| | gene | name | fitness | t score | description | |
|---|
| b1185 | dsbB | +1.0 | 5.6 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b4538 | yoeF | +1.0 | 3.3 | hypothetical protein (RefSeq) | compare |
| b2934 | cmtB | +1.0 | 0.8 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1831 | proQ | +0.9 | 4.8 | putative solute/DNA competence effector (NCBI) | compare |
| b4603 | rseX | +0.9 | 1.2 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2846 | yqeH | +0.8 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b3860 | dsbA | +0.8 | 7.0 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0798 | ybiA | +0.8 | 2.4 | hypothetical protein (NCBI) | compare |
| b0542 | renD | +0.8 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b0730 | mngR | +0.7 | 1.6 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1332 | ynaJ | +0.7 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b1724 | ydiZ | +0.7 | 1.6 | hypothetical protein (NCBI) | compare |
| b2504 | yfgG | +0.7 | 1.2 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1823 | cspC | +0.7 | 2.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b2616 | recN | +0.7 | 5.3 | recombination and repair protein (NCBI) | compare |
| b1205 | ychH | +0.6 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b0880 | cspD | +0.6 | 2.5 | cold shock protein homolog (NCBI) | compare |
| b1936 | intG | +0.6 | 1.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1882 | cheY | +0.6 | 0.6 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1085 | b1085 | +0.6 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1480 | sra | +0.5 | 1.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1765 | ydjA | +0.5 | 0.9 | predicted oxidoreductase (NCBI) | compare |
| b0617 | citD | +0.5 | 2.0 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1753 | ynjA | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b1476 | fdnI | +0.5 | 0.8 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1195 | ymgE | +0.5 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b0802 | ybiJ | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1434 | ydcN | +0.5 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2156 | lysP | +0.5 | 4.2 | lysine transporter (NCBI) | compare |
| b4480 | hdfR | +0.5 | 2.9 | transcriptional regulator HdfR (NCBI) | compare |
| b2684 | mprA | +0.4 | 2.6 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0623 | cspE | +0.4 | 1.7 | cold shock protein E (NCBI) | compare |
| b1669 | ydhT | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b4505 | insX | +0.4 | 0.8 | predicted IS protein (RefSeq) | compare |
| b0191 | yaeJ | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b4596 | yciZ | +0.4 | 1.3 | hypothetical protein (RefSeq) | compare |
| b3181 | greA | +0.4 | 2.7 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1448 | yncA | +0.4 | 1.5 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4609 | ryfD | +0.4 | 2.3 | Novel sRNA, function unknown (RefSeq) | compare |
| b3764 | yifE | +0.4 | 3.0 | hypothetical protein (NCBI) | compare |
| b1954 | dsrA | +0.4 | 1.8 | regulatory antisense RNA (NCBI) | compare |
| b4699 | fnrS | +0.4 | 0.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4646 | yrdE | +0.4 | 2.1 | no description | compare |
| b2741 | rpoS | +0.4 | 2.8 | RNA polymerase sigma factor (NCBI) | compare |
| b0521 | ybcF | +0.4 | 1.9 | predicted carbamate kinase (NCBI) | compare |
| b4653 | yicT | +0.4 | 1.5 | no description | compare |
| b3206 | npr | +0.4 | 3.0 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4045 | yjbJ | +0.4 | 1.6 | predicted stress response protein (NCBI) | compare |
| b1610 | tus | +0.4 | 2.4 | DNA replication terminus site-binding protein (NCBI) | compare |
| b3100 | yqjK | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1790 | yeaM | +0.4 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1874 | cutC | +0.4 | 0.9 | copper homeostasis protein (NCBI) | compare |
| b1930 | yedF | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b3512 | GadE | +0.4 | 2.2 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1503 | ydeR | +0.4 | 1.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1848 | yebG | +0.4 | 1.0 | conserved protein regulated by LexA (NCBI) | compare |
| b0630 | lipB | +0.4 | 0.6 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2804 | fucU | +0.4 | 1.4 | L-fucose mutarotase (NCBI) | compare |
| b2915 | yqfE | +0.4 | 1.6 | hypothetical protein (RefSeq) | compare |
| b0596 | entA | +0.4 | 2.6 | 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI) | compare |
| b4541 | yehK | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1824 | yobF | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b4686 | yshB | +0.4 | 1.5 | expressed protein (RefSeq) | compare |
| b1422 | ydcI | +0.4 | 2.8 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1081 | flgJ | +0.4 | 2.2 | flagellar biosynthesis protein FlgJ (NCBI) | compare |
