096 | gatY | +0.4 | 2.7 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b3396 | mrcA | +0.4 | 3.7 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b1038 | csgF | +0.4 | 2.0 | predicted transport protein (NCBI) | compare |
| b4089 | rpiR | +0.4 | 3.5 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b1590 | ynfH | +0.4 | 1.8 | oxidoreductase, membrane subunit (NCBI) | compare |
| b1233 | ychJ | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b0843 | ybjH | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1205 | ychH | +0.4 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b1930 | yedF | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b2193 | narP | +0.4 | 2.3 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b2409 | yfeR | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4063 | soxR | +0.3 | 1.9 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b1977 | asnT | +0.3 | 1.3 | tRNA-Asn (NCBI) | compare |
| b4471 | tdcG | +0.3 | 3.2 | L-serine dehydratase 3 (NCBI) | compare |
| b4558 | yifL | +0.3 | 2.1 | predicted lipoprotein (NCBI) | compare |
| b1618 | uidR | +0.3 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1044 | ymdA | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b3147 | yraM | +0.3 | 3.0 | hypothetical protein (NCBI) | compare |
| b2264 | menD | +0.3 | 2.9 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b2996 | hybA | +0.3 | 2.8 | hydrogenase 2 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b1742 | b1742 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2899 | yqfA | +0.3 | 2.2 | predicted oxidoreductase, inner membrane subunit (NCBI) | compare |
| b0798 | ybiA | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.2 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b0933 | ssuB | +0.3 | 1.7 | alkanesulfonate transporter subunit (NCBI) | compare |
| b2014 | yeeF | +0.3 | 2.3 | putative amino acid/amine transport protein (VIMSS) | compare |
| b0853 | ybjN | +0.3 | 1.8 | predicted oxidoreductase (NCBI) | compare |
| b1823 | cspC | +0.3 | 1.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b3844 | fre | +0.3 | 1.9 | NAD(P)H-flavin reductase (NCBI) | compare |
| b0521 | ybcF | +0.3 | 2.0 | predicted carbamate kinase (NCBI) | compare |
| b2445 | yffN | +0.3 | 1.0 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2263 | yfbB | +0.3 | 1.3 | predicted peptidase (NCBI) | compare |
| b1144 | ymfJ | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1287 | yciW | +0.3 | 1.4 | putative oxidoreductase (VIMSS) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b2792 | yqcC | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b2998 | yghW | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3068 | ygjF | +0.3 | 1.9 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b2853 | ygeI | +0.3 | 0.2 | hypothetical protein (NCBI) | compare |
| b0456 | ybaA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b1070 | flgN | +0.3 | 0.8 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4444 | rygA | +0.3 | 1.3 | unknown RNA (NCBI) | compare |
| b4215 | ytfI | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b1438 | ydcQ | +0.3 | 1.9 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0418 | pgpA | +0.3 | 1.8 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b4505 | insX | +0.3 | 0.9 | predicted IS protein (RefSeq) | compare |
| b2859 | ygeO | +0.3 | 0.8 | hypothetical protein (RefSeq) | compare |
| b2155 | cirA | +0.3 | 2.1 | ferric iron-catecholate outer membrane transporter (NCBI) | compare |
| b4104 | phnE | +0.3 | 1.4 | phosphonate/organophosphate ester transporter subunit (NCBI) | compare |
| b1419 | ydcA | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4313 | fimE | +0.3 | 2.3 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b2749 | ygbE | +0.3 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b2260 | menE | +0.3 | 2.4 | O-succinylbenzoic acid--CoA ligase (NCBI) | compare |
| b3623 | rfaK | +0.3 | 1.0 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b0802 | ybiJ | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b0713 | ybgL | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4367 | fhuF | +0.3 | 2.3 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b3043 | ygiL | +0.3 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2261 | menC | +0.3 | 1.7 | O-succinylbenzoate synthase (NCBI) | compare |
| b1902 | yecI | +0.3 | 1.7 | predicted ferritin-like protein (NCBI) | compare |
| b1686 | ydiI | +0.3 | 0.5 | hypothetical protein (NCBI) | compare |
| b1892 | flhD | +0.3 | 1.8 | DNA-binding transcriptional dual regulator with FlhC (RefSeq) | compare |
| b2684 | mprA | +0.3 | 1.6 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1081 | flgJ | +0.3 | 2.0 | flagellar biosynthesis protein FlgJ (NCBI) | compare |
| b4640 | yoeG | +0.3 | 1.0 | no description | compare |
| b1756 | ynjD | +0.3 | 1.8 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2208 | napF | +0.3 | 1.6 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b4443 | gcvB | +0.3 | 0.2 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4481 | rffT | +0.3 | 1.7 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3627 | rfaI | +0.3 | 2.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1678 | ynhG | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4646 | yrdE | +0.3 | 1.0 | no description | compare |
| b2741 | rpoS | +0.3 | 1.8 | RNA polymerase sigma factor (NCBI) | compare |
| b1838 | pphA | +0.3 | 1.9 | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (VIMSS) | compare |
| b1875 | yecM | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0296 | ykgM | +0.3 | 1.2 | 50S ribosomal protein L31 (NCBI) | compare |
