Experiment set42IT025 for Pseudomonas putida KT2440

Compare to:

P. put South MOI 10

200 most important genes:

  gene name fitness t score description  
PP_3627 -8.5 -4.4 conserved protein of unknown function compare
PP_4720 -8.0 -2.5 putative RNA binding protein compare
PP_0789 -7.3 -3.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4517 -6.9 -2.5 conserved protein of unknown function compare
PP_4910 -6.5 -2.6 conserved protein of unknown function compare
PP_1355 -6.5 -7.8 Muropeptide permease AmpG compare
PP_0434 -6.5 -4.5 Anhydro-N-acetylmuramic acid kinase compare
PP_5571 -6.2 -1.1 conserved protein of unknown function compare
PP_5279 -5.9 -3.4 conserved protein of unknown function compare
PP_0834 -5.9 -2.4 Sec translocation complex subunit YajC compare
PP_2370 -5.5 -3.3 conserved protein of unknown function compare
PP_4874 -5.4 -1.9 50S ribosomal protein L9 compare
PP_4642 -5.3 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_1268 -5.3 -2.4 putative HtrA suppressor protein sohA compare
PP_1216 -5.3 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3392 -5.3 -1.4 conserved protein of unknown function compare
PP_4902 -4.9 -2.5 Oligoribonuclease compare
PP_1164 -4.8 -1.2 Transcriptional regulator, LysR family compare
PP_4726 -4.8 -2.1 Chaperone protein DnaJ compare
PP_1439 -4.8 -1.2 conserved exported protein of unknown function compare
PP_0405 -4.7 -11.4 conserved protein of unknown function compare
PP_4099 -4.4 -27.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5706 -4.3 -2.2 Sec translocation complex - SecG subunit compare
PP_5114 -4.3 -2.8 putative adenine methyltransferase compare
PP_1764 -4.2 -2.4 Phosphoglycolate phosphatase 2 compare
PP_2060 -3.9 -1.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0949 -3.9 -7.4 putative ATP-binding protein UPF0042 compare
PP_1650 -3.7 -22.6 Sensor protein GacS compare
PP_0833 -3.7 -1.9 queuine tRNA-ribosyltransferase compare
PP_0959 -3.6 -2.3 phospholipid ABC transporter compare
PP_3052 -3.6 -1.1 conserved protein of unknown function compare
PP_2148 -3.5 -8.6 transcription-repair coupling factor compare
PP_1293 -3.5 -1.5 molybdopterin synthase small subunit compare
PP_1309 -3.4 -4.9 conserved exported protein of unknown function compare
PP_1055 -3.4 -1.2 Type II secretion pathway protein GspN compare
PP_2163 -3.4 -5.2 VacJ lipoprotein compare
PP_5095 -3.4 -1.2 pyrroline-5-carboxylate reductase compare
PP_1802 -3.3 -9.5 glycosyl transferase compare
PP_1776 -3.3 -8.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2402 -3.2 -1.5 putative Sensor histidine kinase compare
PP_1803 -3.1 -8.1 UDP-sugar epimerase compare
PP_0393 -3.0 -3.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1805 -2.9 -10.1 Polysaccharide biosynthesis protein compare
PP_1801 -2.9 -5.5 Glycosyl transferase WbpY compare
PP_0905 -2.9 -1.5 conserved exported protein of unknown function compare
PP_1523 -2.9 -2.8 conserved protein of unknown function compare
PP_5283 -2.8 -4.9 periplasmic dipeptide transport protein compare
PP_5216 -2.7 -1.3 exopolyphosphatase compare
PP_1804 -2.7 -5.5 Glycosyl transferase WbpL compare
PP_5100 -2.7 -2.7 dITP/XTP pyrophosphatase compare
PP_1774 -2.7 -1.4 conserved exported protein of unknown function compare
PP_1734 -2.7 -3.8 Probable septum site-determining protein MinC compare
PP_1799 -2.7 -6.9 GDP-mannose 4,6-dehydratase compare
PP_4892 -2.6 -6.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1779 -2.6 -4.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_1548 -2.6 -1.1 conserved protein of unknown function compare
PP_0435 -2.6 -6.2 Peptidase, M23/M37 family compare
PP_0540 -2.6 -3.8 conserved inner membrane protein compare
PP_5146 -2.6 -4.7 RNA pyrophosphohydrolase compare
PP_4570 -2.6 -6.0 conserved protein of unknown function compare
PP_1780 -2.5 -10.2 putative mannosyltransferase compare
PP_0406 -2.5 -2.2 Nucleotidyltransferase family protein compare
PP_0719 -2.4 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1075 -2.4 -5.5 glycerol kinase compare
PP_1800 -2.4 -4.7 Oxidoreductase Rmd compare
PP_4993 -2.3 -3.4 Glutathione synthetase compare
