| | gene | name | fitness | t score | description | |
|---|
| b1185 | dsbB | +1.5 | 8.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1361 | ydaW | +1.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3860 | dsbA | +1.1 | 10.0 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0630 | lipB | +1.0 | 1.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1831 | proQ | +1.0 | 3.8 | putative solute/DNA competence effector (NCBI) | compare |
| b1882 | cheY | +0.9 | 1.1 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b2934 | cmtB | +0.8 | 0.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2859 | ygeO | +0.8 | 2.0 | hypothetical protein (RefSeq) | compare |
| b0798 | ybiA | +0.7 | 2.1 | hypothetical protein (NCBI) | compare |
| b1205 | ychH | +0.6 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b1195 | ymgE | +0.6 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b4699 | fnrS | +0.6 | 0.9 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1357 | ydaS | +0.5 | 2.1 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2911 | ssrS | +0.5 | 1.9 | 6S regulatory RNA (NCBI) | compare |
| b4701 | sokX | +0.5 | 0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3120 | yhaB | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1530 | marR | +0.5 | 2.2 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b4642 | yoeD | +0.5 | 1.9 | no description | compare |
| b2208 | napF | +0.5 | 2.5 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b4363 | yjjB | +0.5 | 3.3 | conserved inner membrane protein (RefSeq) | compare |
| b1478 | adhP | +0.5 | 2.3 | alcohol dehydrogenase (VIMSS) | compare |
| b1724 | ydiZ | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0464 | acrR | +0.5 | 4.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1742 | b1742 | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1434 | ydcN | +0.5 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1919 | yedO | +0.5 | 1.6 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1739 | osmE | +0.5 | 2.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b4538 | yoeF | +0.5 | 1.1 | hypothetical protein (RefSeq) | compare |
| b4660 | yhiL | +0.4 | 0.3 | no description | compare |
| b2096 | gatY | +0.4 | 2.8 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2433 | b2433 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1558 | cspF | +0.4 | 1.9 | Qin prophage; cold shock protein (NCBI) | compare |
| b0802 | ybiJ | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3624 | rfaZ | +0.4 | 1.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1399 | paaX | +0.4 | 2.9 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b2217 | rcsB | +0.4 | 3.4 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1954 | dsrA | +0.4 | 2.0 | regulatory antisense RNA (NCBI) | compare |
| b2263 | yfbB | +0.4 | 1.4 | predicted peptidase (NCBI) | compare |
| b1348 | lar | +0.4 | 1.4 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2156 | lysP | +0.4 | 3.7 | lysine transporter (NCBI) | compare |
| b1476 | fdnI | +0.4 | 0.7 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b4157 | yjeN | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1847 | yebF | +0.4 | 0.8 | predicted protein (RefSeq) | compare |
| b1753 | ynjA | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b3512 | GadE | +0.4 | 2.6 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0726 | sucA | +0.4 | 2.0 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b0929 | ompF | +0.4 | 2.4 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b0183 | rnhB | +0.4 | 2.5 | ribonuclease HII (NCBI) | compare |
| b1238 | tdk | +0.4 | 2.6 | thymidine kinase (NCBI) | compare |
| b1950 | fliR | +0.4 | 1.7 | flagellar biosynthesis protein R (NCBI) | compare |
| b4431 | rprA | +0.4 | 1.3 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1134 | ymfB | +0.4 | 1.5 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b3181 | greA | +0.4 | 2.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2248 | yfaX | +0.4 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4693 | aaaE | +0.4 | 2.5 | no description | compare |
| b1625 | ydgT | +0.4 | 2.1 | predicted regulator (NCBI) | compare |
| b1414 | ydcF | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b1977 | asnT | +0.4 | 1.6 | tRNA-Asn (NCBI) | compare |
| b1756 | ynjD | +0.4 | 1.8 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0535 | fimZ | +0.4 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4042 | dgkA | +0.4 | 0.2 | diacylglycerol kinase (NCBI) | compare |
| b1419 | ydcA | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b4551 | yheV | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b2481 | hyfA | +0.3 | 1.8 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b1438 | ydcQ | +0.3 | 1.9 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0571 | cusR | +0.3 | 2.2 | DNA-binding response regulator in two-component regulatory system with CusS (NCBI) | compare |
