Experiment set42IT033 for Pseudomonas putida KT2440

Compare to:

P. put PUT 10 MOI 1

200 most important genes:

  gene name fitness t score description  
PP_1774 -7.2 -4.2 conserved exported protein of unknown function compare
PP_3627 -6.8 -7.9 conserved protein of unknown function compare
PP_1355 -6.6 -6.5 Muropeptide permease AmpG compare
PP_0540 -6.4 -8.8 conserved inner membrane protein compare
PP_4099 -6.4 -40.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -6.2 -35.0 Sensor protein GacS compare
PP_0405 -6.0 -10.0 conserved protein of unknown function compare
PP_0789 -5.7 -7.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1800 -5.6 -10.7 Oxidoreductase Rmd compare
PP_4874 -5.5 -3.7 50S ribosomal protein L9 compare
PP_0434 -5.5 -7.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1627 -5.5 -13.5 conserved protein of unknown function compare
PP_1803 -5.4 -12.6 UDP-sugar epimerase compare
PP_4936 -5.4 -11.5 O-antigen polymerase compare
PP_1776 -5.3 -16.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1799 -5.2 -13.4 GDP-mannose 4,6-dehydratase compare
PP_2145 -5.1 -3.5 beta-N-acetylglucosaminidase compare
PP_1780 -5.1 -18.2 putative mannosyltransferase compare
PP_1805 -5.0 -20.8 Polysaccharide biosynthesis protein compare
PP_2148 -5.0 -15.3 transcription-repair coupling factor compare
PP_1777 -5.0 -18.5 phosphomannomutase compare
PP_4726 -4.9 -3.4 Chaperone protein DnaJ compare
PP_0406 -4.9 -4.7 Nucleotidyltransferase family protein compare
PP_4938 -4.8 -12.1 putative Glycosyl transferase compare
PP_0435 -4.8 -3.3 Peptidase, M23/M37 family compare
PP_5114 -4.8 -4.5 putative adenine methyltransferase compare
PP_1778 -4.8 -3.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1802 -4.7 -18.2 glycosyl transferase compare
PP_1801 -4.7 -12.9 Glycosyl transferase WbpY compare
PP_1779 -4.7 -5.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1804 -4.5 -11.1 Glycosyl transferase WbpL compare
PP_1663 -4.1 -10.0 conserved exported protein of unknown function compare
PP_5279 -4.0 -6.6 conserved protein of unknown function compare
PP_0066 -4.0 -8.9 Ribosomal RNA small subunit methyltransferase B compare
PP_1655 -3.8 -14.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1764 -3.6 -4.2 Phosphoglycolate phosphatase 2 compare
PP_0725 -3.6 -8.3 conserved hypothetical TPR repeat protein compare
PP_1702 -3.4 -5.5 Recombination-associated protein RdgC compare
PP_1871 -3.2 -6.8 Protease HtpX compare
PP_5283 -3.2 -6.4 periplasmic dipeptide transport protein compare
PP_1036 -3.0 -11.4 membrane-bound lytic murein transglycosylase F compare
PP_1075 -3.0 -10.6 glycerol kinase compare
PP_0959 -2.9 -3.6 phospholipid ABC transporter compare
PP_5058 -2.9 -7.4 Carboxy-terminal-processing protease compare
PP_4171 -2.9 -13.2 conserved exported protein of unknown function compare
PP_5145 -2.9 -19.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0127 -2.8 -4.1 Thiol:disulfide interchange protein compare
PP_4720 -2.8 -2.9 putative RNA binding protein compare
PP_1204 -2.6 -6.2 putative Lipoprotein compare
PP_2027 -2.6 -8.0 conserved exported protein of unknown function compare
PP_0948 -2.6 -2.5 Phosphocarrier protein HPr compare
PP_0937 -2.5 -6.7 endoribonuclease G (RNAse G) compare
PP_1326 -2.5 -2.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0719 -2.5 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4217 -2.5 -19.3 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2029 -2.5 -2.3 von Willebrand factor type A domain protein compare
PP_2032 -2.4 -5.4 putative ATPase compare
PP_5217 -2.4 -13.5 Polyphosphate kinase compare
PP_4895 -2.3 -2.7 tRNA dimethylallyltransferase compare
PP_2031 -2.3 -2.4 conserved protein of unknown function compare
PP_1798 -2.2 -9.9 Outer membrane efflux protein compare
PP_5146 -2.2 -6.3 RNA pyrophosphohydrolase compare
PP_4199 -2.2 -1.6 putative Lipoprotein compare
PP_4964 -2.1 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1770 -2.1 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0958 -2.0 -6.1 phospholipid ABC transporter ATP-binding subunit compare
