Experiment set42IT026 for Pseudomonas putida KT2440

Compare to:

P. put South MOI 1

200 most important genes:

  gene name fitness t score description  
PP_4936 -6.5 -6.3 O-antigen polymerase compare
PP_4099 -6.2 -30.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -5.9 -32.4 Sensor protein GacS compare
PP_5114 -5.7 -4.7 putative adenine methyltransferase compare
PP_1355 -5.7 -12.7 Muropeptide permease AmpG compare
PP_1800 -5.6 -10.1 Oxidoreductase Rmd compare
PP_2148 -5.5 -14.6 transcription-repair coupling factor compare
PP_4874 -5.4 -3.1 50S ribosomal protein L9 compare
PP_0959 -5.4 -3.5 phospholipid ABC transporter compare
PP_1776 -5.4 -15.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1627 -5.4 -9.3 conserved protein of unknown function compare
PP_0540 -5.4 -10.6 conserved inner membrane protein compare
PP_4199 -5.3 -1.6 putative Lipoprotein compare
PP_4938 -5.3 -13.2 putative Glycosyl transferase compare
PP_1326 -5.2 -3.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2145 -5.0 -3.5 beta-N-acetylglucosaminidase compare
PP_0789 -5.0 -6.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0405 -4.9 -14.6 conserved protein of unknown function compare
PP_1803 -4.9 -14.6 UDP-sugar epimerase compare
PP_3627 -4.8 -5.6 conserved protein of unknown function compare
PP_1805 -4.8 -21.1 Polysaccharide biosynthesis protein compare
PP_1780 -4.8 -20.6 putative mannosyltransferase compare
PP_4726 -4.7 -3.3 Chaperone protein DnaJ compare
PP_1799 -4.7 -15.3 GDP-mannose 4,6-dehydratase compare
PP_1663 -4.7 -8.9 conserved exported protein of unknown function compare
PP_0066 -4.7 -7.6 Ribosomal RNA small subunit methyltransferase B compare
PP_1778 -4.7 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1774 -4.7 -2.4 conserved exported protein of unknown function compare
PP_1204 -4.7 -7.1 putative Lipoprotein compare
PP_1801 -4.6 -12.5 Glycosyl transferase WbpY compare
PP_1779 -4.6 -5.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1804 -4.5 -10.4 Glycosyl transferase WbpL compare
PP_1655 -4.4 -13.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0434 -4.4 -6.6 Anhydro-N-acetylmuramic acid kinase compare
PP_1777 -4.4 -16.0 phosphomannomutase compare
PP_0406 -4.4 -5.2 Nucleotidyltransferase family protein compare
PP_1871 -4.1 -5.8 Protease HtpX compare
PP_1764 -4.1 -2.8 Phosphoglycolate phosphatase 2 compare
PP_1790 -4.0 -4.0 putative Acylneuraminate cytidylyltransferase compare
PP_1036 -3.9 -12.1 membrane-bound lytic murein transglycosylase F compare
PP_1802 -3.9 -15.2 glycosyl transferase compare
PP_0435 -3.8 -8.0 Peptidase, M23/M37 family compare
PP_1702 -3.6 -5.7 Recombination-associated protein RdgC compare
PP_5058 -3.2 -6.5 Carboxy-terminal-processing protease compare
PP_2309 -3.1 -1.8 conserved protein of unknown function compare
PP_5217 -3.1 -12.9 Polyphosphate kinase compare
PP_5145 -3.1 -19.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5283 -3.0 -6.2 periplasmic dipeptide transport protein compare
PP_4171 -3.0 -13.6 conserved exported protein of unknown function compare
PP_0937 -3.0 -4.5 endoribonuclease G (RNAse G) compare
PP_1186 -3.0 -2.4 two component system DNA-binding transcriptional dual regulator compare
PP_0960 -2.9 -6.0 phospholipid ABC transporter binding protein compare
PP_1770 -2.9 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0962 -2.8 -2.7 toluene-tolerance protein compare
PP_5146 -2.7 -7.1 RNA pyrophosphohydrolase compare
PP_4720 -2.7 -2.7 putative RNA binding protein compare
PP_0948 -2.7 -2.1 Phosphocarrier protein HPr compare
PP_1076 -2.7 -7.8 aquaglyceroporin compare
PP_0958 -2.7 -6.1 phospholipid ABC transporter ATP-binding subunit compare
PP_1789 -2.6 -5.2 Hydrolase, haloacid dehalogenase-like family compare
PP_1798 -2.6 -8.2 Outer membrane efflux protein compare
PP_4561 -2.6 -1.5 stress response protein compare
PP_4902 -2.5 -3.2 Oligoribonuclease compare
PP_4217 -2.5 -17.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0961 -2.4 -6.3 toluene tolerance protein compare
PP_5279 -2.4 -4.6 conserved protein of unknown function compare