| b1305 | pspB | +0.3 | 1.4 | phage shock protein B (NCBI) | compare |
| b0550 | rusA | +0.3 | 1.9 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b1414 | ydcF | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b2217 | rcsB | +0.3 | 2.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1530 | marR | +0.3 | 1.5 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b1955 | yedP | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | +0.3 | 1.6 | cytochrome b(561) (VIMSS) | compare |
| b0183 | rnhB | +0.3 | 1.6 | ribonuclease HII (NCBI) | compare |
| b4551 | yheV | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3627 | rfaI | +0.3 | 2.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2287 | nuoB | +0.3 | 1.8 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3961 | oxyR | +0.3 | 2.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4363 | yjjB | +0.3 | 2.1 | conserved inner membrane protein (RefSeq) | compare |
| b2187 | yejL | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b3248 | yhdE | +0.3 | 2.7 | Maf-like protein (NCBI) | compare |
| b1387 | maoC | +0.3 | 1.7 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b2445 | yffN | +0.3 | 1.0 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2051 | wcaH | +0.3 | 1.0 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1689 | b1689 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0228 | yafM | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1342 | ydaN | +0.3 | 2.0 | zinc transporter (NCBI) | compare |
| b3259 | prmA | +0.3 | 2.0 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b1446 | ydcY | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b0836 | yliH | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b0713 | ybgL | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3260 | dusB | +0.3 | 2.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b4376 | osmY | +0.3 | 1.3 | periplasmic protein (NCBI) | compare |
| b2990 | hybG | +0.3 | 1.1 | hydrogenase 2 accessory protein (NCBI) | compare |
| b2782 | chpA | +0.3 | 1.7 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b2209 | eco | +0.3 | 1.1 | ecotin precursor (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.2 | no description | compare |
| b1520 | b1520 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3622 | rfaL | +0.3 | 1.5 | O-antigen ligase (NCBI) | compare |
| b0942 | ycbU | +0.3 | 1.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1462 | b1462 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1507 | hipA | +0.3 | 1.4 | regulator with hipB (NCBI) | compare |
| b2689 | yqaA | +0.3 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b0754 | aroG | +0.3 | 1.7 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | compare |
| b0456 | ybaA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1758 | b1758 | +0.3 | 0.7 | putative cytochrome oxidase (VIMSS) | compare |
| b3500 | gor | +0.3 | 0.7 | glutathione reductase (NCBI) | compare |
| b4144 | yjeI | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2996 | hybA | +0.3 | 2.4 | hydrogenase 2 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b4418 | sraB | +0.3 | 0.7 | unknown RNA (NCBI) | compare |
| b1380 | ldhA | +0.3 | 1.3 | D-lactate dehydrogenase (NCBI) | compare |
| b1339 | abgR | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1524 | yneH | +0.3 | 0.5 | predicted glutaminase (NCBI) | compare |
| b4492 | ydbA | +0.3 | 2.2 | no description | compare |
| b1904 | yecR | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b1360 | ydaV | +0.3 | 0.8 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b2208 | napF | +0.3 | 1.5 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b2645 | yfjZ | +0.3 | 1.6 | CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b4513 | kdpF | +0.3 | 0.9 | potassium ion accessory transporter subunit (NCBI) | compare |
| b4157 | yjeN | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b2010 | dacD | +0.3 | 2.1 | penicillin binding protein 6b (VIMSS) | compare |
| b4640 | yoeG | +0.3 | 0.9 | no description | compare |
| b2572 | rseA | +0.3 | 1.8 | anti-sigma factor (NCBI) | compare |
| b1415 | aldA | +0.3 | 2.0 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b0852 | rimK | +0.3 | 1.8 | ribosomal protein S6 modification protein (NCBI) | compare |
| b2587 | kgtP | +0.3 | 1.9 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1744 | astE | +0.3 | 1.4 | succinylglutamate desuccinylase (NCBI) | compare |
| b2264 | menD | +0.3 | 2.2 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b2096 | gatY | +0.3 | 1.9 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b0192 | nlpE | +0.3 | 2.1 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b2510 | b2510 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b4515 | ybgT | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b3226 | yhcK | +0.3 | 1.8 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b1613 | manA | +0.3 | 0.9 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b0209 | yafD | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2624 | alpA | +0.3 | 1.9 | CP4-57 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2202 | napC | +0.3 | 1.5 | nitrate reductase, cytochrome c-type, periplasmic (NCBI) | compare |
