| | gene | name | fitness | t score | description | |
|---|
| b2934 | cmtB | +1.3 | 1.1 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3860 | dsbA | +1.2 | 10.3 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2699 | recA | +1.1 | 1.8 | recombinase A (NCBI) | compare |
| b1185 | dsbB | +1.1 | 8.3 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1130 | phoP | +0.8 | 1.8 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b0798 | ybiA | +0.7 | 2.6 | hypothetical protein (NCBI) | compare |
| b2156 | lysP | +0.7 | 6.3 | lysine transporter (NCBI) | compare |
| b2071 | yegJ | +0.7 | 2.6 | hypothetical protein (NCBI) | compare |
| b1476 | fdnI | +0.7 | 1.2 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1831 | proQ | +0.6 | 2.6 | putative solute/DNA competence effector (NCBI) | compare |
| b3790 | rffC | +0.6 | 3.9 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4481 | rffT | +0.6 | 4.2 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0730 | mngR | +0.6 | 1.3 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3794 | rffM | +0.6 | 4.1 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b0802 | ybiJ | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b3786 | rffE | +0.6 | 5.0 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3787 | rffD | +0.6 | 4.8 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b2209 | eco | +0.6 | 1.4 | ecotin precursor (NCBI) | compare |
| b4642 | yoeD | +0.5 | 1.6 | no description | compare |
| b2859 | ygeO | +0.5 | 1.9 | hypothetical protein (RefSeq) | compare |
| b1195 | ymgE | +0.5 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b4596 | yciZ | +0.5 | 1.1 | hypothetical protein (RefSeq) | compare |
| b3021 | ygiT | +0.5 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3784 | rfe | +0.5 | 4.5 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1830 | prc | +0.5 | 3.5 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3396 | mrcA | +0.5 | 4.4 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b1954 | dsrA | +0.5 | 2.1 | regulatory antisense RNA (NCBI) | compare |
| b1753 | ynjA | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b0933 | ssuB | +0.4 | 2.4 | alkanesulfonate transporter subunit (NCBI) | compare |
| b1882 | cheY | +0.4 | 0.5 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4157 | yjeN | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3791 | rffA | +0.4 | 3.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4480 | hdfR | +0.4 | 2.9 | transcriptional regulator HdfR (NCBI) | compare |
| b1765 | ydjA | +0.4 | 0.7 | predicted oxidoreductase (NCBI) | compare |
| b2510 | b2510 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0183 | rnhB | +0.4 | 2.5 | ribonuclease HII (NCBI) | compare |
| b0218 | yafU | +0.4 | 1.5 | predicted inner membrane protein (RefSeq) | compare |
| b4546 | ypeB | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b2187 | yejL | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b2051 | wcaH | +0.4 | 1.1 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b1418 | cybB | +0.4 | 1.5 | cytochrome b(561) (VIMSS) | compare |
| b1348 | lar | +0.4 | 1.2 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1357 | ydaS | +0.4 | 1.2 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1332 | ynaJ | +0.4 | 0.2 | predicted inner membrane protein (NCBI) | compare |
| b1085 | b1085 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1742 | b1742 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1160 | elbA | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b3512 | GadE | +0.4 | 2.2 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4376 | osmY | +0.4 | 2.4 | periplasmic protein (NCBI) | compare |
| b1233 | ychJ | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b0114 | aceE | +0.4 | 0.9 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b1919 | yedO | +0.4 | 1.5 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b4505 | insX | +0.4 | 1.1 | predicted IS protein (RefSeq) | compare |
| b4538 | yoeF | +0.4 | 1.1 | hypothetical protein (RefSeq) | compare |
| b4699 | fnrS | +0.4 | 0.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4704 | arrS | +0.4 | 0.2 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b4603 | rseX | +0.4 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1299 | puuR | +0.4 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4573 | insZ | +0.4 | 1.7 | no description | compare |
| b1686 | ydiI | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b4698 | mgrR | +0.4 | 2.1 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b1709 | btuD | +0.3 | 0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2741 | rpoS | +0.3 | 2.8 | RNA polymerase sigma factor (NCBI) | compare |
| b3147 | yraM | +0.3 | 3.0 | hypothetical protein (NCBI) | compare |
| b2261 | menC | +0.3 | 2.3 | O-succinylbenzoate synthase (NCBI) | compare |