PP_4891 -2.4 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0809 -2.4 -6.5 disulfide bond formation protein B compare
PP_2029 -2.4 -2.3 von Willebrand factor type A domain protein compare
PP_0719 -2.4 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_t49 -2.4 -2.0 tRNA-Met compare
PP_1523 -2.3 -4.7 conserved protein of unknown function compare
PP_2414 -2.3 -2.5 conserved exported protein of unknown function compare
PP_0725 -2.3 -5.6 conserved hypothetical TPR repeat protein compare
PP_1898 -2.3 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4515 -2.2 -6.6 Transcriptional regulator, MarR family compare
PP_0164 -2.2 -5.1 conserved protein of unknown function compare
PP_1075 -2.2 -8.0 glycerol kinase compare
PP_2903 -2.1 -3.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2032 -2.1 -4.6 putative ATPase compare
PP_4828 -2.1 -1.4 Precorrin-8X methylmutase compare
PP_1598 -2.1 -3.7 regulatory intramembrane protein RIP zinc protease compare
PP_2402 -2.0 -2.2 putative Sensor histidine kinase compare
PP_0794 -2.0 -4.4 1-phosphofructokinase monomer compare
PP_2163 -1.9 -5.6 VacJ lipoprotein compare
PP_4964 -1.9 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2031 -1.9 -1.9 conserved protein of unknown function compare
PP_0127 -1.8 -2.3 Thiol:disulfide interchange protein compare
PP_1654 -1.8 -1.2 cysteine synthase B compare
PP_2030 -1.8 -3.4 conserved protein of unknown function compare
PP_2028 -1.8 -2.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4895 -1.8 -3.1 tRNA dimethylallyltransferase compare
PP_2299 -1.7 -2.7 Trigger factor compare
PP_5439 -1.7 -6.0 conserved protein of unknown function compare
PP_2027 -1.7 -3.8 conserved exported protein of unknown function compare
PP_4971 -1.6 -8.0 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1656 -1.5 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_5101 -1.5 -5.8 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_4892 -1.5 -5.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1110 -1.5 -2.9 serine acetyltransferase compare
PP_1763 -1.5 -1.8 putative oxidoreductase compare
PP_0801 -1.4 -1.6 conserved exported protein of unknown function compare
PP_5053 -1.4 -3.8 Protein-export protein SecB compare
PP_4835 -1.4 -3.4 conserved exported protein of unknown function compare
PP_4198 -1.4 -3.8 OmpA family protein compare
PP_5113 -1.4 -3.2 predicted Zn-dependent peptidases compare
PP_5095 -1.4 -1.1 pyrroline-5-carboxylate reductase compare
PP_1918 -1.4 -7.1 septation protein compare
PP_0166 -1.4 -9.7 HlyD family secretion protein compare
PP_1909 -1.3 -2.7 putative septum formation protein compare
PP_5604 -1.3 -1.8 putative subtilisin-like serine protease compare
PP_4471 -1.3 -3.3 Magnesium transporter compare
PP_5284 -1.3 -3.2 UPF0758 protein PP_5284 compare
PP_4519 -1.3 -7.9 Agglutination protein compare
PP_0787 -1.3 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2820 -1.3 -1.6 HTH-type transcriptional regulator nfxB compare
PP_0167 -1.2 -9.3 Toxin secretion ATP-binding protein compare
PP_1797 -1.2 -5.3 HlyD family secretion protein compare
PP_5706 -1.2 -1.8 Sec translocation complex - SecG subunit compare
PP_1807 -1.2 -6.3 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_1734 -1.2 -2.2 Probable septum site-determining protein MinC compare
PP_4495 -1.2 -7.6 aromatic amino acid transport protein compare
PP_1055 -1.2 -1.4 Type II secretion pathway protein GspN compare
PP_4798 -1.2 -4.7 putative Membrane-bound lytic murein transglycosylase compare
PP_5093 -1.2 -1.3 twitching motility protein compare
PP_2196 -1.2 -1.8 agmatinase compare
PP_1783 -1.2 -1.6 dTDP-glucose pyrophosphorylase compare
PP_2720 -1.1 -1.5 conserved protein of unknown function compare
PP_4805 -1.1 -5.2 membrane-bound lytic murein transglycosylase B compare
PP_4094 -1.1 -1.3 conserved protein of unknown function compare
PP_4555 -1.1 -2.7 conserved protein of unknown function compare
PP_5100 -1.1 -1.7 dITP/XTP pyrophosphatase compare
PP_1164 -1.1 -1.7 Transcriptional regulator, LysR family compare
PP_3307 -1.1 -1.5 conserved protein of unknown function compare