| b4570 | lomR | +0.3 | 1.3 | no description | compare |
| b1058 | yceO | +0.3 | 0.2 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | +0.3 | 0.7 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b4218 | ytfL | +0.3 | 2.6 | predicted inner membrane protein (NCBI) | compare |
| b1463 | nhoA | +0.3 | 2.5 | N-hydroxyarylamine O-acetyltransferase (NCBI) | compare |
| b1408 | b1408 | +0.3 | 2.3 | probable enzyme (VIMSS) | compare |
| b1822 | rrmA | +0.3 | 1.3 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1113 | ycfS | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b1151 | ymfO | +0.3 | 2.0 | e14 prophage; conserved protein (RefSeq) | compare |
| b1418 | cybB | +0.3 | 1.1 | cytochrome b(561) (VIMSS) | compare |
| b1410 | ynbC | +0.3 | 2.6 | predicted hydrolase (NCBI) | compare |
| b2250 | b2250 | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1698 | ydiR | +0.3 | 1.0 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b0880 | cspD | +0.3 | 1.3 | cold shock protein homolog (NCBI) | compare |
| b1442 | ydcU | +0.3 | 1.7 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b4609 | ryfD | +0.3 | 1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b1153 | ymfQ | +0.3 | 1.6 | e14 prophage; conserved protein (NCBI) | compare |
| b3129 | sohA | +0.3 | 2.1 | predicted regulator (NCBI) | compare |
| b1610 | tus | +0.3 | 2.0 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1415 | aldA | +0.3 | 2.4 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b0418 | pgpA | +0.3 | 2.1 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2506 | yfgI | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b3068 | ygjF | +0.3 | 1.8 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b2010 | dacD | +0.3 | 2.1 | penicillin binding protein 6b (VIMSS) | compare |
| b1930 | yedF | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b4387 | ytjB | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3009 | yghB | +0.3 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b3844 | fre | +0.3 | 2.2 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1963 | b1963 | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0388 | aroL | +0.3 | 1.9 | shikimate kinase II (NCBI) | compare |
| b1144 | ymfJ | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b0998 | torD | +0.3 | 0.7 | chaperone protein TorD (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b2743 | pcm | +0.3 | 1.9 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b3630 | rfaP | +0.3 | 2.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b0937 | ssuE | +0.3 | 1.3 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b1161 | ycgX | +0.3 | 0.5 | hypothetical protein (NCBI) | compare |
| b2684 | mprA | +0.3 | 1.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1063 | yceB | +0.3 | 1.7 | predicted lipoprotein (NCBI) | compare |
| b2765 | ygcM | +0.3 | 1.2 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b0840 | deoR | +0.3 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0447 | ybaO | +0.3 | 2.1 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b0942 | ycbU | +0.3 | 2.2 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2095 | gatZ | +0.3 | 2.1 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b1138 | ymfE | +0.3 | 0.8 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b0624 | crcB | +0.3 | 1.8 | camphor resistance protein CrcB (NCBI) | compare |
| b2953 | yggU | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0209 | yafD | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b0730 | mngR | +0.3 | 0.6 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b1179 | ycgL | +0.3 | 0.9 | conserved protein (NCBI) | compare |
| b1553 | ydfP | +0.3 | 0.5 | Qin prophage; conserved protein (NCBI) | compare |
| b1448 | yncA | +0.3 | 1.0 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1684 | sufA | +0.3 | 1.5 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b1955 | yedP | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b4492 | ydbA | +0.3 | 2.3 | no description | compare |
| b0754 | aroG | +0.3 | 2.0 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | compare |
| b1164 | ycgZ | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b0821 | ybiU | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b2488 | hyfH | +0.3 | 1.2 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b1823 | cspC | +0.3 | 0.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b1515 | lsrD | +0.3 | 1.9 | AI2 transporter (NCBI) | compare |
| b1395 | paaH | +0.3 | 1.9 | 3-hydroxybutyryl-CoA dehydrogenase (NCBI) | compare |
| b2284 | nuoF | +0.3 | 1.6 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b2741 | rpoS | +0.3 | 1.7 | RNA polymerase sigma factor (NCBI) | compare |
| b3037 | ygiB | +0.3 | 1.7 | conserved outer membrane protein (RefSeq) | compare |
| b1462 | b1462 | +0.3 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b1768 | ydjB | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2261 | menC | +0.3 | 1.9 | O-succinylbenzoate synthase (NCBI) | compare |
| b0613 | citG | +0.3 | 1.6 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b1936 | intG | +0.3 | 0.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3021 | ygiT | +0.3 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0114 | aceE | +0.3 | 0.6 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b1362 | rzpR | +0.3 | 1.1 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2264 | menD | +0.3 | 2.0 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b2435 | amiA | +0.3 | 1.9 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1427 | rimL | +0.3 | 1.1 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b0193 | yaeF | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1053 | mdtG | +0.3 | 1.5 | predicted drug efflux system (NCBI) | compare |
| b4603 | rseX | +0.3 | 0.3 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0713 | ybgL | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1345 | intR | +0.3 | 2.1 | Rac prophage; integrase (NCBI) | compare |
| b2708 | gutQ | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0803 | ybiI | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b4063 | soxR | +0.3 | 1.5 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b0393 | rdgC | +0.2 | 2.0 | recombination associated protein (NCBI) | compare |
| b2959 | yggL | +0.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0848 | ybjM | +0.2 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b1387 | maoC | +0.2 | 1.8 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1443 | ydcV | +0.2 | 1.3 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b0853 | ybjN | +0.2 | 1.5 | predicted oxidoreductase (NCBI) | compare |
| b1575 | dicB | +0.2 | 0.7 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4596 | yciZ | +0.2 | 0.5 | hypothetical protein (RefSeq) | compare |
| b1765 | ydjA | +0.2 | 0.4 | predicted oxidoreductase (NCBI) | compare |
| b2193 | narP | +0.2 | 1.7 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b2587 | kgtP | +0.2 | 1.5 | alpha-ketoglutarate transporter (NCBI) | compare |
| b3136 | agaS | +0.2 | 1.5 | tagatose-6-phosphate ketose/aldose isomerase (NCBI) | compare |
| b2510 | b2510 | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2565 | recO | +0.2 | 1.3 | DNA repair protein RecO (NCBI) | compare |
| b1527 | yneK | +0.2 | 0.9 | hypothetical protein (NCBI) | compare |
| b4002 | yjaI | +0.2 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2876 | b2876 | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1411 | ynbD | +0.2 | 1.3 | predicted phosphatase, inner membrane protein (NCBI) | compare |
| b1000 | cbpA | +0.2 | 1.7 | curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK (NCBI) | compare |
| b2500 | purN | +0.2 | 1.8 | phosphoribosylglycinamide formyltransferase (NCBI) | compare |
| b3100 | yqjK | +0.2 | 1.4 | hypothetical protein (NCBI) | compare |
| b3623 | rfaK | +0.2 | 0.8 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b1421 | trg | +0.2 | 1.2 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b4367 | fhuF | +0.2 | 1.8 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b3752 | rbsK | +0.2 | 2.1 | ribokinase (NCBI) | compare |
| b2200 | ccmB | +0.2 | 1.4 | heme exporter subunit (NCBI) | compare |
| b1841 | yobA | +0.2 | 0.7 | hypothetical protein (NCBI) | compare |
| b4550 | yhdL | +0.2 | 1.4 | hypothetical protein (NCBI) | compare |
| b3761 | trpT | +0.2 | 0.8 | tRNA-Trp (NCBI) | compare |
| b0618 | citC | +0.2 | 1.8 | citrate lyase synthetase (citrate (pro-3S)-lyase ligase (VIMSS) | compare |
| b0228 | yafM | +0.2 | 1.4 | hypothetical protein (NCBI) | compare |
| b0481 | ybaK | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b4618 | tisB | +0.2 | 1.3 | lexA-regulated toxic peptide (RefSeq) | compare |
| b0323 | yahI | +0.2 | 1.4 | predicted carbamate kinase-like protein (NCBI) | compare |
| b2555 | yfhG | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b3153 | yhbO | +0.2 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3725 | pstB | +0.2 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b4543 | ypaA | +0.2 | 0.9 | predicted protein (NCBI) | compare |
| b2759 | ygcK | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b4411 | ecnB | +0.2 | 1.4 | entericidin B membrane lipoprotein (NCBI) | compare |
| b0456 | ybaA | +0.2 | 0.9 | hypothetical protein (NCBI) | compare |
| b3361 | fic | +0.2 | 1.3 | stationary-phase protein, cell division (NCBI) | compare |
| b0442 | ybaV | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b2094 | gatA | +0.2 | 1.7 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0933 | ssuB | +0.2 | 1.4 | alkanesulfonate transporter subunit (NCBI) | compare |