PP_1523 -2.0 -3.1 conserved protein of unknown function compare
PP_4517 -2.0 -3.4 conserved protein of unknown function compare
PP_1076 -1.9 -6.1 aquaglyceroporin compare
PP_0794 -1.9 -6.1 1-phosphofructokinase monomer compare
PP_4198 -1.8 -5.7 OmpA family protein compare
PP_0809 -1.8 -6.4 disulfide bond formation protein B compare
PP_0960 -1.7 -4.5 phospholipid ABC transporter binding protein compare
PP_0872 -1.7 -6.2 Peptide chain release factor 3 compare
PP_1789 -1.7 -5.1 Hydrolase, haloacid dehalogenase-like family compare
PP_2028 -1.7 -3.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2163 -1.7 -5.4 VacJ lipoprotein compare
PP_0164 -1.7 -3.9 conserved protein of unknown function compare
PP_0787 -1.7 -3.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2402 -1.7 -2.3 putative Sensor histidine kinase compare
PP_2414 -1.6 -2.7 conserved exported protein of unknown function compare
PP_1654 -1.5 -2.0 cysteine synthase B compare
PP_5439 -1.5 -6.1 conserved protein of unknown function compare
PP_0961 -1.5 -6.4 toluene tolerance protein compare
PP_1807 -1.5 -7.4 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_4515 -1.5 -5.5 Transcriptional regulator, MarR family compare
PP_1626 -1.5 -5.6 DNA mismatch repair protein MutS compare
PP_5101 -1.4 -7.1 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_2030 -1.4 -4.5 conserved protein of unknown function compare
PP_1632 -1.4 -1.3 conserved protein of unknown function compare
PP_1656 -1.4 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1909 -1.4 -2.8 putative septum formation protein compare
PP_3505 -1.4 -1.6 conserved protein of unknown function compare
PP_1918 -1.3 -7.8 septation protein compare
PP_3105 -1.3 -2.5 conserved membrane protein of unknown function compare
PP_4495 -1.3 -8.5 aromatic amino acid transport protein compare
PP_5100 -1.2 -2.3 dITP/XTP pyrophosphatase compare
PP_3768 -1.2 -5.4 putative shikimate 5-dehydrogenase compare
PP_1783 -1.2 -1.6 dTDP-glucose pyrophosphorylase compare
PP_t49 -1.2 -3.2 tRNA-Met compare
PP_1790 -1.2 -3.2 putative Acylneuraminate cytidylyltransferase compare
PP_2005 -1.2 -6.7 conserved exported protein of unknown function compare
PP_4805 -1.2 -7.1 membrane-bound lytic murein transglycosylase B compare
PP_5284 -1.2 -3.7 UPF0758 protein PP_5284 compare
PP_4798 -1.2 -5.2 putative Membrane-bound lytic murein transglycosylase compare
PP_4766 -1.1 -7.4 ATP-dependent RNA helicase compare
PP_4054 -1.1 -2.4 conserved protein of unknown function compare
PP_2299 -1.1 -1.7 Trigger factor compare
PP_1775 -1.1 -1.5 Metallo-beta-lactamase family protein compare
PP_1074 -1.1 -3.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1797 -1.1 -4.9 HlyD family secretion protein compare
PP_4902 -1.1 -2.0 Oligoribonuclease compare
PP_5045 -1.1 -4.4 tRNA sulfurtransferase compare
PP_2903 -1.1 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5053 -1.1 -3.6 Protein-export protein SecB compare
PP_1440 -1.1 -5.6 tRNA (mo5U34)-methyltransferase compare
PP_4471 -1.1 -2.5 Magnesium transporter compare
PP_5039 -1.1 -3.2 conserved protein of unknown function compare
PP_2060 -1.0 -2.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0941 -1.0 -2.7 putative ribosome associated protein compare
PP_1629 -1.0 -3.7 Protein RecA compare
PP_5706 -1.0 -1.9 Sec translocation complex - SecG subunit compare
PP_5278 -1.0 -3.1 4-guanidinobutyraldehyde dehydrogenase compare
PP_3769 -1.0 -3.4 conserved exported protein of unknown function compare
PP_4338 -1.0 -5.2 Chemotaxis histidine kinase CheA compare
PP_0685 -1.0 -1.1 conserved protein of unknown function compare
PP_4971 -1.0 -6.5 putative Outer membrane-bound lytic murein transglycolase A compare
PP_4697 -1.0 -3.7 poly(A) polymerase compare
PP_4005 -1.0 -2.9 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_5504 -1.0 -3.6 conserved protein of unknown function compare
PP_5227 -0.9 -4.2 diaminopimelate decarboxylase compare
PP_0949 -0.9 -3.4 putative ATP-binding protein UPF0042 compare
PP_0962 -0.9 -2.5 toluene-tolerance protein compare
PP_1217 -0.9 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4006 -0.9 -3.7 Putative arginyl-tRNA--protein transferase compare
