| | gene | name | fitness | t score | description | |
|---|
| b2934 | cmtB | +1.5 | 1.3 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1185 | dsbB | +1.4 | 7.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b4603 | rseX | +1.0 | 1.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3860 | dsbA | +0.9 | 8.0 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2846 | yqeH | +0.9 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1831 | proQ | +0.9 | 3.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1476 | fdnI | +0.8 | 1.5 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0630 | lipB | +0.8 | 1.5 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1765 | ydjA | +0.8 | 1.4 | predicted oxidoreductase (NCBI) | compare |
| b2616 | recN | +0.6 | 5.2 | recombination and repair protein (NCBI) | compare |
| b4480 | hdfR | +0.6 | 4.4 | transcriptional regulator HdfR (NCBI) | compare |
| b1205 | ychH | +0.6 | 2.4 | predicted inner membrane protein (NCBI) | compare |
| b1143 | ymfI | +0.6 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4128 | yjdK | +0.6 | 0.6 | hypothetical protein (NCBI) | compare |
| b4538 | yoeF | +0.6 | 1.8 | hypothetical protein (RefSeq) | compare |
| b3021 | ygiT | +0.6 | 2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2859 | ygeO | +0.6 | 1.8 | hypothetical protein (RefSeq) | compare |
| b2156 | lysP | +0.6 | 5.0 | lysine transporter (NCBI) | compare |
| b0798 | ybiA | +0.6 | 1.9 | hypothetical protein (NCBI) | compare |
| b1357 | ydaS | +0.5 | 2.0 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0730 | mngR | +0.5 | 1.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3181 | greA | +0.5 | 3.6 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3764 | yifE | +0.5 | 3.5 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3250 | mreC | +0.5 | 2.1 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b0542 | renD | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0439 | lon | +0.5 | 2.5 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0617 | citD | +0.5 | 1.9 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b3889 | yiiE | +0.5 | 2.2 | predicted transcriptional regulator (RefSeq) | compare |
| b0802 | ybiJ | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b4551 | yheV | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b1753 | ynjA | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1954 | dsrA | +0.5 | 2.0 | regulatory antisense RNA (NCBI) | compare |
| b4460 | araH | +0.5 | 2.0 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b2741 | rpoS | +0.5 | 3.4 | RNA polymerase sigma factor (NCBI) | compare |
| b2217 | rcsB | +0.5 | 3.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b4042 | dgkA | +0.5 | 0.3 | diacylglycerol kinase (NCBI) | compare |
| b2935 | tktA | +0.5 | 1.1 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1823 | cspC | +0.5 | 1.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 3.4 | hypothetical protein (NCBI) | compare |
| b2587 | kgtP | +0.4 | 3.2 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1195 | ymgE | +0.4 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b1553 | ydfP | +0.4 | 0.8 | Qin prophage; conserved protein (NCBI) | compare |
| b2673 | nrdH | +0.4 | 2.1 | glutaredoxin-like protein (NCBI) | compare |
| b3260 | dusB | +0.4 | 3.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b4519 | icdC | +0.4 | 2.1 | no description | compare |
| b3504 | yhiS | +0.4 | 0.4 | hypothetical protein (RefSeq) | compare |
| b2510 | b2510 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3961 | oxyR | +0.4 | 3.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4239 | treC | +0.4 | 0.8 | trehalose-6-P hydrolase (NCBI) | compare |
| b2684 | mprA | +0.4 | 2.5 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3512 | GadE | +0.4 | 2.6 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0183 | rnhB | +0.4 | 2.2 | ribonuclease HII (NCBI) | compare |
| b4045 | yjbJ | +0.4 | 1.8 | predicted stress response protein (NCBI) | compare |
| b2208 | napF | +0.4 | 2.1 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b0933 | ssuB | +0.4 | 1.7 | alkanesulfonate transporter subunit (NCBI) | compare |
| b1502 | ydeQ | +0.4 | 1.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1058 | yceO | +0.4 | 0.2 | hypothetical protein (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.6 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b1724 | ydiZ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b4676 | yoaK | +0.4 | 0.4 | expressed protein (RefSeq) | compare |
| b3236 | mdh | +0.4 | 3.1 | malate dehydrogenase (NCBI) | compare |
| b1144 | ymfJ | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2617 | smpA | +0.4 | 1.4 | small membrane protein A (VIMSS) | compare |
| b0623 | cspE | +0.4 | 1.2 | cold shock protein E (NCBI) | compare |
