| | gene | name | fitness | t score | description | |
|---|
| b0630 | lipB | +1.4 | 2.7 | protein of lipoate biosynthesis (VIMSS) | compare |
| b0730 | mngR | +1.4 | 3.2 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1185 | dsbB | +1.3 | 6.9 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3860 | dsbA | +1.1 | 9.6 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1831 | proQ | +0.8 | 2.5 | putative solute/DNA competence effector (NCBI) | compare |
| b1476 | fdnI | +0.8 | 1.4 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1205 | ychH | +0.8 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b1954 | dsrA | +0.7 | 3.4 | regulatory antisense RNA (NCBI) | compare |
| b1724 | ydiZ | +0.7 | 1.4 | hypothetical protein (NCBI) | compare |
| b0843 | ybjH | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b3512 | GadE | +0.7 | 4.0 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4596 | yciZ | +0.7 | 1.9 | hypothetical protein (RefSeq) | compare |
| b4699 | fnrS | +0.7 | 1.1 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1524 | yneH | +0.6 | 1.2 | predicted glutaminase (NCBI) | compare |
| b4538 | yoeF | +0.6 | 2.0 | hypothetical protein (RefSeq) | compare |
| b1195 | ymgE | +0.6 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b3181 | greA | +0.6 | 4.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2156 | lysP | +0.6 | 5.0 | lysine transporter (NCBI) | compare |
| b0798 | ybiA | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1144 | ymfJ | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1179 | ycgL | +0.5 | 2.3 | conserved protein (NCBI) | compare |
| b3027 | ygiZ | +0.5 | 0.3 | conserved inner membrane protein (NCBI) | compare |
| b1453 | ansP | +0.5 | 2.9 | L-asparagine permease (VIMSS) | compare |
| b3009 | yghB | +0.5 | 3.1 | conserved inner membrane protein (NCBI) | compare |
| b1448 | yncA | +0.5 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2071 | yegJ | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b4646 | yrdE | +0.4 | 2.2 | no description | compare |
| b4431 | rprA | +0.4 | 1.7 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b4640 | yoeG | +0.4 | 1.7 | no description | compare |
| b1434 | ydcN | +0.4 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1348 | lar | +0.4 | 1.6 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1742 | b1742 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1442 | ydcU | +0.4 | 2.3 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 3.2 | hypothetical protein (NCBI) | compare |
| b2217 | rcsB | +0.4 | 3.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1739 | osmE | +0.4 | 1.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b1824 | yobF | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b4157 | yjeN | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b0407 | yajC | +0.4 | 1.1 | preprotein translocase subunit YajC (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3250 | mreC | +0.4 | 1.1 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b4613 | dinQ | +0.4 | 1.5 | Damage inducible, function unknown (RefSeq) | compare |
| b3236 | mdh | +0.4 | 3.4 | malate dehydrogenase (NCBI) | compare |
| b1792 | yeaO | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2741 | rpoS | +0.4 | 3.0 | RNA polymerase sigma factor (NCBI) | compare |
| b1427 | rimL | +0.4 | 2.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b2187 | yejL | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b2587 | kgtP | +0.4 | 2.4 | alpha-ketoglutarate transporter (NCBI) | compare |
| b0542 | renD | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1038 | csgF | +0.4 | 1.7 | predicted transport protein (NCBI) | compare |
| b1461 | ydcE | +0.4 | 2.0 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b2208 | napF | +0.4 | 1.8 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b3037 | ygiB | +0.4 | 2.2 | conserved outer membrane protein (RefSeq) | compare |
| b1415 | aldA | +0.4 | 2.4 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b4480 | hdfR | +0.4 | 2.6 | transcriptional regulator HdfR (NCBI) | compare |
| b1357 | ydaS | +0.4 | 1.5 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1382 | ynbE | +0.4 | 1.1 | predicted lipoprotein (NCBI) | compare |
| b1446 | ydcY | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1823 | cspC | +0.4 | 1.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b3153 | yhbO | +0.4 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b4503 | yafF | +0.4 | 0.6 | no description | compare |
| b3261 | fis | +0.4 | 0.7 | DNA-binding protein Fis (NCBI) | compare |
| b2202 | napC | +0.4 | 2.1 | nitrate reductase, cytochrome c-type, periplasmic (NCBI) | compare |
| b1610 | tus | +0.4 | 2.3 | DNA replication terminus site-binding protein (NCBI) | compare |
| b2616 | recN | +0.4 | 2.8 | recombination and repair protein (NCBI) | compare |
