| | gene | name | fitness | t score | description | |
|---|
| b3860 | dsbA | +1.0 | 8.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1361 | ydaW | +1.0 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1185 | dsbB | +1.0 | 5.2 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1831 | proQ | +0.6 | 2.6 | putative solute/DNA competence effector (NCBI) | compare |
| b0798 | ybiA | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b1195 | ymgE | +0.6 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b4481 | rffT | +0.6 | 4.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1305 | pspB | +0.6 | 2.3 | phage shock protein B (NCBI) | compare |
| b2156 | lysP | +0.6 | 5.3 | lysine transporter (NCBI) | compare |
| b3790 | rffC | +0.6 | 4.3 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b1348 | lar | +0.6 | 1.9 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1480 | sra | +0.6 | 1.9 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b3021 | ygiT | +0.6 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4505 | insX | +0.6 | 1.3 | predicted IS protein (RefSeq) | compare |
| b2934 | cmtB | +0.5 | 0.5 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1882 | cheY | +0.5 | 0.6 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b0542 | renD | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4596 | yciZ | +0.5 | 1.2 | hypothetical protein (RefSeq) | compare |
| b4551 | yheV | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b1742 | b1742 | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3786 | rffE | +0.5 | 4.3 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b4345 | mcrC | +0.5 | 1.0 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1765 | ydjA | +0.5 | 0.8 | predicted oxidoreductase (NCBI) | compare |
| b3623 | rfaK | +0.5 | 1.7 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b0183 | rnhB | +0.5 | 2.8 | ribonuclease HII (NCBI) | compare |
| b4128 | yjdK | +0.5 | 0.4 | hypothetical protein (NCBI) | compare |
| b1823 | cspC | +0.5 | 1.5 | stress protein, member of the CspA-family (NCBI) | compare |
| b2208 | napF | +0.4 | 2.2 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b0998 | torD | +0.4 | 1.0 | chaperone protein TorD (NCBI) | compare |
| b1476 | fdnI | +0.4 | 0.7 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1954 | dsrA | +0.4 | 2.0 | regulatory antisense RNA (NCBI) | compare |
| b3787 | rffD | +0.4 | 3.7 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1724 | ydiZ | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1558 | cspF | +0.4 | 1.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b2187 | yejL | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3624 | rfaZ | +0.4 | 1.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2481 | hyfA | +0.4 | 2.9 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b3784 | rfe | +0.4 | 3.6 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1566 | flxA | +0.4 | 2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1533 | ydeD | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1346 | ydaQ | +0.4 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b2433 | b2433 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0802 | ybiJ | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b0218 | yafU | +0.4 | 1.5 | predicted inner membrane protein (RefSeq) | compare |
| b3396 | mrcA | +0.4 | 3.6 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b2504 | yfgG | +0.4 | 0.8 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b4704 | arrS | +0.4 | 0.2 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1183 | umuD | +0.4 | 1.3 | DNA polymerase V, subunit D (NCBI) | compare |
| b1144 | ymfJ | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1273 | yciN | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b3794 | rffM | +0.4 | 2.7 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1758 | b1758 | +0.4 | 0.9 | putative cytochrome oxidase (VIMSS) | compare |
| b0730 | mngR | +0.4 | 0.7 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.1 | no description | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b0946 | ycbW | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2809 | b2809 | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2419 | yfeK | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b3791 | rffA | +0.3 | 2.5 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b2743 | pcm | +0.3 | 1.8 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b1252 | tonB | +0.3 | 1.5 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1919 | yedO | +0.3 | 1.2 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b4277 | yjgZ | +0.3 | 2.6 | KpLE2 phage-like element; predicted protein (NCBI) | compare |
