Experiment set42IT034 for Pseudomonas putida KT2440

Compare to:

P. put PUT 10 MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_3627 -6.7 -6.5 conserved protein of unknown function compare
PP_1355 -5.5 -7.6 Muropeptide permease AmpG compare
PP_4720 -5.3 -3.2 putative RNA binding protein compare
PP_4936 -5.0 -8.3 O-antigen polymerase compare
PP_1800 -5.0 -9.0 Oxidoreductase Rmd compare
PP_4938 -4.9 -10.5 putative Glycosyl transferase compare
PP_1776 -4.9 -12.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0789 -4.9 -5.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5114 -4.9 -4.7 putative adenine methyltransferase compare
PP_1770 -4.8 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4874 -4.8 -3.3 50S ribosomal protein L9 compare
PP_0406 -4.6 -3.2 Nucleotidyltransferase family protein compare
PP_1777 -4.5 -13.1 phosphomannomutase compare
PP_1805 -4.5 -15.7 Polysaccharide biosynthesis protein compare
PP_5279 -4.4 -4.3 conserved protein of unknown function compare
PP_2145 -4.4 -3.0 beta-N-acetylglucosaminidase compare
PP_1871 -4.4 -7.3 Protease HtpX compare
PP_2148 -4.3 -12.3 transcription-repair coupling factor compare
PP_0405 -4.3 -11.3 conserved protein of unknown function compare
PP_1627 -4.2 -9.8 conserved protein of unknown function compare
PP_1802 -4.2 -16.8 glycosyl transferase compare
PP_4726 -4.2 -2.9 Chaperone protein DnaJ compare
PP_1799 -4.2 -11.1 GDP-mannose 4,6-dehydratase compare
PP_1774 -4.1 -3.7 conserved exported protein of unknown function compare
PP_1779 -4.1 -4.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1803 -4.0 -11.9 UDP-sugar epimerase compare
PP_1780 -3.9 -16.9 putative mannosyltransferase compare
PP_1801 -3.9 -10.8 Glycosyl transferase WbpY compare
PP_1650 -3.8 -27.6 Sensor protein GacS compare
PP_1204 -3.8 -5.8 putative Lipoprotein compare
PP_4099 -3.8 -23.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1804 -3.7 -9.7 Glycosyl transferase WbpL compare
PP_0066 -3.6 -6.9 Ribosomal RNA small subunit methyltransferase B compare
PP_0434 -3.6 -5.4 Anhydro-N-acetylmuramic acid kinase compare
PP_0540 -3.6 -7.6 conserved inner membrane protein compare
PP_1764 -3.6 -2.5 Phosphoglycolate phosphatase 2 compare
PP_0435 -3.6 -5.5 Peptidase, M23/M37 family compare
PP_4902 -3.5 -3.4 Oligoribonuclease compare
PP_4517 -3.4 -3.5 conserved protein of unknown function compare
PP_0725 -3.2 -5.8 conserved hypothetical TPR repeat protein compare
PP_2027 -3.2 -6.5 conserved exported protein of unknown function compare
PP_5058 -3.2 -6.1 Carboxy-terminal-processing protease compare
PP_2163 -3.2 -7.5 VacJ lipoprotein compare
PP_1778 -3.1 -5.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1702 -3.1 -4.2 Recombination-associated protein RdgC compare
PP_1215 -3.1 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1428 -3.1 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_4944 -3.0 -3.6 Carbamoyltransferase compare
PP_1655 -2.9 -7.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2299 -2.8 -4.0 Trigger factor compare
PP_0834 -2.8 -2.8 Sec translocation complex subunit YajC compare
PP_1075 -2.8 -9.0 glycerol kinase compare
PP_2032 -2.8 -6.0 putative ATPase compare
PP_1663 -2.6 -6.2 conserved exported protein of unknown function compare
PP_4515 -2.6 -5.1 Transcriptional regulator, MarR family compare
PP_1036 -2.5 -8.2 membrane-bound lytic murein transglycosylase F compare
PP_2028 -2.5 -4.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5145 -2.5 -16.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5217 -2.5 -11.3 Polyphosphate kinase compare
PP_2031 -2.5 -2.2 conserved protein of unknown function compare
PP_5283 -2.5 -4.7 periplasmic dipeptide transport protein compare
PP_4171 -2.4 -13.3 conserved exported protein of unknown function compare
PP_2030 -2.4 -4.3 conserved protein of unknown function compare
PP_1076 -2.4 -5.3 aquaglyceroporin compare
PP_0962 -2.3 -2.6 toluene-tolerance protein compare
PP_4895 -2.3 -1.6 tRNA dimethylallyltransferase compare
PP_0809 -2.2 -7.2 disulfide bond formation protein B compare
PP_5017 -2.2 -1.9 Sec-independent protein translocase protein TatB compare