| b4042 | dgkA | +0.4 | 0.2 | diacylglycerol kinase (NCBI) | compare |
| b2398 | yfeC | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1143 | ymfI | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4585 | sroB | +0.4 | 0.9 | Novel sRNA, function unknown (RefSeq) | compare |
| b1387 | maoC | +0.4 | 2.4 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b4492 | ydbA | +0.4 | 2.9 | no description | compare |
| b0183 | rnhB | +0.4 | 2.5 | ribonuclease HII (NCBI) | compare |
| b0521 | ybcF | +0.3 | 2.5 | predicted carbamate kinase (NCBI) | compare |
| b1463 | nhoA | +0.3 | 2.5 | N-hydroxyarylamine O-acetyltransferase (NCBI) | compare |
| b1414 | ydcF | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b1350 | recE | +0.3 | 2.4 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b2163 | yeiL | +0.3 | 2.2 | putative transcriptional regulator (VIMSS) | compare |
| b1152 | ymfP | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0880 | cspD | +0.3 | 1.4 | cold shock protein homolog (NCBI) | compare |
| b1930 | yedF | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b4218 | ytfL | +0.3 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b1487 | ddpA | +0.3 | 2.0 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b0464 | acrR | +0.3 | 3.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2264 | menD | +0.3 | 2.7 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b1613 | manA | +0.3 | 1.1 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1882 | cheY | +0.3 | 0.4 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1063 | yceB | +0.3 | 1.8 | predicted lipoprotein (NCBI) | compare |
| b4394 | yjjX | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1344 | ydaO | +0.3 | 1.2 | predicted C32 tRNA thiolase (NCBI) | compare |
| b1408 | b1408 | +0.3 | 1.9 | probable enzyme (VIMSS) | compare |
| b1418 | cybB | +0.3 | 1.3 | cytochrome b(561) (VIMSS) | compare |
| b4693 | aaaE | +0.3 | 2.2 | no description | compare |
| b4551 | yheV | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1764 | selD | +0.3 | 2.4 | selenophosphate synthetase (NCBI) | compare |
| b4660 | yhiL | +0.3 | 0.2 | no description | compare |
| b0846 | ybjK | +0.3 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.4 | no description | compare |
| b3021 | ygiT | +0.3 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1411 | ynbD | +0.3 | 2.1 | predicted phosphatase, inner membrane protein (NCBI) | compare |
| b4686 | yshB | +0.3 | 1.5 | expressed protein (RefSeq) | compare |
| b3627 | rfaI | +0.3 | 2.7 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2435 | amiA | +0.3 | 1.8 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b4515 | ybgT | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b1419 | ydcA | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b3858 | yihD | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1936 | intG | +0.3 | 0.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0929 | ompF | +0.3 | 2.0 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b1421 | trg | +0.3 | 2.2 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1233 | ychJ | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1753 | ynjA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b0623 | cspE | +0.3 | 1.1 | cold shock protein E (NCBI) | compare |
| b2051 | wcaH | +0.3 | 0.9 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b1633 | nth | +0.3 | 1.8 | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | compare |
| b1530 | marR | +0.3 | 1.4 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b1469 | narU | +0.3 | 1.9 | nitrate/nitrite transporter (NCBI) | compare |
| b3504 | yhiS | +0.3 | 0.2 | hypothetical protein (RefSeq) | compare |
| b1744 | astE | +0.3 | 2.2 | succinylglutamate desuccinylase (NCBI) | compare |
| b2911 | ssrS | +0.3 | 1.0 | 6S regulatory RNA (NCBI) | compare |
| b1686 | ydiI | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b3100 | yqjK | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b2532 | yfhQ | +0.3 | 2.0 | predicted methyltransferase (NCBI) | compare |
| b2572 | rseA | +0.3 | 1.9 | anti-sigma factor (NCBI) | compare |
| b0613 | citG | +0.3 | 2.1 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b3790 | rffC | +0.3 | 1.9 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0933 | ssuB | +0.3 | 1.6 | alkanesulfonate transporter subunit (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.3 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1527 | yneK | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4529 | ydbJ | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b2356 | yfdM | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1070 | flgN | +0.3 | 0.8 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3623 | rfaK | +0.3 | 1.0 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b3870 | glnA | +0.3 | 1.4 | glutamine synthetase (NCBI) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b3120 | yhaB | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1342 | ydaN | +0.3 | 1.9 | zinc transporter (NCBI) | compare |
| b4450 | arcZ | +0.3 | 1.8 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b2672 | ygaM | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2433 | b2433 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1961 | dcm | +0.3 | 0.6 | DNA cytosine methylase (NCBI) | compare |
| b2261 | menC | +0.3 | 1.7 | O-succinylbenzoate synthase (NCBI) | compare |
| b0726 | sucA | +0.3 | 1.2 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b2010 | dacD | +0.3 | 2.0 | penicillin binding protein 6b (VIMSS) | compare |
| b2618 | b2618 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2586 | yfiM | +0.3 | 0.9 | predicted protein (RefSeq) | compare |
| b2419 | yfeK | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b1976 | b1976 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1467 | narY | +0.3 | 2.0 | nitrate reductase 2 (NRZ), beta subunit (NCBI) | compare |
| b2209 | eco | +0.3 | 0.8 | ecotin precursor (NCBI) | compare |
| b2096 | gatY | +0.3 | 1.8 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1238 | tdk | +0.3 | 1.7 | thymidine kinase (NCBI) | compare |
| b2248 | yfaX | +0.3 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2708 | gutQ | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1384 | feaR | +0.3 | 1.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b0393 | rdgC | +0.3 | 2.1 | recombination associated protein (NCBI) | compare |
| b0209 | yafD | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1795 | yeaQ | +0.3 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b3248 | yhdE | +0.3 | 2.1 | Maf-like protein (NCBI) | compare |
| b0192 | nlpE | +0.3 | 1.9 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b1429 | tehA | +0.3 | 0.4 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b4609 | ryfD | +0.3 | 1.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b4363 | yjjB | +0.3 | 1.3 | conserved inner membrane protein (RefSeq) | compare |
| b0447 | ybaO | +0.3 | 2.1 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b4369 | leuP | +0.3 | 1.4 | tRNA-Leu (NCBI) | compare |
| b1625 | ydgT | +0.3 | 1.7 | predicted regulator (NCBI) | compare |
| b1790 | yeaM | +0.3 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1558 | cspF | +0.3 | 1.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b2481 | hyfA | +0.3 | 1.7 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b1172 | ymgG | +0.3 | 1.7 | conserved protein, UPF0757 family (RefSeq) | compare |
| b1383 | ydbL | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1074 | flgC | +0.3 | 1.1 | flagellar basal-body rod protein C (NCBI) | compare |
| b1768 | ydjB | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1462 | b1462 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3889 | yiiE | +0.3 | 1.1 | predicted transcriptional regulator (RefSeq) | compare |
| b0178 | hlpA | +0.2 | 1.3 | periplasmic chaperone (NCBI) | compare |
| b2682 | ygaZ | +0.2 | 1.5 | predicted transporter (NCBI) | compare |
| b0296 | ykgM | +0.2 | 1.6 | 50S ribosomal protein L31 (NCBI) | compare |
| b4675 | yoaJ | +0.2 | 1.0 | expressed protein (RefSeq) | compare |
| b2362 | yfdS | +0.2 | 1.2 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1368 | ynaA | +0.2 | 1.2 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b1481 | b1481 | +0.2 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3507 | dctR | +0.2 | 2.3 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b4410 | ecnA | +0.2 | 0.7 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b1424 | mdoD | +0.2 | 1.6 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b0388 | aroL | +0.2 | 1.8 | shikimate kinase II (NCBI) | compare |
| b0018 | mokC | +0.2 | 0.7 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4573 | insZ | +0.2 | 1.6 | no description | compare |
| b2736 | ygbJ | +0.2 | 1.4 | predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b1485 | ddpC | +0.2 | 1.6 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b2058 | wcaB | +0.2 | 0.6 | predicted acyl transferase (NCBI) | compare |
| b1490 | yddV | +0.2 | 1.4 | predicted diguanylate cyclase (RefSeq) | compare |
| b3006 | exbB | +0.2 | 1.8 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b3280 | yrdB | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b1072 | flgA | +0.2 | 1.0 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b1948 | fliP | +0.2 | 1.6 | flagellar biosynthesis protein P (NCBI) | compare |
| b0736 | ybgC | +0.2 | 1.0 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b1858 | znuC | +0.2 | 1.6 | high-affinity zinc transporter ATPase (NCBI) | compare |
| b1892 | flhD | +0.2 | 1.6 | DNA-binding transcriptional dual regulator with FlhC (RefSeq) | compare |