| b3250 | mreC | +0.3 | 1.2 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b3622 | rfaL | +0.3 | 1.9 | O-antigen ligase (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b1625 | ydgT | +0.3 | 2.2 | predicted regulator (NCBI) | compare |
| b4000 | hupA | +0.3 | 2.4 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0521 | ybcF | +0.3 | 2.0 | predicted carbamate kinase (NCBI) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b1724 | ydiZ | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2014 | yeeF | +0.3 | 2.3 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1977 | asnT | +0.3 | 1.6 | tRNA-Asn (NCBI) | compare |
| b4609 | ryfD | +0.3 | 1.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b4570 | lomR | +0.3 | 1.4 | no description | compare |
| b4660 | yhiL | +0.3 | 0.2 | no description | compare |
| b4369 | leuP | +0.3 | 1.7 | tRNA-Leu (NCBI) | compare |
| b1733 | chbG | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b1591 | b1591 | +0.3 | 0.9 | putative oxidoreductase component (VIMSS) | compare |
| b2476 | purC | +0.3 | 0.9 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b1557 | cspB | +0.3 | 0.9 | Qin prophage; cold shock protein (NCBI) | compare |
| b1138 | ymfE | +0.3 | 0.9 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1789 | yeaL | +0.3 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b2481 | hyfA | +0.3 | 2.0 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b4381 | deoC | +0.3 | 1.9 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b3844 | fre | +0.3 | 1.9 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1930 | yedF | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b2208 | napF | +0.3 | 1.7 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b2792 | yqcC | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b2250 | b2250 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1515 | lsrD | +0.3 | 1.5 | AI2 transporter (NCBI) | compare |
| b0641 | rlpB | +0.3 | 1.3 | minor lipoprotein (NCBI) | compare |
| b1129 | phoQ | +0.3 | 0.8 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b4441 | glmY | +0.3 | 1.0 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b1287 | yciW | +0.3 | 1.5 | putative oxidoreductase (VIMSS) | compare |
| b1305 | pspB | +0.3 | 1.0 | phage shock protein B (NCBI) | compare |
| b4558 | yifL | +0.3 | 2.3 | predicted lipoprotein (NCBI) | compare |
| b4431 | rprA | +0.3 | 1.1 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b0393 | rdgC | +0.3 | 2.2 | recombination associated protein (NCBI) | compare |
| b2532 | yfhQ | +0.3 | 1.9 | predicted methyltransferase (NCBI) | compare |
| b3623 | rfaK | +0.3 | 1.0 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b1276 | acnA | +0.3 | 1.7 | aconitate hydratase (NCBI) | compare |
| b2202 | napC | +0.3 | 1.3 | nitrate reductase, cytochrome c-type, periplasmic (NCBI) | compare |
| b0191 | yaeJ | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b4640 | yoeG | +0.3 | 1.0 | no description | compare |
| b4045 | yjbJ | +0.3 | 1.3 | predicted stress response protein (NCBI) | compare |
| b1485 | ddpC | +0.3 | 1.5 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1961 | dcm | +0.3 | 0.7 | DNA cytosine methylase (NCBI) | compare |
| b1238 | tdk | +0.3 | 1.6 | thymidine kinase (NCBI) | compare |
| b2916 | argP | +0.3 | 1.7 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b0212 | gloB | +0.3 | 1.5 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b1792 | yeaO | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1344 | ydaO | +0.3 | 1.1 | predicted C32 tRNA thiolase (NCBI) | compare |
| b4360 | yjjA | +0.3 | 1.4 | putative glycoprotein/receptor (VIMSS) | compare |
| b0713 | ybgL | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b2263 | yfbB | +0.3 | 0.9 | predicted peptidase (NCBI) | compare |
| b1179 | ycgL | +0.3 | 1.1 | conserved protein (NCBI) | compare |
| b1143 | ymfI | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1035 | ycdY | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b4513 | kdpF | +0.3 | 0.8 | potassium ion accessory transporter subunit (NCBI) | compare |
| b2782 | chpA | +0.3 | 1.8 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4687 | shoB | +0.3 | 1.6 | toxic membrane protein (RefSeq) | compare |
| b0101 | yacG | +0.3 | 1.3 | zinc-binding protein (NCBI) | compare |
| b4367 | fhuF | +0.3 | 2.1 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b3024 | ygiW | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4184 | yjfL | +0.3 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b1252 | tonB | +0.3 | 1.2 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1950 | fliR | +0.3 | 1.2 | flagellar biosynthesis protein R (NCBI) | compare |
| b1800 | yeaU | +0.3 | 2.0 | predicted dehydrogenase (NCBI) | compare |
| b2486 | hyfF | +0.3 | 2.1 | NADH dehydrogenase subunit N (NCBI) | compare |
| b4410 | ecnA | +0.3 | 0.7 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b4692 | oweE | +0.3 | 0.8 | no description | compare |
