Experiment set42IT031 for Pseudomonas putida KT2440

Compare to:

P. put PUT 10 MOI 10

200 most important genes:

  gene name fitness t score description  
PP_1774 -7.2 -3.8 conserved exported protein of unknown function compare
PP_1650 -7.0 -34.9 Sensor protein GacS compare
PP_0540 -6.9 -6.7 conserved inner membrane protein compare
PP_4099 -6.9 -27.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1355 -6.5 -7.7 Muropeptide permease AmpG compare
PP_4936 -6.4 -7.6 O-antigen polymerase compare
PP_1776 -6.2 -8.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1800 -6.1 -7.3 Oxidoreductase Rmd compare
PP_1627 -6.1 -11.3 conserved protein of unknown function compare
PP_3627 -5.8 -6.1 conserved protein of unknown function compare
PP_0789 -5.6 -5.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1803 -5.5 -11.7 UDP-sugar epimerase compare
PP_4874 -5.5 -3.3 50S ribosomal protein L9 compare
PP_5279 -5.5 -5.3 conserved protein of unknown function compare
PP_0405 -5.4 -13.1 conserved protein of unknown function compare
PP_0066 -5.4 -10.2 Ribosomal RNA small subunit methyltransferase B compare
PP_1204 -5.4 -5.3 putative Lipoprotein compare
PP_0406 -5.4 -3.7 Nucleotidyltransferase family protein compare
PP_1777 -5.3 -15.8 phosphomannomutase compare
PP_1805 -5.3 -22.1 Polysaccharide biosynthesis protein compare
PP_2148 -5.3 -16.2 transcription-repair coupling factor compare
PP_4938 -5.2 -13.9 putative Glycosyl transferase compare
PP_1663 -5.2 -9.4 conserved exported protein of unknown function compare
PP_0434 -5.2 -7.5 Anhydro-N-acetylmuramic acid kinase compare
PP_2145 -5.1 -3.5 beta-N-acetylglucosaminidase compare
PP_1655 -5.1 -13.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1871 -4.9 -8.1 Protease HtpX compare
PP_4726 -4.8 -3.3 Chaperone protein DnaJ compare
PP_1804 -4.8 -12.0 Glycosyl transferase WbpL compare
PP_1799 -4.7 -14.9 GDP-mannose 4,6-dehydratase compare
PP_0435 -4.6 -5.4 Peptidase, M23/M37 family compare
PP_1780 -4.5 -21.4 putative mannosyltransferase compare
PP_2029 -4.5 -3.7 von Willebrand factor type A domain protein compare
PP_1801 -4.5 -12.2 Glycosyl transferase WbpY compare
PP_1802 -4.4 -16.5 glycosyl transferase compare
PP_1778 -4.4 -5.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4720 -4.3 -2.7 putative RNA binding protein compare
PP_5114 -4.2 -3.9 putative adenine methyltransferase compare
PP_1764 -4.2 -2.9 Phosphoglycolate phosphatase 2 compare
PP_1779 -4.1 -6.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5058 -3.9 -8.0 Carboxy-terminal-processing protease compare
PP_5283 -3.9 -7.0 periplasmic dipeptide transport protein compare
PP_0725 -3.7 -7.9 conserved hypothetical TPR repeat protein compare
PP_1428 -3.5 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_5095 -3.5 -2.1 pyrroline-5-carboxylate reductase compare
PP_0937 -3.4 -5.4 endoribonuclease G (RNAse G) compare
PP_1076 -3.3 -8.1 aquaglyceroporin compare
PP_4171 -3.3 -14.9 conserved exported protein of unknown function compare
PP_1036 -3.2 -10.6 membrane-bound lytic murein transglycosylase F compare
PP_1790 -3.1 -4.7 putative Acylneuraminate cytidylyltransferase compare
PP_2028 -3.1 -4.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5145 -3.1 -17.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_t49 -3.0 -3.4 tRNA-Met compare
PP_2031 -2.9 -2.9 conserved protein of unknown function compare
PP_1798 -2.9 -9.3 Outer membrane efflux protein compare
PP_1770 -2.9 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2027 -2.8 -6.4 conserved exported protein of unknown function compare
PP_0958 -2.8 -7.8 phospholipid ABC transporter ATP-binding subunit compare
PP_5706 -2.6 -3.8 Sec translocation complex - SecG subunit compare
PP_4895 -2.6 -2.5 tRNA dimethylallyltransferase compare
PP_4217 -2.6 -19.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2032 -2.6 -5.7 putative ATPase compare
PP_0960 -2.6 -5.2 phospholipid ABC transporter binding protein compare
PP_0948 -2.6 -2.2 Phosphocarrier protein HPr compare
PP_4515 -2.5 -7.6 Transcriptional regulator, MarR family compare
PP_5217 -2.5 -12.2 Polyphosphate kinase compare
PP_1326 -2.5 -2.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0719 -2.5 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4198 -2.4 -5.0 OmpA family protein compare
PP_5146 -2.3 -6.5 RNA pyrophosphohydrolase compare
PP_1702 -2.2 -4.9 Recombination-associated protein RdgC compare
PP_1523 -2.2 -4.0 conserved protein of unknown function compare
PP_2402 -2.2 -2.5 putative Sensor histidine kinase compare
PP_1075 -2.2 -8.3 glycerol kinase compare
PP_0961 -2.2 -7.3 toluene tolerance protein compare
PP_4944 -2.2 -2.7 Carbamoyltransferase compare
PP_5278 -2.1 -7.0 4-guanidinobutyraldehyde dehydrogenase compare
PP_0293 -2.0 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0401 -2.0 -3.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1654 -1.9 -1.3 cysteine synthase B compare
PP_5439 -1.9 -5.9 conserved protein of unknown function compare
PP_0164 -1.8 -5.6 conserved protein of unknown function compare
PP_4892 -1.8 -6.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2163 -1.8 -4.6 VacJ lipoprotein compare
PP_1268 -1.8 -2.3 putative HtrA suppressor protein sohA compare
PP_4902 -1.8 -2.7 Oligoribonuclease compare
PP_4517 -1.7 -2.1 conserved protein of unknown function compare
PP_2030 -1.7 -3.4 conserved protein of unknown function compare
PP_4159 -1.6 -2.3 Potassium-transporting ATPase C chain compare
PP_1493 -1.6 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2631 -1.6 -2.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4891 -1.6 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4008 -1.5 -4.4 ATP-dependent serine protease compare
PP_1656 -1.5 -3.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_5445 -1.5 -2.8 conserved protein of unknown function compare
PP_5284 -1.5 -4.1 UPF0758 protein PP_5284 compare
PP_1909 -1.5 -2.9 putative septum formation protein compare
PP_1598 -1.5 -3.7 regulatory intramembrane protein RIP zinc protease compare
PP_0855 -1.5 -2.6 conserved protein of unknown function compare
PP_1186 -1.5 -2.0 two component system DNA-binding transcriptional dual regulator compare
PP_1797 -1.4 -5.9 HlyD family secretion protein compare
PP_5101 -1.4 -6.2 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_2903 -1.4 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0959 -1.3 -1.7 phospholipid ABC transporter compare
PP_2306 -1.3 -2.6 conserved exported protein of unknown function compare
PP_1216 -1.3 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5100 -1.3 -2.0 dITP/XTP pyrophosphatase compare
PP_2005 -1.3 -5.3 conserved exported protein of unknown function compare
PP_2433 -1.3 -2.1 conserved protein of unknown function compare
PP_0872 -1.3 -4.2 Peptide chain release factor 3 compare
PP_4798 -1.3 -5.6 putative Membrane-bound lytic murein transglycosylase compare
PP_4829 -1.3 -3.1 putative precorrin-3B synthase compare
PP_4143 -1.3 -3.4 conserved protein of unknown function compare
PP_2096 -1.3 -7.7 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_4471 -1.3 -2.6 Magnesium transporter compare
PP_0962 -1.3 -2.4 toluene-tolerance protein compare
PP_1054 -1.3 -2.4 Type II secretion pathway protein XcpZ compare
PP_1626 -1.3 -4.2 DNA mismatch repair protein MutS compare
PP_4204 -1.2 -4.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1632 -1.2 -1.4 conserved protein of unknown function compare
PP_1733 -1.2 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_0007 -1.2 -3.0 conserved hypothetical protein compare
PP_1789 -1.2 -3.6 Hydrolase, haloacid dehalogenase-like family compare
PP_4172 -1.2 -4.3 conserved exported protein of unknown function compare
PP_4964 -1.2 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0025 -1.2 -1.8 hypothetical protein compare
PP_1309 -1.2 -3.5 conserved exported protein of unknown function compare
PP_1468 -1.2 -1.6 Tyrosine recombinase XerD compare
PP_2098 -1.2 -4.7 D-alanyl-D-alanine carboxypeptidase compare
PP_5504 -1.2 -4.7 conserved protein of unknown function compare
PP_4495 -1.2 -8.0 aromatic amino acid transport protein compare
PP_0941 -1.2 -4.1 putative ribosome associated protein compare
PP_4971 -1.2 -6.2 putative Outer membrane-bound lytic murein transglycolase A compare
PP_4805 -1.2 -5.5 membrane-bound lytic murein transglycosylase B compare
PP_0794 -1.1 -3.2 1-phosphofructokinase monomer compare
PP_5113 -1.1 -3.1 predicted Zn-dependent peptidases compare
PP_1918 -1.1 -6.0 septation protein compare
PP_5640 -1.1 -1.7 conserved protein of unknown function compare
PP_5053 -1.1 -4.0 Protein-export protein SecB compare
PP_1791 -1.1 -5.8 putative Aldolase/synthase compare
PP_4199 -1.1 -1.0 putative Lipoprotein compare
PP_2152 -1.1 -1.9 glycerophosphoryl diester phosphodiesterase compare
PP_1807 -1.1 -5.8 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_3769 -1.1 -3.4 conserved exported protein of unknown function compare
PP_5227 -1.1 -4.6 diaminopimelate decarboxylase compare
PP_3239 -1.0 -1.2 putative cointegrate resolution protein T Tn4652 compare
PP_0787 -1.0 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5090 -1.0 -1.7 putative cell division protein compare
PP_4897 -1.0 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PP_5329 -1.0 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2370 -1.0 -2.2 conserved protein of unknown function compare
PP_1629 -1.0 -3.3 Protein RecA compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_1279 -1.0 -2.6 Probable alginate O-acetylase AlgJ compare
PP_2087 -1.0 -2.3 CmpX protein compare
PP_1237 -0.9 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0564 -0.9 -4.2 conserved protein of unknown function compare
PP_3551 -0.9 -1.4 DNA-binding response regulator, LuxR family compare
PP_1729 -0.9 -0.9 conserved protein of unknown function compare
PP_0685 -0.9 -1.1 conserved protein of unknown function compare
PP_4490 -0.9 -4.6 phenylalanine-4-hydroxylase compare
PP_1217 -0.9 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4497 -0.9 -3.3 conserved protein of unknown function compare
PP_4529 -0.9 -1.2 conserved protein of unknown function compare
PP_4264 -0.9 -4.2 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_3179 -0.9 -2.5 Transcriptional regulator, LysR family compare
PP_1113 -0.9 -5.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0346 -0.9 -4.3 putative Heptose kinase WapQ compare
PP_2023 -0.9 -3.2 Glutathione S-transferase family protein compare
PP_4499 -0.9 -3.0 putative maturation enzyme compare
PP_4009 -0.9 -2.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_2129 -0.9 -2.3 conserved protein of unknown function compare
PP_1775 -0.9 -1.0 Metallo-beta-lactamase family protein compare
PP_4570 -0.9 -5.5 conserved protein of unknown function compare
PP_4980 -0.8 -3.0 ATP-dependent RNA helicase compare
PP_4273 -0.8 -1.3 Transcriptional regulator, MerR family compare
PP_4504 -0.8 -1.2 conserved exported protein of unknown function compare
PP_5SB -0.8 -2.5 5S ribosomal RNA compare
PP_1513 -0.8 -0.8 Ribosomal RNA small subunit methyltransferase J compare
PP_t64 -0.8 -2.3 tRNA-Gly compare
PP_5505 -0.8 -1.5 conserved transmembrane protein of unknown function compare
PP_1110 -0.8 -3.1 serine acetyltransferase compare
PP_5238 -0.8 -3.4 conserved protein of unknown function compare
PP_0834 -0.8 -1.2 Sec translocation complex subunit YajC compare
PP_1440 -0.8 -3.5 tRNA (mo5U34)-methyltransferase compare
PP_4342 -0.8 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_0042 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0809 -0.8 -2.6 disulfide bond formation protein B compare
PP_4820 -0.8 -2.7 tRNA-dihydrouridine synthase B compare
PP_0921 -0.8 -2.4 Transcriptional regulator, ArsR family compare
PP_0254 -0.8 -1.2 conserved protein of unknown function compare
PP_5039 -0.8 -1.3 conserved protein of unknown function compare
PP_2345 -0.8 -2.3 conserved exported protein of unknown function compare
PP_3434 -0.8 -1.7 conserved protein of unknown function compare
PP_1734 -0.8 -1.3 Probable septum site-determining protein MinC compare
PP_1524 -0.8 -2.5 23S rRNA m1G745 methyltransferase compare
PP_5223 -0.8 -2.7 regulator of nucleotide diphosphokinase compare
PP_0127 -0.8 -1.8 Thiol:disulfide interchange protein compare
PP_1512 -0.8 -2.5 conserved protein of unknown function compare
PP_t57 -0.7 -1.4 tRNA-Arg compare


Specific Phenotypes

For 40 genes in this experiment