Experiment set42IT028 for Pseudomonas putida KT2440

Compare to:

P. put South MOI 0.1

200 most detrimental genes:

  gene name fitness t score description  
PP_4939 +3.3 14.1 conserved protein of unknown function compare
PP_4940 +3.0 18.2 Putative glycosyltransferase compare
PP_3821 +2.5 18.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4710 +2.4 17.7 tRNA pseudouridine 55 synthase compare
PP_4722 +2.3 11.4 Transcription elongation factor GreA compare
PP_0063 +2.3 11.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1099 +2.0 6.8 Cold shock protein CapB compare
PP_4937 +2.0 4.7 toluene tolerance protein compare
PP_4942 +2.0 6.5 conserved protein of unknown function compare
PP_0345 +2.0 9.0 putative Heptose kinase WapP compare
PP_0123 +1.9 13.6 DNA polymerase I, 5 compare
PP_4943 +1.8 5.8 putative Glycosyl transferase compare
PP_0547 +1.7 7.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1994 +1.7 4.2 tRNA pseudouridine (38-40)synthase compare
PP_4265 +1.6 5.6 DNA-binding transcriptional dual regulator compare
PP_0832 +1.6 6.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0846 +1.6 3.6 DnaK-like molecular chaperone specific for IscU compare
PP_5350 +1.6 6.9 Transcriptional regulator, RpiR family compare
PP_4122 +1.6 2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4700 +1.6 4.4 pantothenate synthetase compare
PP_4379 +1.5 6.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0214 +1.5 9.6 4-aminobutyrate aminotransferase compare
PP_2378 +1.5 3.7 Fe/S biogenesis protein NfuA compare
PP_1786 +1.5 12.0 putative Glycosyl transferase compare
PP_1362 +1.5 7.2 pyruvate kinase II compare
PP_2088 +1.4 4.7 RNA polymerase sigma factor SigX compare
PP_0246 +1.4 3.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_1795 +1.4 10.9 conserved protein of unknown function compare
PP_0439 +1.4 5.6 conserved protein of unknown function compare
PP_2144 +1.4 6.8 Transcriptional regulator, TetR family compare
PP_0003 +1.3 5.1 16S RNA methyltransferase compare
PP_1366 +1.3 3.2 Transcriptional regulator MvaT, P16 subunit compare
PP_0963 +1.3 3.8 putative BolA family protein compare
PP_0674 +1.3 10.8 ADP/ATP ratio sensor and inhibitor of translation compare
PP_2302 +1.3 6.7 DNA-binding, ATP-dependent protease compare
PP_2929 +1.3 8.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2379 +1.3 7.9 putative cytochrome oxidase biogenesis protein compare
PP_5508 +1.3 2.0 conserved protein of unknown function compare
PP_t10 +1.3 2.5 tRNA-Pro compare
PP_0190 +1.2 6.7 putative disulfide bond formation protein B compare
PP_4126 +1.2 2.2 NADH-quinone oxidoreductase subunit I compare
PP_5179 +1.2 6.9 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_1226 +1.2 5.0 pre-queuosine 0 synthase compare
PP_t29 +1.2 2.0 tRNA-Ala compare
PP_2319 +1.2 6.8 conserved protein of unknown function compare
PP_0735 +1.2 3.0 molybdopterin-synthase adenylyltransferase compare
PP_0065 +1.2 3.5 NAD-binding component of TrK potassium transporter compare
PP_4811 +1.2 7.0 Gamma-glutamyl phosphate reductase compare
PP_5294 +1.2 8.1 Ribonuclease PH compare
PP_4475 +1.2 7.1 succinylglutamate desuccinylase compare
PP_0182 +1.2 4.2 conserved protein of unknown function compare
PP_4120 +1.2 4.8 NADH-quinone oxidoreductase subunit B compare
PP_1190 +1.2 3.7 conserved protein of unknown function compare
PP_3903 +1.2 2.2 conserved protein of unknown function compare
PP_0247 +1.1 8.1 Osmolarity sensor protein EnvZ compare
PP_1787 +1.1 4.1 conserved protein of unknown function compare
PP_1328 +1.1 4.7 Protein MraZ compare
PP_2160 +1.1 4.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4546 +1.1 4.1 ATP-dependent helicase HrpA compare
PP_1320 +1.1 6.6 stringent starvation protein A compare
PP_4859 +1.1 5.8 Transcriptional regulator, TetR family compare
PP_0697 +1.1 7.7 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_0888 +1.1 3.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1022 +1.1 5.7 glucose 6-phosphate-1-dehydrogenase compare
PP_5236 +1.0 7.4 conserved protein of unknown function compare
PP_1325 +1.0 6.2 putative lipoprotein compare
PP_5028 +1.0 3.9 proline iminopeptidase compare