| b1337 | abgB | +0.3 | 1.5 | predicted peptidase, aminobenzoyl-glutamate utilization protein (NCBI) | compare |
| b4389 | radA | +0.3 | 2.1 | predicted repair protein (NCBI) | compare |
| b4650 | yibS | +0.3 | 1.1 | no description | compare |
| b1144 | ymfJ | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4234 | yjgA | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1644 | b1644 | +0.3 | 1.6 | putative membrane protein (VIMSS) | compare |
| b1053 | mdtG | +0.3 | 1.3 | predicted drug efflux system (NCBI) | compare |
| b3481 | nikR | +0.2 | 2.0 | nickel responsive regulator (NCBI) | compare |
| b1359 | ydaU | +0.2 | 1.5 | Rac prophage; conserved protein (NCBI) | compare |
| b4387 | ytjB | +0.2 | 1.9 | hypothetical protein (NCBI) | compare |
| b1764 | selD | +0.2 | 1.4 | selenophosphate synthetase (NCBI) | compare |
| b0289 | yagV | +0.2 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2016 | yeeZ | +0.2 | 1.6 | predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b4558 | yifL | +0.2 | 1.9 | predicted lipoprotein (NCBI) | compare |
| b1348 | lar | +0.2 | 0.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4561 | insM | +0.2 | 1.8 | transposase (RefSeq) | compare |
| b2165 | yeiN | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b1453 | ansP | +0.2 | 1.6 | L-asparagine permease (VIMSS) | compare |
| b1789 | yeaL | +0.2 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b3624 | rfaZ | +0.2 | 0.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1368 | ynaA | +0.2 | 0.9 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b1421 | trg | +0.2 | 1.2 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1355 | b1355 | +0.2 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0632 | dacA | +0.2 | 1.8 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b1164 | ycgZ | +0.2 | 0.7 | hypothetical protein (NCBI) | compare |
| b2022 | hisB | +0.2 | 1.5 | imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) | compare |
| b1625 | ydgT | +0.2 | 1.5 | predicted regulator (NCBI) | compare |
| b4042 | dgkA | +0.2 | 0.1 | diacylglycerol kinase (NCBI) | compare |
| b2535 | csiE | +0.2 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4481 | rffT | +0.2 | 1.6 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2580 | ung | +0.2 | 1.8 | uracil-DNA glycosylase (NCBI) | compare |
| b0548 | ninE | +0.2 | 1.4 | DLP12 prophage; conserved protein (NCBI) | compare |
| b0863 | artI | +0.2 | 1.4 | arginine transporter subunit (NCBI) | compare |
| b3198 | kdsC | +0.2 | 1.3 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2102 | yegX | +0.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0545 | ybcL | +0.2 | 2.0 | DLP12 prophage; predicted kinase inhibitor (NCBI) | compare |
| b4592 | yccB | +0.2 | 0.8 | hypothetical protein (RefSeq) | compare |
| b4532 | yncN | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3625 | rfaY | +0.2 | 1.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0946 | ycbW | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3836 | b3836 | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2004 | yeeU | +0.2 | 1.4 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b0589 | fepG | +0.2 | 1.7 | iron-enterobactin transporter subunit (NCBI) | compare |
| b3555 | yiaG | +0.2 | 1.1 | predicted transcriptional regulator (NCBI) | compare |
| b1737 | chbC | +0.2 | 1.5 | N,N'-diacetylchitobiose-specific enzyme IIC component of PTS (NCBI) | compare |
| b0731 | mngA | +0.2 | 1.7 | fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component (NCBI) | compare |
| b0851 | nfsA | +0.2 | 1.3 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b4406 | yaeP | +0.2 | 0.8 | hypothetical protein (NCBI) | compare |
| b1478 | adhP | +0.2 | 1.3 | alcohol dehydrogenase (VIMSS) | compare |
| b3199 | yrbK | +0.2 | 0.8 | hypothetical protein (NCBI) | compare |
| b0819 | ybiS | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b2261 | menC | +0.2 | 1.7 | O-succinylbenzoate synthase (NCBI) | compare |
| b4241 | treR | +0.2 | 2.1 | trehalose repressor (NCBI) | compare |
| b4509 | ylcG | +0.2 | 0.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2356 | yfdM | +0.2 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b4658 | yghX | +0.2 | 1.6 | no description | compare |
| b2722 | hycD | +0.2 | 1.5 | hydrogenase 3, membrane subunit (NCBI) | compare |
| b2481 | hyfA | +0.2 | 1.5 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b4218 | ytfL | +0.2 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b1679 | sufE | +0.2 | 0.8 | cysteine desufuration protein SufE (NCBI) | compare |