PP_1513 -1.1 -2.4 Ribosomal RNA small subunit methyltransferase J compare
PP_2118 -1.1 -1.7 conserved protein of unknown function compare
PP_0346 -1.1 -4.5 putative Heptose kinase WapQ compare
PP_1626 -1.1 -4.1 DNA mismatch repair protein MutS compare
PP_0949 -1.1 -3.6 putative ATP-binding protein UPF0042 compare
PP_2345 -1.1 -2.6 conserved exported protein of unknown function compare
PP_0168 -1.1 -8.6 putative surface adhesion protein compare
PP_4570 -1.1 -6.2 conserved protein of unknown function compare
PP_1309 -1.1 -3.2 conserved exported protein of unknown function compare
PP_4009 -1.1 -3.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_4264 -1.1 -4.4 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4961 -1.1 -1.4 putative Lipoprotein compare
PP_4504 -1.0 -1.4 conserved exported protein of unknown function compare
PP_0691 -1.0 -1.3 Glutamate 5-kinase compare
PP_0872 -1.0 -2.8 Peptide chain release factor 3 compare
PP_1730 -1.0 -3.2 Probable M18 family aminopeptidase 2 compare
PP_0564 -1.0 -4.6 conserved protein of unknown function compare
PP_5278 -1.0 -2.6 4-guanidinobutyraldehyde dehydrogenase compare
PP_3179 -1.0 -3.8 Transcriptional regulator, LysR family compare
PP_4875 -1.0 -1.6 conserved membrane protein of unknown function compare
PP_0165 -1.0 -6.9 GGDEF domain protein compare
PP_0401 -1.0 -1.7 Ribosomal RNA small subunit methyltransferase A compare
PP_5717 -1.0 -1.7 conserved protein of unknown function compare
PP_4517 -1.0 -0.8 conserved protein of unknown function compare
PP_4340 -1.0 -2.2 response regulator for chemotactic signal transduction compare
PP_5218 -1.0 -2.4 DedA family protein compare
PP_1187 -1.0 -3.2 sensor protein compare
PP_5654 -1.0 -1.4 putative phosphotriesterase compare
PP_2999 -0.9 -1.2 Glyoxalase family protein compare
PP_4143 -0.9 -3.1 conserved protein of unknown function compare
PP_4980 -0.9 -3.2 ATP-dependent RNA helicase compare
PP_0839 -0.9 -1.5 tRNA Cm32/Um32 methyltransferase compare
PP_4808 -0.9 -1.7 23S rRNA m3psi1915 methyltransferase compare
PP_1215 -0.9 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_t12 -0.9 -0.9 tRNA-Thr compare
PP_3769 -0.9 -2.9 conserved exported protein of unknown function compare
PP_1097 -0.9 -0.9 Methionine--tRNA ligase compare
PP_1113 -0.9 -5.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2132 -0.9 -1.7 Universal stress protein compare
PP_4373 -0.9 -6.2 Transcriptional regulator FleQ compare
PP_1629 -0.9 -2.7 Protein RecA compare
PP_4006 -0.9 -4.4 Putative arginyl-tRNA--protein transferase compare
PP_1826 -0.9 -2.1 Hydrolase, isochorismatase family compare
PP_2387 -0.9 -1.8 conserved protein of unknown function compare
PP_1775 -0.9 -1.2 Metallo-beta-lactamase family protein compare
PP_4173 -0.9 -2.9 Sensor histidine kinase/response regulator compare
PP_0218 -0.9 -3.6 Sensory box protein compare
PP_2087 -0.9 -1.2 CmpX protein compare
PP_1410 -0.9 -1.0 conserved protein of unknown function compare
PP_2098 -0.9 -4.7 D-alanyl-D-alanine carboxypeptidase compare
PP_5191 -0.9 -2.5 conserved exported protein of unknown function compare
PP_0941 -0.9 -2.1 putative ribosome associated protein compare
PP_0120 -0.9 -3.3 putative zinc ABC transporter compare
PP_4490 -0.9 -4.3 phenylalanine-4-hydroxylase compare
PP_t11 -0.9 -1.6 tRNA-Lys compare
PP_4172 -0.9 -3.2 conserved exported protein of unknown function compare
PP_4008 -0.8 -2.2 ATP-dependent serine protease compare
PP_4489 -0.8 -5.1 sigma-54 dependent transcriptional regulator compare
PP_1912 -0.8 -2.1 Phosphate acyltransferase compare
PP_5310 -0.8 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_1279 -0.8 -2.8 Probable alginate O-acetylase AlgJ compare
PP_3055 -0.8 -2.7 Pyocin R2_PP, tail formation protein compare
PP_4133 -0.8 -1.9 Transcriptional regulator-related protein compare
PP_5473 -0.8 -1.0 putative transcriptional regulator, LuxR family compare
PP_3216 -0.8 -3.1 putative cysteine dioxygenase compare
PP_4581 -0.8 -1.5 putative amidotransferase compare


Specific Phenotypes

For 28 genes in this experiment