PP_4787 +1.0 3.1 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4129 +1.0 3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3957 +1.0 8.6 choline/carnitine/betaine transporter BetTC compare
PP_2336 +1.0 3.0 aconitate hydratase 1 compare
PP_1319 +1.0 4.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1367 +1.0 3.8 formyltetrahydrofolate hydrolase compare
PP_5338 +1.0 3.8 aspartate ammonia-lyase compare
PP_4532 +1.0 2.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0440 +1.0 3.5 Elongation factor Tu-A compare
PP_4824 +1.0 4.4 Sensor histidine kinase/response regulator compare
PP_4910 +1.0 3.4 conserved protein of unknown function compare
PP_1324 +1.0 4.5 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_1736 +0.9 2.6 conserved protein of unknown function compare
PP_4561 +0.9 1.6 stress response protein compare
PP_1225 +0.9 4.1 7-carboxy-7-deazaguanine synthase compare
PP_1369 +0.9 5.1 conserved protein of unknown function compare
PP_4721 +0.9 4.8 conserved membrane protein of unknown function compare
PP_4482 +0.9 2.8 Transcriptional regulator, AraC family compare
PP_4917 +0.9 4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0624 +0.9 5.7 Uncharacterized protein YfiH compare
PP_5178 +0.9 6.3 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_1528 +0.9 1.9 conserved protein of unknown function compare
PP_3043 +0.9 2.6 conserved protein of unknown function compare
PP_4131 +0.9 4.9 NADH-quinone oxidoreductase subunit N compare
PP_1808 +0.9 2.2 glucose-6-phosphate isomerase compare
PP_5177 +0.9 4.7 spermidine/putrescine ABC transporter - permease subunit compare
PP_2976 +0.9 1.2 putative transposase compare
PP_1845 +0.9 2.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_4121 +0.9 4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0393 +0.9 2.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2328 +0.9 3.4 Phosphoadenosine phosphosulfate reductase compare
PP_2884 +0.9 3.8 XRE family transcriptional regulator compare
PP_0368 +0.8 6.9 putative Acyl-CoA dehydrogenase compare
PP_3239 +0.8 3.3 putative cointegrate resolution protein T Tn4652 compare
PP_2169 +0.8 4.2 tRNA-dihydrouridine synthase A compare
PP_4988 +0.8 4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0241 +0.8 2.8 Transporter compare
PP_4946 +0.8 5.8 sodium/L-proline transporter compare
PP_2107 +0.8 1.5 conserved protein of unknown function compare
PP_4098 +0.8 1.6 UvrABC system protein C compare
PP_1368 +0.8 4.0 putative membrane protein containing a glycosyltransferase domain compare
PP_1364 +0.8 4.9 conserved exported protein of unknown function compare
PP_5322 +0.8 5.2 putative metal ion transporter compare
PP_5026 +0.8 6.0 Glucans biosynthesis protein G compare
PP_5303 +0.8 5.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5064 +0.8 5.7 choline dehydrogenase compare
PP_3040 +0.8 2.3 Pyocin R2_PP, holin compare
PP_1793 +0.8 7.3 Glycosyl transferase, group 2 family protein compare
PP_2136 +0.8 3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4124 +0.8 3.7 NADH-quinone oxidoreductase subunit G compare
PP_2899 +0.8 1.7 conserved exported protein of unknown function compare
PP_1189 +0.8 3.9 conserved hypothetical protein compare
PP_4860 +0.8 6.1 putative Mannose-6-phosphate isomerase compare
PP_4654 +0.8 5.3 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_5327 +0.8 2.9 putative phosphate ABC transporter, permease subunit compare
PP_0339 +0.8 2.9 Pyruvate dehydrogenase E1 component compare
PP_5054 +0.8 1.2 glutaredoxin 3 compare
PP_4913 +0.8 2.2 conserved protein of unknown function compare
PP_0083 +0.8 3.9 tryptophan synthase beta chain compare
PP_3649 +0.8 2.4 Transcriptional regulator, GntR family compare
PP_3312 +0.8 2.1 putative Heat shock protein compare
PP_2462 +0.8 1.8 conserved protein of unknown function compare
PP_5201 +0.8 1.8 conserved protein of unknown function, UPF0149 family compare
PP_2475 +0.8 3.1 Transcriptional regulator, TetR family compare
PP_1370 +0.8 4.9 Glycosyl transferase, group 1 family protein compare
PP_3924 +0.8 2.8 conserved protein of unknown function compare
PP_5051 +0.8 3.1 conserved protein of unknown function compare
PP_4909 +0.8 3.9 phosphoserine phosphatase compare
PP_5083 +0.7 1.6 putative Type IV pili biogenesis protein PilM compare
PP_0869 +0.7 3.0 osmoprotectant ABC transporter permease subunit compare
PP_4989 +0.7 2.5 Protein PilJ compare
PP_1844 +0.7 2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4653 +0.7 4.0 adenine:H+ symporter compare
PP_1972 +0.7 3.8 aromatic-amino-acid aminotransferase compare
PP_5198 +0.7 3.1 conserved protein of unknown function compare
PP_5181 +0.7 5.2 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_1589 +0.7 4.4 uridylyltransferase compare
PP_1231 +0.7 3.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5533 +0.7 1.4 conserved protein of unknown function compare
PP_2928 +0.7 4.8 Saccharopine dehydrogenase compare
PP_1038 +0.7 1.3 conserved protein of unknown function compare
PP_1261 +0.7 2.5 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5073 +0.7 2.2 conserved exported protein of unknown function compare
PP_5640 +0.7 2.1 conserved protein of unknown function compare
PP_5025 +0.7 4.2 Glucans biosynthesis glucosyltransferase H compare
PP_0504 +0.7 2.9 Outer membrane protein OprG compare
PP_4684 +0.7 4.1 conserved protein of unknown function with kinase-like domain compare
PP_1321 +0.7 4.6 ClpXP protease specificity-enhancing factor compare
PP_1310 +0.7 2.7 conserved hypothetical protein compare
PP_4130 +0.7 2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3880 +0.7 1.5 conserved exported protein of unknown function compare
PP_t12 +0.7 1.1 tRNA-Thr compare
PP_3923 +0.7 3.3 Phosphoglycerate mutase compare
PP_5575 +0.7 1.6 conserved protein of unknown function compare
PP_1322 +0.7 1.5 putative Lipoprotein compare
PP_1962 +0.7 3.4 Site-specific recombinase, phage integrase family compare
PP_5313 +0.7 1.9 DNA-binding protein HU-alpha compare
PP_0757 +0.7 2.8 conserved protein of unknown function compare
PP_2337 +0.7 2.0 aconitate isomerase compare
PP_1191 +0.7 3.2 S4 domain protein compare
PP_1353 +0.6 2.0 conserved membrane protein of unknown function compare
PP_0377 +0.6 1.7 coenzyme PQQ synthesis protein D compare
PP_1995 +0.6 3.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3150 +0.6 3.7 conserved protein of unknown function compare
PP_1917 +0.6 3.5 4-amino-4-deoxychorismate lyase compare
PP_4916 +0.6 3.3 putative esterase compare
PP_0505 +0.6 2.5 conserved protein of unknown function compare
PP_2449 +0.6 3.6 conserved protein of unknown function compare
PP_2000 +0.6 1.1 amidophosphoribosyl transferase compare
PP_4377 +0.6 2.8 putative Flagellin FlaG compare
PP_1176 +0.6 1.5 conserved protein of unknown function compare
PP_2633 +0.6 1.7 conserved protein of unknown function compare
PP_4900 +0.6 4.2 epoxyqueuosine reductase compare
PP_4184 +0.6 4.0 branched chain amino acid transporter compare
PP_0292 +0.6 2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2448 +0.6 4.3 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) compare
PP_0593 +0.6 0.9 putative ribosome-binding factor compare
PP_4786 +0.6 2.3 conserved protein of unknown function compare
PP_3902 +0.6 1.4 conserved protein of unknown function compare
PP_1372 +0.6 3.1 conserved protein of unknown function compare
PP_2122 +0.6 2.2 molybdenum cofactor biosynthesis protein B compare
PP_4150 +0.6 2.5 microcin C transporter - ATP binding subunit compare
PP_0653 +0.6 1.1 conserved protein of unknown function compare
PP_4985 +0.6 2.6 16S rRNA m3U1498 methyltransferase compare
PP_4699 +0.6 3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5580 +0.6 1.3 protein of unknown function compare
PP_0058 +0.6 4.1 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1482 +0.6 1.8 polyamine ABC transporter, permease protein compare
PP_4238 +0.6 1.8 conserved protein of unknown function compare
PP_4829 +0.6 2.0 putative precorrin-3B synthase compare
PP_3380 +0.6 2.8 2-ketogluconate utilization repressor compare
PP_4978 +0.6 3.7 conserved protein of unknown function compare
PP_4109 +0.6 1.9 conserved protein of unknown function compare


Specific Phenotypes

For 22 genes in this experiment