PP_0962 -2.3 -1.9 toluene-tolerance protein compare
PP_0653 -2.3 -1.2 conserved protein of unknown function compare
PP_2747 -2.3 -1.5 conserved protein of unknown function compare
PP_5329 -2.3 -4.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1777 -2.2 -7.3 phosphomannomutase compare
PP_5055 -2.2 -2.1 Sulfurtransferase compare
PP_4891 -2.2 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1663 -2.1 -3.4 conserved exported protein of unknown function compare
PP_5278 -2.1 -3.6 4-guanidinobutyraldehyde dehydrogenase compare
PP_4004 -2.1 -2.3 DNA translocase FtsK compare
PP_1627 -2.1 -4.2 conserved protein of unknown function compare
PP_4808 -2.1 -1.3 23S rRNA m3psi1915 methyltransferase compare
PP_0292 -2.1 -1.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5267 -2.1 -1.6 putative cytochrome c5 compare
PP_2299 -2.1 -1.8 Trigger factor compare
PP_2903 -2.0 -1.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4126 -2.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_2880 -1.9 -1.5 Transcriptional regulator, TetR family compare
PP_4944 -1.9 -2.2 Carbamoyltransferase compare
PP_t49 -1.9 -2.0 tRNA-Met compare
PP_2414 -1.9 -1.1 conserved exported protein of unknown function compare
PP_4066 -1.9 -2.4 methylglutaconyl-CoA hydratase compare
PP_5508 -1.9 -0.8 conserved protein of unknown function compare
PP_4936 -1.9 -3.7 O-antigen polymerase compare
PP_0119 -1.9 -2.2 putative zinc uptake regulation protein ZUR compare
PP_5145 -1.9 -9.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4792 -1.8 -1.1 conserved exported protein of unknown function compare
PP_0961 -1.8 -4.0 toluene tolerance protein compare
PP_1562 -1.8 -1.7 putative Phage terminase, small subunit compare
PP_4204 -1.8 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1655 -1.8 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0957 -1.8 -1.4 D-arabinose 5-phosphate isomerase compare
PP_5284 -1.8 -3.6 UPF0758 protein PP_5284 compare
PP_0232 -1.8 -1.2 ATP-binding taurine transporter subunit compare
PP_2032 -1.7 -3.3 putative ATPase compare
PP_4196 -1.7 -1.1 conserved exported protein of unknown function compare
PP_1770 -1.7 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2615 -1.7 -1.3 hemolysin-coregulated protein compare
PP_4938 -1.7 -4.1 putative Glycosyl transferase compare
PP_3808 -1.7 -1.3 Antibiotic synthesis protein MbtH compare
PP_4994 -1.7 -1.9 conserved protein of unknown function compare
PP_4271 -1.7 -0.8 conserved protein of unknown function compare
PP_1004 -1.6 -1.8 conserved protein of unknown function compare
PP_1871 -1.6 -2.2 Protease HtpX compare
PP_2027 -1.6 -2.5 conserved exported protein of unknown function compare
PP_5575 -1.6 -1.4 conserved protein of unknown function compare
PP_1217 -1.6 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2309 -1.6 -1.0 conserved protein of unknown function compare
PP_2140 -1.6 -2.1 conserved protein of unknown function compare
PP_1683 -1.6 -1.0 Transcriptional regulator, MarR family compare
PP_2152 -1.5 -1.2 glycerophosphoryl diester phosphodiesterase compare
PP_0339 -1.5 -3.5 Pyruvate dehydrogenase E1 component compare
PP_3110 -1.5 -1.7 protein of unknown function compare
PP_4989 -1.5 -1.8 Protein PilJ compare
PP_4911 -1.5 -2.7 conserved protein of unknown function compare
PP_0888 -1.5 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4054 -1.5 -2.1 conserved protein of unknown function compare
PP_0960 -1.5 -1.9 phospholipid ABC transporter binding protein compare
PP_2217 -1.5 -1.3 enoyl-CoA hydratase compare
PP_2118 -1.5 -2.0 conserved protein of unknown function compare
PP_4171 -1.5 -8.6 conserved exported protein of unknown function compare
PP_5191 -1.5 -1.7 conserved exported protein of unknown function compare
PP_1778 -1.5 -2.3 Lipopolysaccharide ABC export system, permease protein compare
PP_3806 -1.5 -2.1 Hydrolase, isochorismatase family compare
PP_1054 -1.4 -1.0 Type II secretion pathway protein XcpZ compare
PP_0346 -1.4 -4.0 putative Heptose kinase WapQ compare
PP_0794 -1.4 -2.3 1-phosphofructokinase monomer compare
PP_1036 -1.4 -4.2 membrane-bound lytic murein transglycosylase F compare