PP_0948 -2.2 -2.1 Phosphocarrier protein HPr compare
PP_2414 -2.2 -2.4 conserved exported protein of unknown function compare
PP_1790 -2.1 -2.5 putative Acylneuraminate cytidylyltransferase compare
PP_1798 -2.1 -8.4 Outer membrane efflux protein compare
PP_0127 -2.1 -3.5 Thiol:disulfide interchange protein compare
PP_4199 -2.0 -1.5 putative Lipoprotein compare
PP_4217 -2.0 -13.3 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0719 -2.0 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1214 -1.9 -2.5 putative transcriptional regulatory protein compare
PP_0937 -1.9 -5.1 endoribonuclease G (RNAse G) compare
PP_0164 -1.9 -4.5 conserved protein of unknown function compare
PP_1523 -1.8 -3.7 conserved protein of unknown function compare
PP_4264 -1.8 -7.0 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0961 -1.8 -6.0 toluene tolerance protein compare
PP_2402 -1.8 -2.1 putative Sensor histidine kinase compare
PP_2403 -1.8 -1.7 Chemotaxis protein CheY compare
PP_0770 -1.8 -4.5 PemI-like protein compare
PP_0035 -1.7 -2.5 putative bactoprenol-linked glycose transferase compare
PP_5146 -1.7 -4.6 RNA pyrophosphohydrolase compare
PP_1918 -1.7 -7.1 septation protein compare
PP_5519 -1.7 -2.8 conserved protein of unknown function of phage origin compare
PP_4471 -1.6 -3.6 Magnesium transporter compare
PP_4529 -1.6 -2.2 conserved protein of unknown function compare
PP_5439 -1.6 -4.1 conserved protein of unknown function compare
PP_0960 -1.6 -2.8 phospholipid ABC transporter binding protein compare
PP_1326 -1.6 -1.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_4892 -1.5 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5101 -1.5 -4.3 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_3034 -1.5 -3.0 putative Regulator protein compare
PP_4198 -1.5 -4.2 OmpA family protein compare
PP_0630 -1.4 -1.3 DNA gyrase inhibitor YacG compare
PP_4805 -1.4 -6.2 membrane-bound lytic murein transglycosylase B compare
PP_4159 -1.4 -2.1 Potassium-transporting ATPase C chain compare
PP_0958 -1.4 -4.0 phospholipid ABC transporter ATP-binding subunit compare
PP_4997 -1.4 -2.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1775 -1.4 -2.1 Metallo-beta-lactamase family protein compare
PP_3411 -1.4 -1.4 conserved protein of unknown function compare
PP_0959 -1.4 -1.7 phospholipid ABC transporter compare
PP_1654 -1.3 -1.2 cysteine synthase B compare
PP_1632 -1.3 -1.6 conserved protein of unknown function compare
PP_1797 -1.3 -4.0 HlyD family secretion protein compare
PP_5284 -1.2 -3.7 UPF0758 protein PP_5284 compare
PP_4980 -1.2 -2.9 ATP-dependent RNA helicase compare
PP_5652 -1.2 -1.2 conserved protein of unknown function, phage origin compare
PP_3328 -1.2 -1.6 putative Ring-cleaving dioxygenase compare
PP_1909 -1.2 -2.9 putative septum formation protein compare
PP_0293 -1.2 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0794 -1.2 -2.5 1-phosphofructokinase monomer compare
PP_4793 -1.2 -2.4 conserved protein of unknown function compare
PP_1824 -1.2 -1.8 Smr domain protein compare
PP_1626 -1.2 -4.4 DNA mismatch repair protein MutS compare
PP_0941 -1.2 -3.4 putative ribosome associated protein compare
PP_2976 -1.2 -1.0 putative transposase compare
PP_1789 -1.1 -2.3 Hydrolase, haloacid dehalogenase-like family compare
PP_5329 -1.1 -2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4964 -1.1 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1807 -1.1 -6.0 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_2371 -1.1 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3749 -1.1 -4.3 conserved protein of unknown function compare
PP_4875 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_5278 -1.1 -3.6 4-guanidinobutyraldehyde dehydrogenase compare
PP_0022 -1.1 -1.1 hypothetical protein compare
PP_3522 -1.1 -2.0 conserved protein of unknown function compare
PP_0787 -1.1 -2.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1986 -1.1 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_1216 -1.1 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4798 -1.1 -4.0 putative Membrane-bound lytic murein transglycosylase compare