| b1427 | rimL | +0.3 | 1.5 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b3259 | prmA | +0.3 | 2.6 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b1742 | b1742 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1573 | ydfC | +0.3 | 1.0 | Qin prophage; predicted protein (RefSeq) | compare |
| b0247 | ykfG | +0.3 | 1.0 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b0819 | ybiS | +0.3 | 2.8 | hypothetical protein (NCBI) | compare |
| b2279 | nuoK | +0.3 | 1.2 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1581 | rspA | +0.3 | 1.0 | predicted dehydratase (NCBI) | compare |
| b4389 | radA | +0.3 | 2.7 | predicted repair protein (NCBI) | compare |
| b2645 | yfjZ | +0.3 | 1.9 | CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b2212 | alkB | +0.3 | 1.7 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b1421 | trg | +0.3 | 2.4 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1387 | maoC | +0.3 | 2.1 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1351 | racC | +0.3 | 0.3 | Rac prophage; predicted protein (NCBI) | compare |
| b1438 | ydcQ | +0.3 | 1.9 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1134 | ymfB | +0.3 | 1.4 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1625 | ydgT | +0.3 | 2.1 | predicted regulator (NCBI) | compare |
| b2535 | csiE | +0.3 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b0388 | aroL | +0.3 | 2.1 | shikimate kinase II (NCBI) | compare |
| b0521 | ybcF | +0.3 | 2.2 | predicted carbamate kinase (NCBI) | compare |
| b4431 | rprA | +0.3 | 1.2 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b4492 | ydbA | +0.3 | 2.5 | no description | compare |
| b1790 | yeaM | +0.3 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4646 | yrdE | +0.3 | 1.4 | no description | compare |
| b1478 | adhP | +0.3 | 1.9 | alcohol dehydrogenase (VIMSS) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1462 | b1462 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0613 | citG | +0.3 | 1.8 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b2456 | cchB | +0.3 | 1.5 | predicted carboxysome structural protein, ethanolamine utilization protein (NCBI) | compare |
| b1930 | yedF | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b4171 | miaA | +0.3 | 1.3 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0226 | dinJ | +0.3 | 1.6 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b4234 | yjgA | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1339 | abgR | +0.3 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0888 | trxB | +0.3 | 1.2 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b1858 | znuC | +0.3 | 2.3 | high-affinity zinc transporter ATPase (NCBI) | compare |
| b4571 | wbbL | +0.3 | 1.2 | no description | compare |
| b1709 | btuD | +0.3 | 0.5 | vitamin B12-transporter ATPase (NCBI) | compare |
| b4481 | rffT | +0.3 | 2.0 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1408 | b1408 | +0.3 | 1.8 | probable enzyme (VIMSS) | compare |
| b1077 | flgF | +0.3 | 2.4 | flagellar component of cell-proximal portion of basal-body rod (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b1179 | ycgL | +0.3 | 1.2 | conserved protein (NCBI) | compare |
| b1848 | yebG | +0.3 | 0.8 | conserved protein regulated by LexA (NCBI) | compare |
| b1977 | asnT | +0.3 | 1.4 | tRNA-Asn (NCBI) | compare |
| b0991 | ymcE | +0.3 | 1.9 | cold shock gene (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.9 | conserved inner membrane protein (RefSeq) | compare |
| b2572 | rseA | +0.3 | 2.1 | anti-sigma factor (NCBI) | compare |
| b2782 | chpA | +0.3 | 1.5 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b0393 | rdgC | +0.3 | 2.2 | recombination associated protein (NCBI) | compare |
| b2622 | intA | +0.3 | 2.0 | CP4-57 prophage; integrase (NCBI) | compare |
| b1081 | flgJ | +0.3 | 1.9 | flagellar biosynthesis protein FlgJ (NCBI) | compare |
| b0218 | yafU | +0.3 | 1.0 | predicted inner membrane protein (RefSeq) | compare |
| b4585 | sroB | +0.3 | 0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b1217 | chaB | +0.3 | 1.0 | cation transport regulator (NCBI) | compare |
| b1238 | tdk | +0.3 | 1.7 | thymidine kinase (NCBI) | compare |
| b1233 | ychJ | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3627 | rfaI | +0.3 | 2.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2435 | amiA | +0.3 | 1.9 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1936 | intG | +0.3 | 0.5 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b3875 | ompL | +0.3 | 1.2 | predicted outer membrane porin L (NCBI) | compare |
| b2096 | gatY | +0.3 | 1.7 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b4596 | yciZ | +0.3 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1113 | ycfS | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3787 | rffD | +0.3 | 2.2 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3462 | ftsX | +0.3 | 1.7 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0108 | ppdD | +0.3 | 1.4 | predicted major pilin subunit (NCBI) | compare |
| b1053 | mdtG | +0.3 | 1.5 | predicted drug efflux system (NCBI) | compare |
