Experiment set42IT019 for Escherichia coli BW25113
LB regrowth after 48hrs
Group: lbMedia: LB, pH=7
Culturing: Keio_ML9a, 50mL bottle, Anaerobic, at 37 (C), shaken=0 rpm
By: Charlotte Brannon/Becca Culver on 21-Oct-20
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Lysine degradation | 2 |
| CBSS-214092.1.peg.3450 | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Lysine degradation
- Peptidoglycan biosynthesis
- Biotin metabolism
- Alkaloid biosynthesis II
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| cadaverine biosynthesis | 1 | 1 | 1 |
| aminopropylcadaverine biosynthesis | 3 | 3 | 1 |
| desferrioxamine E biosynthesis | 5 | 1 | 1 |
| lupanine biosynthesis | 5 | 1 | 1 |
| bisucaberin biosynthesis | 5 | 1 | 1 |
| desferrioxamine B biosynthesis | 5 | 1 | 1 |
| L-lysine degradation X | 6 | 5 | 1 |
| L-lysine degradation I | 7 | 7 | 1 |
| superpathway of polyamine biosynthesis I | 8 | 7 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 16 | 1 |
| superpathway of L-lysine degradation | 43 | 14 | 1 |