PP_2098 -0.9 -5.4 D-alanyl-D-alanine carboxypeptidase compare
PP_4980 -0.9 -3.3 ATP-dependent RNA helicase compare
PP_1309 -0.9 -5.2 conserved exported protein of unknown function compare
PP_4891 -0.9 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2118 -0.9 -2.1 conserved protein of unknown function compare
PP_5113 -0.9 -2.7 predicted Zn-dependent peptidases compare
PP_1214 -0.9 -1.7 putative transcriptional regulatory protein compare
PP_5008 -0.9 -1.2 Poly granule-associated protein compare
PP_4084 -0.9 -1.6 conserved protein of unknown function compare
PP_1110 -0.8 -2.0 serine acetyltransferase compare
PP_3398 -0.8 -1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2096 -0.8 -4.7 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_1987 -0.8 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_4944 -0.8 -1.1 Carbamoyltransferase compare
PP_4875 -0.8 -1.1 conserved membrane protein of unknown function compare
PP_4490 -0.8 -3.9 phenylalanine-4-hydroxylase compare
PP_1237 -0.8 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3307 -0.8 -1.3 conserved protein of unknown function compare
PP_t57 -0.8 -2.0 tRNA-Arg compare
PP_4705 -0.8 -2.7 Glyoxalase compare
PP_4489 -0.8 -4.7 sigma-54 dependent transcriptional regulator compare
PP_2718 -0.7 -2.1 arsenic resistance transcriptional regulator compare
PP_4707 -0.7 -2.4 OsmY-related protein compare
PP_2348 -0.7 -2.5 Sensor histidine kinase compare
PP_4143 -0.7 -2.2 conserved protein of unknown function compare
PP_4018 -0.7 -1.8 Acetyltransferase, GNAT family compare
PP_4529 -0.7 -0.9 conserved protein of unknown function compare
PP_2497 -0.7 -1.0 conserved protein of unknown function compare
PP_5329 -0.7 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4792 -0.7 -1.8 conserved exported protein of unknown function compare
PP_4570 -0.7 -4.9 conserved protein of unknown function compare
PP_1279 -0.7 -2.7 Probable alginate O-acetylase AlgJ compare
PP_3110 -0.7 -1.5 protein of unknown function compare
PP_5571 -0.7 -1.1 conserved protein of unknown function compare
PP_0839 -0.7 -2.7 tRNA Cm32/Um32 methyltransferase compare
PP_0042 -0.7 -2.2 conserved exported protein of unknown function compare
PP_0401 -0.7 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_4470 -0.7 -1.3 putative transcriptional regulator (Arc domain-containing) compare
PP_5095 -0.7 -0.9 pyrroline-5-carboxylate reductase compare
PP_4159 -0.7 -1.1 Potassium-transporting ATPase C chain compare
PP_2720 -0.7 -1.1 conserved protein of unknown function compare
PP_4009 -0.7 -2.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_2087 -0.7 -1.2 CmpX protein compare
PP_4804 -0.7 -1.6 RlpA-like lipoprotein compare
PP_3576 -0.7 -2.3 putative Transmembrane sensor compare
PP_1455 -0.7 -1.5 conserved protein of unknown function compare
PP_3449 -0.7 -1.9 conserved exported protein of unknown function compare
PP_5423 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_0855 -0.7 -1.9 conserved protein of unknown function compare
PP_1691 -0.7 -2.6 conserved protein of unknown function compare
PP_3460 -0.7 -1.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_0287 -0.7 -3.1 conserved exported protein of unknown function compare
PP_4392 -0.7 -3.4 chemotaxis protein methyltransferase compare
PP_1198 -0.7 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5086 -0.7 -3.0 putative nuclease (SNase domain protein) compare
PP_0400 -0.7 -3.6 CO2+/MG2+ efflux protein compare
PP_1281 -0.7 -3.7 Alginate lyase compare
PP_1635 -0.7 -1.8 DNA-binding response regulator compare
PP_5491 -0.6 -1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_0928 -0.6 -4.0 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_4897 -0.6 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_0914 -0.6 -3.7 GGDEF domain protein compare
PP_5317 -0.6 -1.4 Probable chorismate pyruvate-lyase compare
PP_1232 -0.6 -2.3 conserved exported protein of unknown function compare
PP_1269 -0.6 -0.8 Universal stress protein family compare


Specific Phenotypes

For 23 genes in this experiment