| b3163 | nlpI | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b2193 | narP | +0.3 | 2.3 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b1485 | ddpC | +0.3 | 1.8 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b0114 | aceE | +0.3 | 0.8 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b3147 | yraM | +0.3 | 3.0 | hypothetical protein (NCBI) | compare |
| b1686 | ydiI | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b4538 | yoeF | +0.3 | 0.9 | hypothetical protein (RefSeq) | compare |
| b2510 | b2510 | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4157 | yjeN | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1357 | ydaS | +0.3 | 1.3 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4042 | dgkA | +0.3 | 0.2 | diacylglycerol kinase (NCBI) | compare |
| b3238 | yhcN | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1332 | ynaJ | +0.3 | 0.3 | predicted inner membrane protein (NCBI) | compare |
| b2532 | yfhQ | +0.3 | 2.0 | predicted methyltransferase (NCBI) | compare |
| b2792 | yqcC | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b0429 | cyoD | +0.3 | 1.5 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b3027 | ygiZ | +0.3 | 0.2 | conserved inner membrane protein (NCBI) | compare |
| b2399 | yfeD | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1930 | yedF | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4441 | glmY | +0.3 | 1.0 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b4520 | ymgF | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1007 | b1007 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0101 | yacG | +0.3 | 1.6 | zinc-binding protein (NCBI) | compare |
| b1085 | b1085 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4519 | icdC | +0.3 | 1.7 | no description | compare |
| b1233 | ychJ | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1955 | yedP | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b4603 | rseX | +0.3 | 0.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1205 | ychH | +0.3 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b0210 | yafE | +0.3 | 1.2 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b2409 | yfeR | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0852 | rimK | +0.3 | 2.1 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0580 | ybdJ | +0.3 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b4480 | hdfR | +0.3 | 1.8 | transcriptional regulator HdfR (NCBI) | compare |
| b1227 | narI | +0.3 | 1.5 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b3037 | ygiB | +0.3 | 1.8 | conserved outer membrane protein (RefSeq) | compare |
| b1976 | b1976 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2579 | yfiD | +0.3 | 0.9 | pyruvate formate lyase subunit (NCBI) | compare |
| b1557 | cspB | +0.3 | 0.6 | Qin prophage; cold shock protein (NCBI) | compare |
| b2261 | menC | +0.3 | 2.0 | O-succinylbenzoate synthase (NCBI) | compare |
| b1418 | cybB | +0.3 | 1.4 | cytochrome b(561) (VIMSS) | compare |
| b2023 | hisH | +0.3 | 1.8 | imidazole glycerol phosphate synthase subunit HisH (NCBI) | compare |
| b0641 | rlpB | +0.3 | 1.0 | minor lipoprotein (NCBI) | compare |
| b4573 | insZ | +0.3 | 1.6 | no description | compare |
| b0819 | ybiS | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.3 | no description | compare |
| b3512 | GadE | +0.3 | 1.7 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1847 | yebF | +0.3 | 0.6 | predicted protein (RefSeq) | compare |
| b4699 | fnrS | +0.3 | 0.4 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1342 | ydaN | +0.3 | 1.7 | zinc transporter (NCBI) | compare |
| b2488 | hyfH | +0.3 | 1.0 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b1249 | cls | +0.3 | 1.8 | cardiolipin synthetase (NCBI) | compare |
| b0209 | yafD | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | +0.3 | 0.4 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1830 | prc | +0.3 | 1.8 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1672 | ydhW | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2500 | purN | +0.3 | 1.7 | phosphoribosylglycinamide formyltransferase (NCBI) | compare |
| b0393 | rdgC | +0.3 | 2.1 | recombination associated protein (NCBI) | compare |
| b2998 | yghW | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b0388 | aroL | +0.3 | 1.7 | shikimate kinase II (NCBI) | compare |
| b1562 | hokD | +0.3 | 1.2 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b0247 | ykfG | +0.3 | 0.7 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b3206 | npr | +0.3 | 1.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4376 | osmY | +0.3 | 1.4 | periplasmic protein (NCBI) | compare |
| b0714 | nei | +0.3 | 1.5 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b1625 | ydgT | +0.3 | 1.7 | predicted regulator (NCBI) | compare |
| b1448 | yncA | +0.2 | 1.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3152 | yraR | +0.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4418 | sraB | +0.2 | 0.4 | unknown RNA (NCBI) | compare |
