| | gene | name | fitness | t score | description | |
|---|
| b1185 | dsbB | +2.6 | 12.1 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3979 | thrT | +2.1 | 0.8 | tRNA-Thr (NCBI) | compare |
| b3860 | dsbA | +2.0 | 18.2 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1831 | proQ | +1.2 | 5.9 | putative solute/DNA competence effector (NCBI) | compare |
| b2156 | lysP | +1.2 | 10.6 | lysine transporter (NCBI) | compare |
| b0630 | lipB | +1.0 | 1.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3181 | greA | +0.9 | 4.2 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1361 | ydaW | +0.9 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b3009 | yghB | +0.9 | 6.9 | conserved inner membrane protein (NCBI) | compare |
| b0464 | acrR | +0.9 | 7.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1238 | tdk | +0.8 | 5.2 | thymidine kinase (NCBI) | compare |
| b1765 | ydjA | +0.8 | 1.3 | predicted oxidoreductase (NCBI) | compare |
| b4596 | yciZ | +0.7 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1954 | dsrA | +0.7 | 3.4 | regulatory antisense RNA (NCBI) | compare |
| b1530 | marR | +0.7 | 2.6 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b0929 | ompF | +0.7 | 5.2 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b1480 | sra | +0.7 | 1.6 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b0564 | appY | +0.6 | 1.5 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b1434 | ydcN | +0.6 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4699 | fnrS | +0.6 | 1.0 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1753 | ynjA | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b4505 | insX | +0.6 | 1.1 | predicted IS protein (RefSeq) | compare |
| b1476 | fdnI | +0.6 | 1.0 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1686 | ydiI | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b1936 | intG | +0.6 | 1.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0310 | ykgH | +0.6 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b0191 | yaeJ | +0.6 | 4.4 | hypothetical protein (NCBI) | compare |
| b2096 | gatY | +0.6 | 3.1 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1348 | lar | +0.5 | 1.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4045 | yjbJ | +0.5 | 1.3 | predicted stress response protein (NCBI) | compare |
| b0730 | mngR | +0.5 | 1.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3026 | qseC | +0.5 | 2.1 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3396 | mrcA | +0.5 | 5.0 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b2934 | cmtB | +0.5 | 0.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0683 | fur | +0.5 | 0.8 | ferric uptake regulator (NCBI) | compare |
| b1824 | yobF | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1195 | ymgE | +0.5 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b1731 | cedA | +0.5 | 2.2 | cell division modulator (RefSeq) | compare |
| b4538 | yoeF | +0.5 | 1.3 | hypothetical protein (RefSeq) | compare |
| b3120 | yhaB | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2741 | rpoS | +0.5 | 3.2 | RNA polymerase sigma factor (NCBI) | compare |
| b0998 | torD | +0.4 | 1.0 | chaperone protein TorD (NCBI) | compare |
| b3512 | GadE | +0.4 | 2.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1742 | b1742 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4551 | yheV | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b2684 | mprA | +0.4 | 2.7 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0843 | ybjH | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1739 | osmE | +0.4 | 2.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b2916 | argP | +0.4 | 2.6 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b0802 | ybiJ | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2264 | menD | +0.4 | 3.3 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b0209 | yafD | +0.4 | 3.3 | hypothetical protein (NCBI) | compare |
| b4618 | tisB | +0.4 | 2.2 | lexA-regulated toxic peptide (RefSeq) | compare |
| b4089 | rpiR | +0.4 | 3.8 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b0535 | fimZ | +0.4 | 2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3147 | yraM | +0.4 | 3.8 | hypothetical protein (NCBI) | compare |
| b1183 | umuD | +0.4 | 1.3 | DNA polymerase V, subunit D (NCBI) | compare |
| b3628 | rfaB | +0.4 | 3.6 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1233 | ychJ | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b4241 | treR | +0.4 | 3.6 | trehalose repressor (NCBI) | compare |
| b2261 | menC | +0.4 | 2.6 | O-succinylbenzoate synthase (NCBI) | compare |
| b1726 | yniB | +0.4 | 0.7 | predicted inner membrane protein (NCBI) | compare |
| b4515 | ybgT | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b0648 | ybeU | +0.4 | 2.7 | predicted tRNA ligase (NCBI) | compare |
| b1841 | yobA | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b0848 | ybjM | +0.4 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b0393 | rdgC | +0.4 | 3.0 | recombination associated protein (NCBI) | compare |
| b2535 | csiE | +0.4 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4367 | fhuF | +0.4 | 2.7 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b2217 | rcsB | +0.4 | 2.9 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1299 | puuR | +0.4 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4063 | soxR | +0.4 | 2.0 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b1724 | ydiZ | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b4157 | yjeN | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b4573 | insZ | +0.3 | 1.7 | no description | compare |
| b4656 | yjhY | +0.3 | 2.0 | no description | compare |
| b3844 | fre | +0.3 | 2.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.9 | conserved inner membrane protein (RefSeq) | compare |
| b2618 | b2618 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4341 | yjiS | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b2250 | b2250 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1143 | ymfI | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1164 | ycgZ | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b1625 | ydgT | +0.3 | 2.3 | predicted regulator (NCBI) | compare |
| b1930 | yedF | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b4410 | ecnA | +0.3 | 0.9 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b1847 | yebF | +0.3 | 0.6 | predicted protein (RefSeq) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2587 | kgtP | +0.3 | 2.4 | alpha-ketoglutarate transporter (NCBI) | compare |
| b0613 | citG | +0.3 | 1.4 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b0909 | ycaL | +0.3 | 1.9 | putative heat shock protein (VIMSS) | compare |
| b1448 | yncA | +0.3 | 1.1 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4381 | deoC | +0.3 | 2.2 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b2700 | ygaD | +0.3 | 1.1 | competence damage-inducible protein A (NCBI) | compare |
| b1566 | flxA | +0.3 | 1.6 | Qin prophage; predicted protein (NCBI) | compare |
| b0183 | rnhB | +0.3 | 0.9 | ribonuclease HII (NCBI) | compare |
| b1070 | flgN | +0.3 | 0.8 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b2208 | napF | +0.3 | 2.2 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b1558 | cspF | +0.3 | 1.3 | Qin prophage; cold shock protein (NCBI) | compare |
| b2209 | eco | +0.3 | 0.9 | ecotin precursor (NCBI) | compare |
| b3027 | ygiZ | +0.3 | 0.2 | conserved inner membrane protein (NCBI) | compare |
| b2804 | fucU | +0.3 | 1.5 | L-fucose mutarotase (NCBI) | compare |
| b2435 | amiA | +0.3 | 1.7 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b0521 | ybcF | +0.3 | 2.2 | predicted carbamate kinase (NCBI) | compare |
| b1342 | ydaN | +0.3 | 1.9 | zinc transporter (NCBI) | compare |
| b0542 | renD | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0418 | pgpA | +0.3 | 1.6 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b4579 | yaiX | +0.3 | 1.9 | no description | compare |
| b2288 | nuoA | +0.3 | 1.1 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0294 | ykgK | +0.3 | 1.6 | predicted regulator (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b0456 | ybaA | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.4 | no description | compare |
| b1427 | rimL | +0.3 | 1.2 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b2177 | yejA | +0.3 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4376 | osmY | +0.3 | 1.9 | periplasmic protein (NCBI) | compare |
| b1789 | yeaL | +0.3 | 1.4 | conserved inner membrane protein (NCBI) | compare |
| b1502 | ydeQ | +0.3 | 1.0 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1800 | yeaU | +0.3 | 2.1 | predicted dehydrogenase (NCBI) | compare |
| b4457 | csrC | +0.3 | 1.4 | regulatory RNA (NCBI) | compare |
| b1000 | cbpA | +0.3 | 1.9 | curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK (NCBI) | compare |
| b4660 | yhiL | +0.3 | 0.2 | no description | compare |
| b2010 | dacD | +0.3 | 2.1 | penicillin binding protein 6b (VIMSS) | compare |
| b3074 | ygjH | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2749 | ygbE | +0.3 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.0 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b4032 | malG | +0.3 | 1.7 | maltose transporter subunit (NCBI) | compare |
| b2809 | b2809 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3725 | pstB | +0.3 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b4513 | kdpF | +0.3 | 0.8 | potassium ion accessory transporter subunit (NCBI) | compare |
| b1315 | ycjS | +0.3 | 2.0 | predicted oxidoreductase, NADH-binding (NCBI) | compare |
| b3236 | mdh | +0.3 | 2.1 | malate dehydrogenase (NCBI) | compare |
| b3516 | gadX | +0.3 | 2.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4676 | yoaK | +0.3 | 0.3 | expressed protein (RefSeq) | compare |
| b4484 | cpxP | +0.3 | 2.3 | periplasmic protein combats stress (NCBI) | compare |
| b2287 | nuoB | +0.3 | 1.3 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3506 | slp | +0.3 | 2.4 | outer membrane protein induced after carbon starvation (VIMSS) | compare |
| b3624 | rfaZ | +0.3 | 1.0 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0245 | ykfI | +0.3 | 2.0 | CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system (NCBI) | compare |
| b2969 | yghE | +0.3 | 1.8 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b1151 | ymfO | +0.3 | 1.3 | e14 prophage; conserved protein (RefSeq) | compare |
| b4387 | ytjB | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b0973 | hyaB | +0.3 | 1.8 | hydrogenase 1, large subunit (NCBI) | compare |
| b0896 | dmsC | +0.3 | 2.1 | dimethyl sulfoxide reductase, anaerobic, subunit C (NCBI) | compare |
| b0934 | ycbM | +0.3 | 1.4 | putative transport system permease protein (VIMSS) | compare |
| b1573 | ydfC | +0.3 | 0.7 | Qin prophage; predicted protein (RefSeq) | compare |
| b4313 | fimE | +0.3 | 2.1 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b3723 | bglG | +0.3 | 1.7 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b0928 | aspC | +0.3 | 1.7 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b4561 | insM | +0.3 | 1.6 | transposase (RefSeq) | compare |
| b4646 | yrdE | +0.3 | 1.0 | no description | compare |
| b2673 | nrdH | +0.3 | 1.5 | glutaredoxin-like protein (NCBI) | compare |
| b1287 | yciW | +0.3 | 1.1 | putative oxidoreductase (VIMSS) | compare |
| b3194 | yrbE | +0.2 | 2.1 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1344 | ydaO | +0.2 | 1.3 | predicted C32 tRNA thiolase (NCBI) | compare |
| b1661 | cfa | +0.2 | 1.6 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b3347 | fkpA | +0.2 | 2.3 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b1382 | ynbE | +0.2 | 0.7 | predicted lipoprotein (NCBI) | compare |
| b4471 | tdcG | +0.2 | 2.3 | L-serine dehydratase 3 (NCBI) | compare |
| b4441 | glmY | +0.2 | 0.8 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b1227 | narI | +0.2 | 1.4 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b1083 | flgL | +0.2 | 1.2 | flagellar hook-associated protein L (NCBI) | compare |
| b0192 | nlpE | +0.2 | 1.7 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b4144 | yjeI | +0.2 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2488 | hyfH | +0.2 | 1.2 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b0193 | yaeF | +0.2 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2260 | menE | +0.2 | 2.1 | O-succinylbenzoic acid--CoA ligase (NCBI) | compare |
| b1013 | ycdC | +0.2 | 0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2993 | hybD | +0.2 | 1.7 | predicted maturation element for hydrogenase 2 (NCBI) | compare |
| b1349 | recT | +0.2 | 1.8 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b4345 | mcrC | +0.2 | 0.5 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b0713 | ybgL | +0.2 | 1.8 | hypothetical protein (NCBI) | compare |
| b0942 | ycbU | +0.2 | 1.7 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2095 | gatZ | +0.2 | 1.7 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b0443 | ybaW | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b3507 | dctR | +0.2 | 2.2 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b1421 | trg | +0.2 | 1.4 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b0447 | ybaO | +0.2 | 1.8 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b2995 | hybB | +0.2 | 2.1 | predicted hydrogenase 2 cytochrome b type component (NCBI) | compare |
| b0933 | ssuB | +0.2 | 0.9 | alkanesulfonate transporter subunit (NCBI) | compare |
| b0996 | torC | +0.2 | 1.7 | trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit (NCBI) | compare |
| b3280 | yrdB | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b2180 | yejF | +0.2 | 2.0 | fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components (NCBI) | compare |
| b0561 | tfaD | +0.2 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0213 | yafS | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3191 | yrbB | +0.2 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4280 | yjhC | +0.2 | 1.8 | putative dehydrogenase (VIMSS) | compare |
| b1305 | pspB | +0.2 | 0.9 | phage shock protein B (NCBI) | compare |
| b1709 | btuD | +0.2 | 0.4 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1220 | ychO | +0.2 | 1.6 | predicted invasin (RefSeq) | compare |
| b0617 | citD | +0.2 | 0.9 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b3622 | rfaL | +0.2 | 1.2 | O-antigen ligase (NCBI) | compare |
| b1805 | fadD | +0.2 | 1.8 | acyl-CoA synthase (NCBI) | compare |
| b2996 | hybA | +0.2 | 1.8 | hydrogenase 2 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b2014 | yeeF | +0.2 | 1.6 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1604 | ydgH | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b2686 | emrB | +0.2 | 1.9 | multidrug efflux system protein (NCBI) | compare |
| b4458 | oxyS | +0.2 | 0.4 | global regulatory RNA (NCBI) | compare |
| b2019 | hisG | +0.2 | 1.4 | ATP phosphoribosyltransferase (NCBI) | compare |