Experiment set42IT032 for Pseudomonas putida KT2440

Compare to:

P. put PUT 10 MOI 1

200 most important genes:

  gene name fitness t score description  
PP_4720 -7.7 -5.3 putative RNA binding protein compare
PP_0789 -7.0 -4.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1774 -6.9 -4.7 conserved exported protein of unknown function compare
PP_5114 -6.6 -4.5 putative adenine methyltransferase compare
PP_4099 -6.1 -38.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0540 -6.1 -8.4 conserved inner membrane protein compare
PP_1650 -6.0 -32.7 Sensor protein GacS compare
PP_4936 -6.0 -7.1 O-antigen polymerase compare
PP_1355 -5.7 -10.3 Muropeptide permease AmpG compare
PP_1800 -5.5 -8.5 Oxidoreductase Rmd compare
PP_1801 -5.5 -8.4 Glycosyl transferase WbpY compare
PP_1776 -5.5 -12.2 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0405 -5.4 -10.4 conserved protein of unknown function compare
PP_3627 -5.3 -7.1 conserved protein of unknown function compare
PP_0434 -5.3 -7.3 Anhydro-N-acetylmuramic acid kinase compare
PP_4874 -5.2 -3.6 50S ribosomal protein L9 compare
PP_0066 -5.1 -11.3 Ribosomal RNA small subunit methyltransferase B compare
PP_1627 -5.1 -11.9 conserved protein of unknown function compare
PP_0406 -5.1 -3.5 Nucleotidyltransferase family protein compare
PP_1803 -5.0 -11.2 UDP-sugar epimerase compare
PP_1805 -5.0 -17.3 Polysaccharide biosynthesis protein compare
PP_1777 -4.8 -15.4 phosphomannomutase compare
PP_1780 -4.8 -16.2 putative mannosyltransferase compare
PP_1799 -4.7 -12.2 GDP-mannose 4,6-dehydratase compare
PP_4726 -4.6 -3.1 Chaperone protein DnaJ compare
PP_2148 -4.5 -14.3 transcription-repair coupling factor compare
PP_1663 -4.5 -10.6 conserved exported protein of unknown function compare
PP_1804 -4.3 -10.8 Glycosyl transferase WbpL compare
PP_1802 -4.3 -17.6 glycosyl transferase compare
PP_1778 -4.3 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1655 -4.3 -11.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4938 -4.2 -11.4 putative Glycosyl transferase compare
PP_1702 -4.1 -4.0 Recombination-associated protein RdgC compare
PP_1764 -4.0 -2.7 Phosphoglycolate phosphatase 2 compare
PP_1779 -3.9 -6.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2145 -3.9 -4.6 beta-N-acetylglucosaminidase compare
PP_0435 -3.8 -7.2 Peptidase, M23/M37 family compare
PP_2903 -3.6 -2.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5058 -3.6 -6.5 Carboxy-terminal-processing protease compare
PP_0959 -3.3 -2.6 phospholipid ABC transporter compare
PP_1326 -3.1 -5.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1871 -3.0 -6.9 Protease HtpX compare
PP_0958 -3.0 -8.0 phospholipid ABC transporter ATP-binding subunit compare
PP_1036 -3.0 -10.1 membrane-bound lytic murein transglycosylase F compare
PP_5217 -2.8 -14.6 Polyphosphate kinase compare
PP_1075 -2.8 -11.8 glycerol kinase compare
PP_5283 -2.8 -6.2 periplasmic dipeptide transport protein compare
PP_5145 -2.7 -17.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4171 -2.7 -12.3 conserved exported protein of unknown function compare
PP_1798 -2.7 -10.8 Outer membrane efflux protein compare
PP_1204 -2.7 -5.0 putative Lipoprotein compare
PP_0725 -2.7 -5.9 conserved hypothetical TPR repeat protein compare
PP_0937 -2.7 -6.8 endoribonuclease G (RNAse G) compare
PP_2030 -2.6 -5.1 conserved protein of unknown function compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_1076 -2.6 -7.4 aquaglyceroporin compare
PP_1428 -2.5 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_0948 -2.5 -2.5 Phosphocarrier protein HPr compare
PP_1770 -2.5 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1790 -2.4 -3.2 putative Acylneuraminate cytidylyltransferase compare
PP_5279 -2.3 -4.3 conserved protein of unknown function compare
PP_1186 -2.3 -2.6 two component system DNA-binding transcriptional dual regulator compare
PP_4217 -2.3 -18.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0719 -2.3 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5146 -2.3 -6.5 RNA pyrophosphohydrolase compare
PP_1215 -2.3 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_4944 -2.2 -3.1 Carbamoyltransferase compare
PP_2032 -2.1 -5.5 putative ATPase compare
PP_2027 -2.1 -5.2 conserved exported protein of unknown function compare
PP_2029 -2.1 -3.0 von Willebrand factor type A domain protein compare
PP_4517 -2.0 -3.7 conserved protein of unknown function compare
PP_t49 -2.0 -4.9 tRNA-Met compare
PP_0809 -2.0 -6.8 disulfide bond formation protein B compare
PP_0962 -1.9 -4.4 toluene-tolerance protein compare
PP_4892 -1.9 -6.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4515 -1.8 -6.1 Transcriptional regulator, MarR family compare
PP_0787 -1.8 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2031 -1.8 -2.5 conserved protein of unknown function compare
PP_2402 -1.8 -2.4 putative Sensor histidine kinase compare
PP_4342 -1.8 -3.8 flagellar synthesis regulator, putative ATPase compare
PP_2028 -1.8 -3.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0961 -1.8 -7.7 toluene tolerance protein compare
PP_4471 -1.7 -3.9 Magnesium transporter compare
PP_4891 -1.7 -5.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0960 -1.7 -4.8 phospholipid ABC transporter binding protein compare
PP_5445 -1.7 -2.3 conserved protein of unknown function compare
PP_1918 -1.7 -10.2 septation protein compare
PP_5439 -1.6 -5.3 conserved protein of unknown function compare
PP_5100 -1.6 -4.5 dITP/XTP pyrophosphatase compare
PP_1523 -1.6 -4.3 conserved protein of unknown function compare
PP_5095 -1.6 -1.8 pyrroline-5-carboxylate reductase compare
PP_1789 -1.6 -5.1 Hydrolase, haloacid dehalogenase-like family compare
PP_0794 -1.5 -3.7 1-phosphofructokinase monomer compare
PP_2163 -1.5 -5.6 VacJ lipoprotein compare
PP_1656 -1.5 -4.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_0566 -1.5 -1.7 translation-related factor compare
PP_4198 -1.5 -5.8 OmpA family protein compare
PP_1626 -1.4 -5.8 DNA mismatch repair protein MutS compare
PP_2442 -1.4 -2.1 conserved protein of unknown function, DUF480 family compare
PP_4199 -1.4 -1.4 putative Lipoprotein compare
PP_4902 -1.4 -2.5 Oligoribonuclease compare
PP_1268 -1.4 -3.1 putative HtrA suppressor protein sohA compare
PP_3098 -1.4 -1.4 conserved protein of unknown function compare
PP_5101 -1.4 -7.4 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_0164 -1.4 -3.5 conserved protein of unknown function compare
PP_0855 -1.3 -2.4 conserved protein of unknown function compare
PP_4247 -1.3 -2.4 Exonuclease compare
PP_1807 -1.3 -7.0 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_2299 -1.3 -1.9 Trigger factor compare
PP_4805 -1.3 -6.0 membrane-bound lytic murein transglycosylase B compare
PP_1654 -1.2 -1.2 cysteine synthase B compare
PP_4971 -1.2 -7.0 putative Outer membrane-bound lytic murein transglycolase A compare
PP_4964 -1.2 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1909 -1.2 -2.3 putative septum formation protein compare
PP_1214 -1.1 -1.9 putative transcriptional regulatory protein compare
PP_5053 -1.1 -4.6 Protein-export protein SecB compare
PP_0941 -1.1 -4.8 putative ribosome associated protein compare
PP_2720 -1.1 -1.6 conserved protein of unknown function compare
PP_4004 -1.1 -2.5 DNA translocase FtsK compare
PP_1783 -1.1 -1.3 dTDP-glucose pyrophosphorylase compare
PP_5572 -1.1 -2.4 protein of unknown function compare
PP_4952 -1.1 -2.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4798 -1.1 -4.7 putative Membrane-bound lytic murein transglycosylase compare
PP_2005 -1.1 -4.5 conserved exported protein of unknown function compare
PP_0949 -1.1 -3.6 putative ATP-binding protein UPF0042 compare
PP_1309 -1.1 -3.8 conserved exported protein of unknown function compare
PP_1797 -1.1 -4.4 HlyD family secretion protein compare
PP_4495 -1.1 -7.6 aromatic amino acid transport protein compare
PP_0007 -1.1 -2.9 conserved hypothetical protein compare
PP_4008 -1.1 -3.1 ATP-dependent serine protease compare
PP_0042 -1.0 -3.3 conserved exported protein of unknown function compare
PP_5113 -1.0 -2.7 predicted Zn-dependent peptidases compare
PP_1775 -1.0 -1.4 Metallo-beta-lactamase family protein compare
PP_0750 -1.0 -3.7 conserved protein of unknown function compare
PP_2340 -1.0 -2.8 conserved protein of unknown function compare
PP_1216 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2499 -1.0 -1.8 conserved protein of unknown function compare
PP_2999 -1.0 -1.5 Glyoxalase family protein compare
PP_2414 -1.0 -1.1 conserved exported protein of unknown function compare
PP_5706 -1.0 -2.0 Sec translocation complex - SecG subunit compare
PP_2098 -1.0 -5.5 D-alanyl-D-alanine carboxypeptidase compare
PP_4766 -1.0 -4.1 ATP-dependent RNA helicase compare
PP_0218 -1.0 -5.2 Sensory box protein compare
PP_1898 -1.0 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PP_0025 -1.0 -1.7 hypothetical protein compare
PP_5278 -0.9 -2.9 4-guanidinobutyraldehyde dehydrogenase compare
PP_5227 -0.9 -4.8 diaminopimelate decarboxylase compare
PP_1632 -0.9 -1.3 conserved protein of unknown function compare
PP_0834 -0.9 -2.0 Sec translocation complex subunit YajC compare
PP_2794 -0.9 -1.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4980 -0.9 -3.5 ATP-dependent RNA helicase compare
PP_4009 -0.9 -1.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_4570 -0.9 -6.8 conserved protein of unknown function compare
PP_5284 -0.9 -2.6 UPF0758 protein PP_5284 compare
PP_4879 -0.9 -3.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1556 -0.9 -2.6 conserved protein of unknown function compare
PP_2096 -0.9 -5.7 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_1493 -0.9 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0261 -0.9 -3.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0914 -0.9 -4.5 GGDEF domain protein compare
PP_0872 -0.8 -2.7 Peptide chain release factor 3 compare
PP_0305 -0.8 -4.1 HTH-type transcriptional regulator CdhR compare
PP_2820 -0.8 -2.1 HTH-type transcriptional regulator nfxB compare
PP_1217 -0.8 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3411 -0.8 -1.6 conserved protein of unknown function compare
PP_4006 -0.8 -3.3 Putative arginyl-tRNA--protein transferase compare
PP_3769 -0.8 -2.6 conserved exported protein of unknown function compare
PP_1730 -0.8 -3.6 Probable M18 family aminopeptidase 2 compare
PP_3768 -0.8 -3.0 putative shikimate 5-dehydrogenase compare
PP_4845 -0.8 -3.8 putative Urea ABC transporter, ATP-binding protein compare
PP_1110 -0.8 -1.8 serine acetyltransferase compare
PP_4172 -0.8 -3.1 conserved exported protein of unknown function compare
PP_0886 -0.8 -2.3 conserved exported protein of unknown function compare
PP_1237 -0.8 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0117 -0.8 -3.7 Zn(2+) ABC transporter - permease subunit compare
PP_1629 -0.8 -2.6 Protein RecA compare
PP_2231 -0.8 -2.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5329 -0.8 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5055 -0.8 -3.3 Sulfurtransferase compare
PP_4835 -0.8 -1.9 conserved exported protein of unknown function compare
PP_0293 -0.8 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2348 -0.8 -2.7 Sensor histidine kinase compare
PP_1066 -0.8 -1.5 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1045 -0.8 -1.2 Type II secretion pathway protein XcpP compare
PP_4497 -0.8 -2.8 conserved protein of unknown function compare
PP_5270 -0.7 -3.5 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_2304 -0.7 -3.8 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5520 -0.7 -2.4 conserved protein of unknown function compare
PP_0236 -0.7 -2.2 NAD(P)H-dependent FMN reductase subunit compare
PP_1508 -0.7 -2.2 conserved protein of unknown function compare
PP_4689 -0.7 -3.4 Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein compare
PP_4490 -0.7 -3.6 phenylalanine-4-hydroxylase compare
PP_4470 -0.7 -2.9 putative transcriptional regulator (Arc domain-containing) compare
PP_5045 -0.7 -3.4 tRNA sulfurtransferase compare
PP_3295 -0.7 -2.4 YeeE/YedE family protein compare
PP_1739 -0.7 -2.4 conserved membrane protein of unknown function compare
PP_1491 -0.7 -3.6 CheW domain protein compare
PP_0928 -0.7 -4.6 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_2345 -0.7 -1.9 conserved exported protein of unknown function compare
PP_3589 -0.7 -3.6 serine:H+ symport permease, threonine-insensitive compare


Specific Phenotypes

For 21 genes in this experiment