| b2010 | dacD | +0.2 | 1.9 | penicillin binding protein 6b (VIMSS) | compare |
| b2897 | ygfY | +0.2 | 1.2 | hypothetical protein (NCBI) | compare |
| b3391 | hofQ | +0.2 | 2.3 | predicted fimbrial transporter (NCBI) | compare |
| b3074 | ygjH | +0.2 | 1.8 | hypothetical protein (NCBI) | compare |
| b2504 | yfgG | +0.2 | 0.5 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b4388 | serB | +0.2 | 1.9 | 3-phosphoserine phosphatase (NCBI) | compare |
| b4551 | yheV | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b0388 | aroL | +0.2 | 1.6 | shikimate kinase II (NCBI) | compare |
| b2399 | yfeD | +0.2 | 1.5 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0193 | yaeF | +0.2 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1566 | flxA | +0.2 | 1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b1227 | narI | +0.2 | 1.5 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b3361 | fic | +0.2 | 1.8 | stationary-phase protein, cell division (NCBI) | compare |
| b4234 | yjgA | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b2356 | yfdM | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3392 | yrfA | +0.2 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1565 | ydfV | +0.2 | 1.1 | Qin prophage; predicted protein (NCBI) | compare |
| b0550 | rusA | +0.2 | 1.4 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b4444 | rygA | +0.2 | 1.3 | unknown RNA (NCBI) | compare |
| b2488 | hyfH | +0.2 | 1.1 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b2169 | fruB | +0.2 | 1.7 | fused fructose-specific PTS enzymes: IIA component/HPr component (NCBI) | compare |
| b1502 | ydeQ | +0.2 | 0.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2900 | yqfB | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b2535 | csiE | +0.2 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1114 | mfd | +0.2 | 1.8 | transcription-repair coupling factor (NCBI) | compare |
| b1610 | tus | +0.2 | 1.4 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1045 | ymdB | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b4508 | peaD | +0.2 | 1.3 | putative sensory transduction regulator (VIMSS) | compare |
| b1070 | flgN | +0.2 | 0.7 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0862 | artQ | +0.2 | 1.1 | arginine transporter subunit (NCBI) | compare |
| b1907 | tyrP | +0.2 | 1.3 | tyrosine transporter (NCBI) | compare |
| b1410 | ynbC | +0.2 | 1.6 | predicted hydrolase (NCBI) | compare |
| b1823 | cspC | +0.2 | 1.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b1936 | intG | +0.2 | 0.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b4374 | yjjG | +0.2 | 1.9 | nucleotidase (NCBI) | compare |
| b4380 | yjjI | +0.2 | 1.9 | hypothetical protein (NCBI) | compare |
| b2682 | ygaZ | +0.2 | 1.4 | predicted transporter (NCBI) | compare |
| b3725 | pstB | +0.2 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b0518 | fdrA | +0.2 | 1.7 | membrane protein FdrA (NCBI) | compare |
| b2264 | menD | +0.2 | 1.9 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b0714 | nei | +0.2 | 1.3 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b1038 | csgF | +0.2 | 0.9 | predicted transport protein (NCBI) | compare |
| b2408 | yfeN | +0.2 | 1.7 | conserved outer membrane protein (NCBI) | compare |
| b0535 | fimZ | +0.2 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4396 | rob | +0.2 | 2.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b0323 | yahI | +0.2 | 1.7 | predicted carbamate kinase-like protein (NCBI) | compare |
| b4543 | ypaA | +0.2 | 1.1 | predicted protein (NCBI) | compare |
| b0736 | ybgC | +0.2 | 0.8 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b1768 | ydjB | +0.2 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4519 | icdC | +0.2 | 1.1 | no description | compare |
| b2577 | yfiE | +0.2 | 1.3 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b2221 | atoD | +0.2 | 1.1 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b3480 | nikE | +0.2 | 1.8 | nickel transporter subunit (NCBI) | compare |
| b2291 | yfbR | +0.2 | 1.2 | hypothetical protein (NCBI) | compare |
| b1355 | b1355 | +0.2 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1058 | yceO | +0.2 | 0.1 | hypothetical protein (NCBI) | compare |
| b1547 | stfQ | +0.2 | 1.2 | Qin prophage; predicted side tail fibre assembly protein (NCBI) | compare |
| b4042 | dgkA | +0.2 | 0.1 | diacylglycerol kinase (NCBI) | compare |
| b0192 | nlpE | +0.2 | 1.7 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b0443 | ybaW | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b1220 | ychO | +0.2 | 1.2 | predicted invasin (RefSeq) | compare |
| b2959 | yggL | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1607 | ydgC | +0.2 | 0.8 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1875 | yecM | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |