Experiment set42IT030 for Pseudomonas putida KT2440

Compare to:

P. put PUT 10 MOI 10

200 most important genes:

  gene name fitness t score description  
PP_3627 -8.1 -5.6 conserved protein of unknown function compare
PP_1627 -7.5 -5.2 conserved protein of unknown function compare
PP_0789 -7.1 -4.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1774 -7.0 -3.3 conserved exported protein of unknown function compare
PP_0066 -6.9 -10.2 Ribosomal RNA small subunit methyltransferase B compare
PP_5114 -6.8 -4.2 putative adenine methyltransferase compare
PP_4936 -6.5 -4.5 O-antigen polymerase compare
PP_4099 -6.3 -30.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4938 -6.3 -9.7 putative Glycosyl transferase compare
PP_1650 -6.2 -27.7 Sensor protein GacS compare
PP_0948 -6.2 -1.7 Phosphocarrier protein HPr compare
PP_0540 -6.1 -9.4 conserved inner membrane protein compare
PP_1801 -6.1 -4.2 Glycosyl transferase WbpY compare
PP_0405 -5.9 -9.8 conserved protein of unknown function compare
PP_1776 -5.8 -11.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5279 -5.6 -3.9 conserved protein of unknown function compare
PP_1663 -5.5 -8.4 conserved exported protein of unknown function compare
PP_1804 -5.5 -8.3 Glycosyl transferase WbpL compare
PP_0406 -5.3 -3.6 Nucleotidyltransferase family protein compare
PP_1803 -5.2 -12.0 UDP-sugar epimerase compare
PP_2030 -5.2 -5.6 conserved protein of unknown function compare
PP_1800 -5.1 -11.4 Oxidoreductase Rmd compare
PP_1799 -5.0 -11.7 GDP-mannose 4,6-dehydratase compare
PP_1355 -5.0 -12.5 Muropeptide permease AmpG compare
PP_2148 -5.0 -14.6 transcription-repair coupling factor compare
PP_1428 -4.9 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_2145 -4.9 -3.4 beta-N-acetylglucosaminidase compare
PP_1204 -4.9 -6.7 putative Lipoprotein compare
PP_1805 -4.7 -19.3 Polysaccharide biosynthesis protein compare
PP_4726 -4.7 -3.1 Chaperone protein DnaJ compare
PP_0435 -4.6 -4.5 Peptidase, M23/M37 family compare
PP_1778 -4.6 -3.1 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -4.4 -5.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1780 -4.4 -20.3 putative mannosyltransferase compare
PP_2028 -4.3 -4.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1802 -4.3 -15.5 glycosyl transferase compare
PP_1777 -4.3 -16.1 phosphomannomutase compare
PP_0434 -4.1 -5.2 Anhydro-N-acetylmuramic acid kinase compare
PP_1186 -4.1 -2.5 two component system DNA-binding transcriptional dual regulator compare
PP_0725 -3.8 -7.7 conserved hypothetical TPR repeat protein compare
PP_1871 -3.8 -5.5 Protease HtpX compare
PP_1655 -3.8 -10.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1326 -3.7 -3.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5058 -3.6 -7.7 Carboxy-terminal-processing protease compare
PP_2031 -3.6 -2.3 conserved protein of unknown function compare
PP_1770 -3.6 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5283 -3.3 -6.7 periplasmic dipeptide transport protein compare
PP_2299 -3.3 -4.4 Trigger factor compare
PP_1268 -3.2 -3.0 putative HtrA suppressor protein sohA compare
PP_4874 -3.2 -2.8 50S ribosomal protein L9 compare
PP_1036 -3.2 -9.8 membrane-bound lytic murein transglycosylase F compare
PP_5145 -3.0 -16.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1798 -3.0 -9.6 Outer membrane efflux protein compare
PP_4171 -2.9 -14.5 conserved exported protein of unknown function compare
PP_2032 -2.9 -5.6 putative ATPase compare
PP_4198 -2.7 -5.4 OmpA family protein compare
PP_4895 -2.7 -1.8 tRNA dimethylallyltransferase compare
PP_4217 -2.6 -14.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1764 -2.6 -3.6 Phosphoglycolate phosphatase 2 compare
PP_0958 -2.5 -5.6 phospholipid ABC transporter ATP-binding subunit compare
PP_2027 -2.5 -4.2 conserved exported protein of unknown function compare
PP_1523 -2.5 -3.7 conserved protein of unknown function compare
PP_4720 -2.5 -3.0 putative RNA binding protein compare
PP_2029 -2.4 -1.4 von Willebrand factor type A domain protein compare
PP_t49 -2.4 -2.8 tRNA-Met compare
PP_0719 -2.4 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5217 -2.3 -12.1 Polyphosphate kinase compare
PP_4515 -2.3 -4.9 Transcriptional regulator, MarR family compare
PP_5717 -2.3 -3.0 conserved protein of unknown function compare
PP_1898 -2.3 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_0962 -2.3 -2.3 toluene-tolerance protein compare
PP_4008 -2.2 -6.1 ATP-dependent serine protease compare
PP_5146 -2.2 -5.2 RNA pyrophosphohydrolase compare
PP_2163 -2.2 -3.9 VacJ lipoprotein compare
PP_0960 -2.1 -4.1 phospholipid ABC transporter binding protein compare
PP_5706 -2.1 -2.5 Sec translocation complex - SecG subunit compare
PP_0961 -2.1 -4.8 toluene tolerance protein compare
PP_2633 -2.0 -1.7 conserved protein of unknown function compare
PP_1468 -2.0 -1.9 Tyrosine recombinase XerD compare
PP_4517 -1.9 -1.4 conserved protein of unknown function compare
PP_0959 -1.9 -2.1 phospholipid ABC transporter compare
PP_4892 -1.9 -5.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1742 -1.9 -1.3 conserved inner membrane protein of unknown function compare
PP_0022 -1.9 -1.3 hypothetical protein compare
PP_5604 -1.8 -1.2 putative subtilisin-like serine protease compare
PP_1654 -1.8 -1.2 cysteine synthase B compare
PP_1632 -1.8 -1.2 conserved protein of unknown function compare
PP_4891 -1.8 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0809 -1.8 -5.3 disulfide bond formation protein B compare
PP_1075 -1.8 -5.8 glycerol kinase compare
PP_5278 -1.7 -4.2 4-guanidinobutyraldehyde dehydrogenase compare
PP_0937 -1.7 -3.4 endoribonuclease G (RNAse G) compare
PP_1076 -1.7 -3.7 aquaglyceroporin compare
PP_2581 -1.7 -1.5 conserved protein of unknown function compare
PP_3505 -1.7 -1.6 conserved protein of unknown function compare
PP_0872 -1.6 -3.9 Peptide chain release factor 3 compare
PP_4342 -1.6 -2.9 flagellar synthesis regulator, putative ATPase compare
PP_1702 -1.6 -2.8 Recombination-associated protein RdgC compare
PP_1918 -1.6 -7.6 septation protein compare
PP_4529 -1.6 -1.7 conserved protein of unknown function compare
PP_0941 -1.6 -2.5 putative ribosome associated protein compare
PP_1513 -1.6 -1.6 Ribosomal RNA small subunit methyltransferase J compare
PP_4971 -1.6 -5.8 putative Outer membrane-bound lytic murein transglycolase A compare
PP_4944 -1.6 -2.4 Carbamoyltransferase compare
PP_1909 -1.5 -2.6 putative septum formation protein compare
PP_0127 -1.5 -2.0 Thiol:disulfide interchange protein compare
PP_1293 -1.5 -1.7 molybdopterin synthase small subunit compare
PP_3768 -1.5 -3.8 putative shikimate 5-dehydrogenase compare
PP_1656 -1.5 -4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_5095 -1.5 -1.4 pyrroline-5-carboxylate reductase compare
PP_5113 -1.4 -2.9 predicted Zn-dependent peptidases compare
PP_1055 -1.4 -1.4 Type II secretion pathway protein GspN compare
PP_4964 -1.4 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_5284 -1.4 -3.5 UPF0758 protein PP_5284 compare
PP_1789 -1.4 -3.4 Hydrolase, haloacid dehalogenase-like family compare
PP_3551 -1.4 -1.5 DNA-binding response regulator, LuxR family compare
PP_3769 -1.4 -3.8 conserved exported protein of unknown function compare
PP_2497 -1.4 -1.7 conserved protein of unknown function compare
PP_4172 -1.4 -3.9 conserved exported protein of unknown function compare
PP_5053 -1.4 -3.6 Protein-export protein SecB compare
PP_4199 -1.4 -1.0 putative Lipoprotein compare
PP_2370 -1.4 -2.6 conserved protein of unknown function compare
PP_5SB -1.3 -1.8 5S ribosomal RNA compare
PP_3198 -1.3 -2.1 Ferredoxin, 2Fe-2S compare
PP_1309 -1.3 -3.3 conserved exported protein of unknown function compare
PP_4570 -1.2 -6.8 conserved protein of unknown function compare
PP_4495 -1.2 -7.9 aromatic amino acid transport protein compare
PP_2096 -1.2 -4.7 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_3508 -1.2 -3.0 Protein CobW compare
PP_3434 -1.2 -2.6 conserved protein of unknown function compare
PP_0653 -1.2 -1.2 conserved protein of unknown function compare
PP_1790 -1.2 -1.2 putative Acylneuraminate cytidylyltransferase compare
PP_4264 -1.2 -3.3 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2345 -1.2 -2.1 conserved exported protein of unknown function compare