| b4125 | dcuS | +0.3 | 2.3 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | compare |
| b2809 | b2809 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1661 | cfa | +0.3 | 1.9 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1478 | adhP | +0.3 | 1.4 | alcohol dehydrogenase (VIMSS) | compare |
| b1805 | fadD | +0.3 | 2.1 | acyl-CoA synthase (NCBI) | compare |
| b3790 | rffC | +0.3 | 1.5 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3861 | yihF | +0.3 | 2.1 | putative GTP-binding protein (VIMSS) | compare |
| b2587 | kgtP | +0.3 | 1.5 | alpha-ketoglutarate transporter (NCBI) | compare |
| b2997 | hybO | +0.3 | 2.0 | hydrogenase 2, small subunit (NCBI) | compare |
| b3646 | yicG | +0.3 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0209 | yafD | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3628 | rfaB | +0.2 | 2.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2765 | ygcM | +0.2 | 1.2 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b2187 | yejL | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b2180 | yejF | +0.2 | 2.0 | fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components (NCBI) | compare |
| b1357 | ydaS | +0.2 | 0.8 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1348 | lar | +0.2 | 0.6 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b3516 | gadX | +0.2 | 2.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0192 | nlpE | +0.2 | 1.6 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b3875 | ompL | +0.2 | 1.1 | predicted outer membrane porin L (NCBI) | compare |
| b4376 | osmY | +0.2 | 1.4 | periplasmic protein (NCBI) | compare |
| b0447 | ybaO | +0.2 | 1.9 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b1387 | maoC | +0.2 | 1.4 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1462 | b1462 | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3725 | pstB | +0.2 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b3512 | GadE | +0.2 | 1.5 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2535 | csiE | +0.2 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0611 | rna | +0.2 | 1.4 | ribonuclease I (NCBI) | compare |
| b0393 | rdgC | +0.2 | 2.0 | recombination associated protein (NCBI) | compare |
| b1227 | narI | +0.2 | 1.2 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b2993 | hybD | +0.2 | 1.4 | predicted maturation element for hydrogenase 2 (NCBI) | compare |
| b0193 | yaeF | +0.2 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3191 | yrbB | +0.2 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0998 | torD | +0.2 | 0.5 | chaperone protein TorD (NCBI) | compare |
| b3794 | rffM | +0.2 | 1.8 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2177 | yejA | +0.2 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4277 | yjgZ | +0.2 | 1.6 | KpLE2 phage-like element; predicted protein (NCBI) | compare |
| b1730 | ydjO | +0.2 | 0.5 | predicted protein (RefSeq) | compare |
| b1811 | yoaH | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b2252 | ais | +0.2 | 1.4 | hypothetical protein (NCBI) | compare |
| b1000 | cbpA | +0.2 | 1.4 | curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK (NCBI) | compare |
| b1152 | ymfP | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2182 | bcr | +0.2 | 1.4 | bicyclomycin/multidrug efflux system (NCBI) | compare |
| b1822 | rrmA | +0.2 | 0.7 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b0804 | ybiX | +0.2 | 1.4 | putative enzyme (VIMSS) | compare |
| b2832 | ygdQ | +0.2 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b0678 | nagB | +0.2 | 1.2 | glucosamine-6-phosphate deaminase (NCBI) | compare |
| b2214 | yojL | +0.2 | 1.8 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b0122 | yacC | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2051 | wcaH | +0.2 | 0.8 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b0015 | dnaJ | +0.2 | 1.7 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1408 | b1408 | +0.2 | 1.4 | probable enzyme (VIMSS) | compare |
| b2783 | chpR | +0.2 | 0.6 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b2481 | hyfA | +0.2 | 0.9 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b1251 | yciI | +0.2 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2685 | emrA | +0.2 | 1.7 | multidrug efflux system (NCBI) | compare |
| b4613 | dinQ | +0.2 | 0.9 | Damage inducible, function unknown (RefSeq) | compare |
| b2010 | dacD | +0.2 | 1.4 | penicillin binding protein 6b (VIMSS) | compare |
| b0696 | kdpC | +0.2 | 0.8 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b2518 | ndk | +0.2 | 0.6 | nucleoside diphosphate kinase (NCBI) | compare |
| b2618 | b2618 | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2500 | purN | +0.2 | 1.4 | phosphoribosylglycinamide formyltransferase (NCBI) | compare |
| b2804 | fucU | +0.2 | 1.2 | L-fucose mutarotase (NCBI) | compare |
| b1948 | fliP | +0.2 | 1.5 | flagellar biosynthesis protein P (NCBI) | compare |
| b2444 | yffM | +0.2 | 0.8 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b3723 | bglG | +0.2 | 1.4 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b2217 | rcsB | +0.2 | 1.5 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1733 | chbG | +0.2 | 1.2 | hypothetical protein (NCBI) | compare |
| b3234 | degQ | +0.2 | 1.8 | serine endoprotease, periplasmic (NCBI) | compare |
| b3037 | ygiB | +0.2 | 1.3 | conserved outer membrane protein (RefSeq) | compare |
| b3476 | nikA | +0.2 | 1.8 | nickel transporter subunit (NCBI) | compare |
| b1625 | ydgT | +0.2 | 1.4 | predicted regulator (NCBI) | compare |