PP_4971 -1.1 -5.2 putative Outer membrane-bound lytic murein transglycolase A compare
PP_3346 -1.1 -2.5 Nickel transporter ATP-binding protein compare
PP_1629 -1.0 -3.7 Protein RecA compare
PP_5113 -1.0 -2.9 predicted Zn-dependent peptidases compare
PP_0607 -1.0 -1.2 putative Type IV pili biogenesis protein FimT compare
PP_0393 -1.0 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2824 -1.0 -3.6 Transcriptional regulator, TetR family compare
PP_4495 -1.0 -6.3 aromatic amino acid transport protein compare
PP_3121 -1.0 -1.6 transcriptional regulator, LysR family compare
PP_3164 -1.0 -1.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2416 -1.0 -2.5 putative Iron ABC transporter, ATP-binding protein compare
PP_0401 -1.0 -2.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1656 -1.0 -3.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_0949 -1.0 -4.0 putative ATP-binding protein UPF0042 compare
PP_1415 -1.0 -2.0 putative membrane associated enzyme subunit compare
PP_3770 -1.0 -2.4 conserved protein of unknown function compare
PP_2005 -1.0 -3.7 conserved exported protein of unknown function compare
PP_1513 -1.0 -1.9 Ribosomal RNA small subunit methyltransferase J compare
PP_4008 -1.0 -3.0 ATP-dependent serine protease compare
PP_5546 -1.0 -0.9 conserved protein of unknown function compare
PP_1062 -0.9 -2.0 MutT/nudix family protein compare
PP_4069 -0.9 -1.2 conserved protein of unknown function compare
PP_4340 -0.9 -2.3 response regulator for chemotactic signal transduction compare
PP_1269 -0.9 -1.0 Universal stress protein family compare
PP_5324 -0.9 -1.7 Response regulator compare
PP_2029 -0.9 -1.1 von Willebrand factor type A domain protein compare
PP_5475 -0.9 -1.2 conserved protein of unknown function compare
PP_1068 -0.9 -2.1 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_5571 -0.9 -1.2 conserved protein of unknown function compare
PP_2903 -0.9 -0.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1697 -0.9 -2.3 transcriptional regulator, GntR family compare
PP_1455 -0.9 -2.9 conserved protein of unknown function compare
PP_5473 -0.9 -1.2 putative transcriptional regulator, LuxR family compare
PP_2575 -0.9 -1.6 conserved exported protein of unknown function compare
PP_2098 -0.9 -5.2 D-alanyl-D-alanine carboxypeptidase compare
PP_0007 -0.9 -1.7 conserved hypothetical protein compare
PP_0549 -0.9 -3.3 putative Lipoprotein compare
PP_4804 -0.8 -1.4 RlpA-like lipoprotein compare
PP_1524 -0.8 -2.8 23S rRNA m1G745 methyltransferase compare
PP_3333 -0.8 -2.8 conserved protein of unknown function compare
PP_5241 -0.8 -2.1 DNA-binding response regulator, LuxR family compare
PP_5702 -0.8 -1.6 conserved protein of unknown function compare
PP_5053 -0.8 -3.9 Protein-export protein SecB compare
PP_4172 -0.8 -3.5 conserved exported protein of unknown function compare
PP_4891 -0.8 -2.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1493 -0.8 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1598 -0.8 -1.4 regulatory intramembrane protein RIP zinc protease compare
PP_3769 -0.8 -2.8 conserved exported protein of unknown function compare
PP_2921 -0.8 -3.0 conserved protein of unknown function compare
PP_0914 -0.8 -4.2 GGDEF domain protein compare
PP_3614 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_2796 -0.8 -2.7 conserved protein of unknown function compare
PP_4006 -0.8 -3.5 Putative arginyl-tRNA--protein transferase compare
PP_t57 -0.8 -1.7 tRNA-Arg compare
PP_0218 -0.8 -3.1 Sensory box protein compare
PP_1512 -0.8 -1.4 conserved protein of unknown function compare
PP_1713 -0.8 -1.5 Transcriptional regulator PcaQ compare
PP_0691 -0.8 -0.9 Glutamate 5-kinase compare
PP_5191 -0.8 -2.3 conserved exported protein of unknown function compare
PP_1268 -0.8 -1.3 putative HtrA suppressor protein sohA compare
PP_0564 -0.8 -3.0 conserved protein of unknown function compare
PP_5227 -0.8 -3.4 diaminopimelate decarboxylase compare
PP_5317 -0.7 -1.0 Probable chorismate pyruvate-lyase compare
PP_5453 -0.7 -1.2 conserved protein of unknown function compare


Specific Phenotypes

For 14 genes in this experiment