PP_0120 -1.4 -3.1 putative zinc ABC transporter compare
PP_1122 -1.4 -1.3 OmpA family protein compare
PP_1798 -1.4 -4.3 Outer membrane efflux protein compare
PP_2720 -1.4 -1.1 conserved protein of unknown function compare
PP_0066 -1.4 -3.0 Ribosomal RNA small subunit methyltransferase B compare
PP_0117 -1.4 -3.0 Zn(2+) ABC transporter - permease subunit compare
PP_1647 -1.4 -2.1 conserved protein of unknown function compare
PP_1131 -1.4 -1.1 outer membrane lipoprotein compare
PP_0293 -1.4 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4660 -1.4 -1.4 Transcriptional regulator, LysR family compare
PP_1598 -1.3 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_1427 -1.3 -3.3 RNA polymerase sigma E factor compare
PP_5327 -1.3 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_5597 -1.3 -2.0 conserved protein of unknown function compare
PP_1789 -1.3 -2.2 Hydrolase, haloacid dehalogenase-like family compare
PP_4797 -1.3 -1.3 conserved protein of unknown function compare
PP_1739 -1.3 -1.5 conserved membrane protein of unknown function compare
PP_3768 -1.3 -2.9 putative shikimate 5-dehydrogenase compare
PP_4964 -1.3 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_3505 -1.3 -0.8 conserved protein of unknown function compare
PP_0850 -1.3 -2.5 Dual-specificity RNA methyltransferase RlmN compare
PP_2575 -1.3 -1.2 conserved exported protein of unknown function compare
PP_4515 -1.3 -2.7 Transcriptional regulator, MarR family compare
PP_0855 -1.3 -1.5 conserved protein of unknown function compare
PP_5038 -1.3 -2.0 conserved lipoprotein of unknown function compare
PP_3244 -1.3 -4.1 Magnesium transporter, MgtC family compare
PP_1178 -1.2 -1.4 conserved protein of unknown function compare
PP_2203 -1.2 -1.2 conserved protein of unknown function compare
PP_5227 -1.2 -3.6 diaminopimelate decarboxylase compare
PP_4379 -1.2 -1.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4159 -1.2 -1.9 Potassium-transporting ATPase C chain compare
PP_0787 -1.2 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5313 -1.2 -1.2 DNA-binding protein HU-alpha compare
PP_1637 -1.2 -2.3 Transcriptional regulator, LysR family compare
PP_5557 -1.2 -1.4 protein of unknown function compare
PP_1440 -1.2 -1.8 tRNA (mo5U34)-methyltransferase compare
PP_2196 -1.2 -1.0 agmatinase compare
PP_1702 -1.2 -1.6 Recombination-associated protein RdgC compare
PP_0236 -1.2 -1.4 NAD(P)H-dependent FMN reductase subunit compare
PP_1326 -1.2 -1.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2109 -1.2 -1.6 conserved protein of unknown function compare
PP_2416 -1.2 -1.2 putative Iron ABC transporter, ATP-binding protein compare
PP_t57 -1.2 -1.3 tRNA-Arg compare
PP_1733 -1.2 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_1731 -1.2 -1.6 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2127 -1.2 -1.5 Sensor histidine kinase compare
PP_2046 -1.1 -1.3 Transcriptional regulator, LysR family compare
PP_1860 -1.1 -1.3 Organic hydroperoxide resistance transcriptional regulator compare
PP_1626 -1.1 -3.4 DNA mismatch repair protein MutS compare
PP_5693 -1.1 -2.9 conserved protein of unknown function compare
PP_3346 -1.1 -1.3 Nickel transporter ATP-binding protein compare
PP_1215 -1.1 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_3243 -1.1 -1.5 Acetyltransferase, GNAT family compare
PP_5017 -1.1 -0.8 Sec-independent protein translocase protein TatB compare
PP_5241 -1.1 -1.6 DNA-binding response regulator, LuxR family compare
PP_1918 -1.1 -4.2 septation protein compare
PP_4156 -1.1 -1.3 Transcriptional regulator, LysR family compare
PP_0757 -1.1 -2.8 conserved protein of unknown function compare
PP_4143 -1.1 -2.0 conserved protein of unknown function compare
PP_1835 -1.1 -2.3 conserved protein of unknown function compare
PP_5505 -1.1 -0.6 conserved transmembrane protein of unknown function compare
PP_4937 -1.1 -1.3 toluene tolerance protein compare
PP_0509 -1.1 -1.3 conserved protein of unknown function compare
PP_4144 -1.1 -2.3 Hydroxyacylglutathione hydrolase compare
PP_2145 -1.1 -1.3 beta-N-acetylglucosaminidase compare


Specific Phenotypes

For 7 genes in this experiment