PP_5483 -1.2 -1.3 conserved protein of unknown function compare
PP_5504 -1.2 -1.9 conserved protein of unknown function compare
PP_0339 -1.2 -3.2 Pyruvate dehydrogenase E1 component compare
PP_4835 -1.2 -1.2 conserved exported protein of unknown function compare
PP_1626 -1.2 -4.0 DNA mismatch repair protein MutS compare
PP_0787 -1.2 -1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1797 -1.2 -3.8 HlyD family secretion protein compare
PP_4159 -1.1 -1.5 Potassium-transporting ATPase C chain compare
PP_1679 -1.1 -1.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4861 -1.1 -2.7 conserved protein of unknown function compare
PP_5328 -1.1 -1.8 putative phosphate transport system permease protein compare
PP_4994 -1.1 -1.5 conserved protein of unknown function compare
PP_5101 -1.1 -3.3 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_4470 -1.1 -3.4 putative transcriptional regulator (Arc domain-containing) compare
PP_1979 -1.1 -2.7 putative Hydrolase compare
PP_5495 -1.1 -1.7 protein of unknown function compare
PP_0164 -1.1 -2.5 conserved protein of unknown function compare
PP_4766 -1.1 -4.1 ATP-dependent RNA helicase compare
PP_5317 -1.1 -1.4 Probable chorismate pyruvate-lyase compare
PP_0195 -1.0 -2.1 conserved protein of unknown function compare
PP_1807 -1.0 -4.8 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_4804 -1.0 -1.7 RlpA-like lipoprotein compare
PP_0630 -1.0 -0.9 DNA gyrase inhibitor YacG compare
PP_4471 -1.0 -2.1 Magnesium transporter compare
PP_1775 -1.0 -1.3 Metallo-beta-lactamase family protein compare
PP_2520 -1.0 -2.0 conserved protein of unknown function compare
PP_2087 -1.0 -1.5 CmpX protein compare
PP_5022 -1.0 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_3726 -1.0 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_5575 -1.0 -0.8 conserved protein of unknown function compare
PP_2313 -1.0 -0.9 conserved membrane protein of unknown function compare
PP_4490 -1.0 -4.0 phenylalanine-4-hydroxylase compare
PP_5270 -1.0 -3.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1439 -1.0 -1.0 conserved exported protein of unknown function compare
PP_1731 -1.0 -2.1 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4489 -1.0 -5.0 sigma-54 dependent transcriptional regulator compare
PP_4006 -1.0 -3.6 Putative arginyl-tRNA--protein transferase compare
PP_4798 -1.0 -3.6 putative Membrane-bound lytic murein transglycosylase compare
PP_2414 -1.0 -1.5 conserved exported protein of unknown function compare
PP_5440 -0.9 -3.6 conserved protein of unknown function compare
PP_2417 -0.9 -1.6 putative Iron ABC transporter, permease protein compare
PP_2118 -0.9 -1.3 conserved protein of unknown function compare
PP_3179 -0.9 -2.5 Transcriptional regulator, LysR family compare
PP_4805 -0.9 -4.6 membrane-bound lytic murein transglycosylase B compare
PP_1410 -0.9 -0.9 conserved protein of unknown function compare
PP_2304 -0.9 -3.0 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_4792 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4214 -0.9 -2.2 pyoverdine biosynthesis related protein compare
PP_5100 -0.9 -1.5 dITP/XTP pyrophosphatase compare
PP_1001 -0.9 -2.8 arginine deiminase compare
PP_5331 -0.9 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_0240 -0.9 -2.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_0116 -0.9 -3.1 putative lipoprotein compare
PP_1912 -0.9 -1.8 Phosphate acyltransferase compare
PP_4084 -0.9 -2.0 conserved protein of unknown function compare
PP_5098 -0.9 -3.5 methionine biosynthesis protein MetW compare
PP_5218 -0.9 -2.1 DedA family protein compare
PP_1279 -0.9 -2.3 Probable alginate O-acetylase AlgJ compare
PP_0874 -0.9 -1.6 conserved protein of unknown function compare
PP_0007 -0.9 -1.5 conserved hypothetical protein compare
PP_1730 -0.9 -2.2 Probable M18 family aminopeptidase 2 compare
PP_1217 -0.8 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1719 -0.8 -3.6 Tail-specific protease prc compare
PP_3346 -0.8 -1.1 Nickel transporter ATP-binding protein compare
PP_0839 -0.8 -2.6 tRNA Cm32/Um32 methyltransferase compare
PP_1791 -0.8 -4.5 putative Aldolase/synthase compare


Specific Phenotypes

For 26 genes in this experiment