| b3723 | bglG | +0.2 | 1.7 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b2096 | gatY | +0.2 | 1.5 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1074 | flgC | +0.2 | 1.1 | flagellar basal-body rod protein C (NCBI) | compare |
| b1469 | narU | +0.2 | 1.3 | nitrate/nitrite transporter (NCBI) | compare |
| b2962 | yggX | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b1961 | dcm | +0.2 | 0.5 | DNA cytosine methylase (NCBI) | compare |
| b1421 | trg | +0.2 | 1.5 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1600 | mdtJ | +0.2 | 0.7 | multidrug efflux system transporter (NCBI) | compare |
| b1153 | ymfQ | +0.2 | 0.9 | e14 prophage; conserved protein (NCBI) | compare |
| b1113 | ycfS | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b3775 | ppiC | +0.2 | 1.3 | peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) | compare |
| b1660 | ydhC | +0.2 | 1.3 | predicted transporter (NCBI) | compare |
| b0942 | ycbU | +0.2 | 1.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2199 | ccmC | +0.2 | 1.5 | heme exporter subunit (NCBI) | compare |
| b0521 | ybcF | +0.2 | 1.4 | predicted carbamate kinase (NCBI) | compare |
| b1586 | b1586 | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0456 | ybaA | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b2486 | hyfF | +0.2 | 1.7 | NADH dehydrogenase subunit N (NCBI) | compare |
| b3476 | nikA | +0.2 | 2.0 | nickel transporter subunit (NCBI) | compare |
| b1251 | yciI | +0.2 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2587 | kgtP | +0.2 | 1.7 | alpha-ketoglutarate transporter (NCBI) | compare |
| b0944 | ycbF | +0.2 | 1.6 | putative chaperone (VIMSS) | compare |
| b3622 | rfaL | +0.2 | 1.3 | O-antigen ligase (NCBI) | compare |
| b4367 | fhuF | +0.2 | 1.8 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b2741 | rpoS | +0.2 | 1.6 | RNA polymerase sigma factor (NCBI) | compare |
| b4592 | yccB | +0.2 | 0.8 | hypothetical protein (RefSeq) | compare |
| b2388 | glk | +0.2 | 1.6 | glucokinase (NCBI) | compare |
| b2368 | emrK | +0.2 | 1.8 | EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI) | compare |
| b1238 | tdk | +0.2 | 1.5 | thymidine kinase (NCBI) | compare |
| b1663 | mdtK | +0.2 | 1.6 | multidrug efflux protein NorM (NCBI) | compare |
| b4360 | yjjA | +0.2 | 1.3 | putative glycoprotein/receptor (VIMSS) | compare |
| b2302 | yfcG | +0.2 | 1.7 | predicted glutathione S-transferase (NCBI) | compare |
| b1325 | ycjG | +0.2 | 1.0 | putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) | compare |
| b0245 | ykfI | +0.2 | 1.8 | CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system (NCBI) | compare |
| b2535 | csiE | +0.2 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1299 | puuR | +0.2 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1399 | paaX | +0.2 | 1.4 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b4686 | yshB | +0.2 | 0.9 | expressed protein (RefSeq) | compare |
| b1248 | b1248 | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4698 | mgrR | +0.2 | 1.2 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b2804 | fucU | +0.2 | 1.2 | L-fucose mutarotase (NCBI) | compare |
| b3626 | rfaJ | +0.2 | 1.5 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b0547 | ybcN | +0.2 | 1.5 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1768 | ydjB | +0.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1776 | ydjL | +0.2 | 1.4 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b4511 | ybdZ | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b2996 | hybA | +0.2 | 1.9 | hydrogenase 2 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b4532 | yncN | +0.2 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1511 | ydeV | +0.2 | 1.2 | putative kinase (VIMSS) | compare |
| b1848 | yebG | +0.2 | 0.6 | conserved protein regulated by LexA (NCBI) | compare |
| b2014 | yeeF | +0.2 | 1.4 | putative amino acid/amine transport protein (VIMSS) | compare |
| b4000 | hupA | +0.2 | 1.5 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b4656 | yjhY | +0.2 | 1.3 | no description | compare |
| b2154 | yeiG | +0.2 | 1.2 | predicted esterase (NCBI) | compare |
| b2264 | menD | +0.2 | 1.7 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b1698 | ydiR | +0.2 | 1.4 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b2284 | nuoF | +0.2 | 1.4 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b3698 | yidB | +0.2 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1339 | abgR | +0.2 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1733 | chbG | +0.2 | 0.9 | hypothetical protein (NCBI) | compare |
| b0909 | ycaL | +0.2 | 1.2 | putative heat shock protein (VIMSS) | compare |
| b1575 | dicB | +0.2 | 0.6 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1349 | recT | +0.2 | 1.4 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b2209 | eco | +0.2 | 0.5 | ecotin precursor (NCBI) | compare |