| b1399 | paaX | +0.3 | 1.3 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b3264 | envR | +0.3 | 1.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1811 | yoaH | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4387 | ytjB | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4376 | osmY | +0.3 | 1.3 | periplasmic protein (NCBI) | compare |
| b4280 | yjhC | +0.3 | 1.9 | putative dehydrogenase (VIMSS) | compare |
| b4515 | ybgT | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b1365 | ynaK | +0.3 | 1.9 | Rac prophage; conserved protein (NCBI) | compare |
| b1849 | purT | +0.2 | 1.6 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b2911 | ssrS | +0.2 | 0.8 | 6S regulatory RNA (NCBI) | compare |
| b2792 | yqcC | +0.2 | 0.8 | hypothetical protein (NCBI) | compare |
| b4218 | ytfL | +0.2 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b2486 | hyfF | +0.2 | 1.8 | NADH dehydrogenase subunit N (NCBI) | compare |
| b3207 | yrbL | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b1729 | ydjN | +0.2 | 1.4 | predicted transporter (NCBI) | compare |
| b3206 | npr | +0.2 | 1.9 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1610 | tus | +0.2 | 1.4 | DNA replication terminus site-binding protein (NCBI) | compare |
| b0101 | yacG | +0.2 | 0.7 | zinc-binding protein (NCBI) | compare |
| b0548 | ninE | +0.2 | 1.2 | DLP12 prophage; conserved protein (NCBI) | compare |
| b4686 | yshB | +0.2 | 1.3 | expressed protein (RefSeq) | compare |
| b3786 | rffE | +0.2 | 2.1 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b2250 | b2250 | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4388 | serB | +0.2 | 2.0 | 3-phosphoserine phosphatase (NCBI) | compare |
| b3293 | yhdN | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b4527 | b1354 | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1961 | dcm | +0.2 | 0.5 | DNA cytosine methylase (NCBI) | compare |
| b2633 | yfjQ | +0.2 | 1.9 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2261 | menC | +0.2 | 1.7 | O-succinylbenzoate synthase (NCBI) | compare |
| b3120 | yhaB | +0.2 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b1434 | ydcN | +0.2 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1763 | topB | +0.2 | 1.5 | DNA topoisomerase III (NCBI) | compare |
| b1847 | yebF | +0.2 | 0.5 | predicted protein (RefSeq) | compare |
| b1919 | yedO | +0.2 | 0.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b4532 | yncN | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1959 | yedA | +0.2 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b4692 | oweE | +0.2 | 1.1 | no description | compare |
| b4699 | fnrS | +0.2 | 0.4 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1784 | yeaH | +0.2 | 1.7 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | compare |
| b2993 | hybD | +0.2 | 1.4 | predicted maturation element for hydrogenase 2 (NCBI) | compare |
| b1524 | yneH | +0.2 | 0.4 | predicted glutaminase (NCBI) | compare |
| b2743 | pcm | +0.2 | 1.3 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b2193 | narP | +0.2 | 1.5 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b0545 | ybcL | +0.2 | 1.8 | DLP12 prophage; predicted kinase inhibitor (NCBI) | compare |
| b1453 | ansP | +0.2 | 1.6 | L-asparagine permease (VIMSS) | compare |
| b3156 | yhbS | +0.2 | 1.9 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3037 | ygiB | +0.2 | 1.4 | conserved outer membrane protein (RefSeq) | compare |
| b1739 | osmE | +0.2 | 1.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1390 | paaC | +0.2 | 1.5 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1035 | ycdY | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | +0.2 | 1.0 | cytochrome b(561) (VIMSS) | compare |
| b1414 | ydcF | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b2682 | ygaZ | +0.2 | 1.4 | predicted transporter (NCBI) | compare |
| b0848 | ybjM | +0.2 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b2488 | hyfH | +0.2 | 1.0 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b2103 | thiD | +0.2 | 1.5 | phosphomethylpyrimidine kinase (NCBI) | compare |
| b4687 | shoB | +0.2 | 1.1 | toxic membrane protein (RefSeq) | compare |
| b3844 | fre | +0.2 | 1.3 | NAD(P)H-flavin reductase (NCBI) | compare |
| b4369 | leuP | +0.2 | 1.2 | tRNA-Leu (NCBI) | compare |
| b1415 | aldA | +0.2 | 1.4 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b2368 | emrK | +0.2 | 1.7 | EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI) | compare |
| b2281 | nuoI | +0.2 | 0.9 | NADH dehydrogenase subunit I (NCBI) | compare |
| b3794 | rffM | +0.2 | 1.8 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b3507 | dctR | +0.2 | 2.0 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b0957 | ompA | +0.2 | 1.1 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0660 | ybeZ | +0.2 | 1.5 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b4325 | yjiC | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |