| | gene | name | fitness | t score | description | |
|---|
| b3979 | thrT | +1.5 | 0.5 | tRNA-Thr (NCBI) | compare |
| b1185 | dsbB | +1.3 | 8.1 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1361 | ydaW | +1.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3860 | dsbA | +1.1 | 8.9 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b4699 | fnrS | +0.9 | 1.5 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b0630 | lipB | +0.9 | 1.6 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1831 | proQ | +0.8 | 3.4 | putative solute/DNA competence effector (NCBI) | compare |
| b0798 | ybiA | +0.8 | 2.4 | hypothetical protein (NCBI) | compare |
| b1332 | ynaJ | +0.8 | 0.6 | predicted inner membrane protein (NCBI) | compare |
| b1205 | ychH | +0.7 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b0730 | mngR | +0.7 | 1.5 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4538 | yoeF | +0.7 | 2.1 | hypothetical protein (RefSeq) | compare |
| b1195 | ymgE | +0.6 | 2.4 | predicted inner membrane protein (NCBI) | compare |
| b4505 | insX | +0.6 | 1.9 | predicted IS protein (RefSeq) | compare |
| b3181 | greA | +0.6 | 4.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1357 | ydaS | +0.6 | 2.2 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1742 | b1742 | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1085 | b1085 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4642 | yoeD | +0.5 | 1.3 | no description | compare |
| b0929 | ompF | +0.5 | 3.6 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b0542 | renD | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1418 | cybB | +0.5 | 1.3 | cytochrome b(561) (VIMSS) | compare |
| b3027 | ygiZ | +0.5 | 0.3 | conserved inner membrane protein (NCBI) | compare |
| b2156 | lysP | +0.5 | 4.2 | lysine transporter (NCBI) | compare |
| b1480 | sra | +0.5 | 1.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b4218 | ytfL | +0.5 | 3.7 | predicted inner membrane protein (NCBI) | compare |
| b1408 | b1408 | +0.4 | 3.0 | probable enzyme (VIMSS) | compare |
| b3512 | GadE | +0.4 | 2.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1709 | btuD | +0.4 | 0.9 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2051 | wcaH | +0.4 | 1.7 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b0464 | acrR | +0.4 | 3.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1238 | tdk | +0.4 | 3.1 | thymidine kinase (NCBI) | compare |
| b1476 | fdnI | +0.4 | 0.7 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4596 | yciZ | +0.4 | 1.3 | hypothetical protein (RefSeq) | compare |
| b1179 | ycgL | +0.4 | 1.7 | conserved protein (NCBI) | compare |
| b4603 | rseX | +0.4 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b4345 | mcrC | +0.4 | 0.8 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1152 | ymfP | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0388 | aroL | +0.4 | 2.4 | shikimate kinase II (NCBI) | compare |
| b0218 | yafU | +0.4 | 1.9 | predicted inner membrane protein (RefSeq) | compare |
| b1448 | yncA | +0.4 | 1.2 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1462 | b1462 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1382 | ynbE | +0.4 | 1.2 | predicted lipoprotein (NCBI) | compare |
| b2433 | b2433 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2435 | amiA | +0.4 | 3.1 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1461 | ydcE | +0.4 | 2.0 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b0521 | ybcF | +0.4 | 1.9 | predicted carbamate kinase (NCBI) | compare |
| b4387 | ytjB | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b3120 | yhaB | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0852 | rimK | +0.4 | 2.3 | ribosomal protein S6 modification protein (NCBI) | compare |
| b1882 | cheY | +0.4 | 0.4 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1610 | tus | +0.4 | 1.8 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1753 | ynjA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1442 | ydcU | +0.4 | 2.2 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1342 | ydaN | +0.4 | 2.3 | zinc transporter (NCBI) | compare |
| b2708 | gutQ | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1387 | maoC | +0.4 | 2.2 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b4551 | yheV | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b3129 | sohA | +0.3 | 1.7 | predicted regulator (NCBI) | compare |
| b1954 | dsrA | +0.3 | 0.9 | regulatory antisense RNA (NCBI) | compare |
| b4640 | yoeG | +0.3 | 1.3 | no description | compare |
| b2935 | tktA | +0.3 | 0.8 | transketolase 1, thiamin-binding (NCBI) | compare |
| b2217 | rcsB | +0.3 | 2.5 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1151 | ymfO | +0.3 | 1.7 | e14 prophage; conserved protein (RefSeq) | compare |
| b3889 | yiiE | +0.3 | 1.4 | predicted transcriptional regulator (RefSeq) | compare |
| b3026 | qseC | +0.3 | 1.4 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1811 | yoaH | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0183 | rnhB | +0.3 | 2.3 | ribonuclease HII (NCBI) | compare |
| b2915 | yqfE | +0.3 | 2.2 | hypothetical protein (RefSeq) | compare |
| b1421 | trg | +0.3 | 2.4 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1739 | osmE | +0.3 | 1.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b2504 | yfgG | +0.3 | 0.7 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b0418 | pgpA | +0.3 | 2.4 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b1858 | znuC | +0.3 | 2.5 | high-affinity zinc transporter ATPase (NCBI) | compare |
| b4492 | ydbA | +0.3 | 2.7 | no description | compare |
| b1440 | ydcS | +0.3 | 2.5 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1153 | ymfQ | +0.3 | 2.0 | e14 prophage; conserved protein (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1415 | aldA | +0.3 | 2.1 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b0393 | rdgC | +0.3 | 2.3 | recombination associated protein (NCBI) | compare |
| b1530 | marR | +0.3 | 1.1 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b2399 | yfeD | +0.3 | 1.8 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b4381 | deoC | +0.3 | 2.0 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b0645 | ybeR | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b1161 | ycgX | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b1380 | ldhA | +0.3 | 1.6 | D-lactate dehydrogenase (NCBI) | compare |
| b0848 | ybjM | +0.3 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b1410 | ynbC | +0.3 | 2.2 | predicted hydrolase (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b4686 | yshB | +0.3 | 1.2 | expressed protein (RefSeq) | compare |
| b1426 | ydcH | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1388 | paaA | +0.3 | 2.1 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b0821 | ybiU | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1467 | narY | +0.3 | 1.8 | nitrate reductase 2 (NRZ), beta subunit (NCBI) | compare |
| b2250 | b2250 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0696 | kdpC | +0.3 | 1.0 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1453 | ansP | +0.3 | 1.7 | L-asparagine permease (VIMSS) | compare |
| b1411 | ynbD | +0.3 | 2.2 | predicted phosphatase, inner membrane protein (NCBI) | compare |
| b2445 | yffN | +0.3 | 1.2 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2684 | mprA | +0.3 | 1.7 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3082 | ygjM | +0.3 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1463 | nhoA | +0.3 | 2.2 | N-hydroxyarylamine O-acetyltransferase (NCBI) | compare |
| b1143 | ymfI | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2096 | gatY | +0.3 | 2.1 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b4146 | yjeK | +0.3 | 0.3 | predicted lysine aminomutase (NCBI) | compare |
| b2587 | kgtP | +0.3 | 1.8 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1427 | rimL | +0.3 | 1.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b0209 | yafD | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b3555 | yiaG | +0.3 | 1.3 | predicted transcriptional regulator (NCBI) | compare |
| b2846 | yqeH | +0.3 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b1930 | yedF | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1439 | ydcR | +0.3 | 1.7 | fused predicted DNA-binding transcriptional regulator/predicted amino transferase (NCBI) | compare |
| b1625 | ydgT | +0.3 | 1.9 | predicted regulator (NCBI) | compare |
| b4376 | osmY | +0.3 | 1.9 | periplasmic protein (NCBI) | compare |
| b1764 | selD | +0.3 | 1.6 | selenophosphate synthetase (NCBI) | compare |
| b2010 | dacD | +0.3 | 1.9 | penicillin binding protein 6b (VIMSS) | compare |
| b2356 | yfdM | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2859 | ygeO | +0.3 | 0.7 | hypothetical protein (RefSeq) | compare |
| b0846 | ybjK | +0.3 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3875 | ompL | +0.3 | 1.2 | predicted outer membrane porin L (NCBI) | compare |
| b2672 | ygaM | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4484 | cpxP | +0.3 | 2.1 | periplasmic protein combats stress (NCBI) | compare |
| b1824 | yobF | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b3100 | yqjK | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | +0.3 | 0.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3037 | ygiB | +0.3 | 1.8 | conserved outer membrane protein (RefSeq) | compare |
| b3630 | rfaP | +0.3 | 2.2 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2258 | b2258 | +0.3 | 0.7 | putative transport/receptor protein (VIMSS) | compare |
| b1154 | ycfK | +0.3 | 2.0 | e14 prophage; predicted protein (NCBI) | compare |
| b0600 | ybdL | +0.3 | 2.0 | putative aminotransferase (NCBI) | compare |
| b2622 | intA | +0.3 | 1.8 | CP4-57 prophage; integrase (NCBI) | compare |
| b1768 | ydjB | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2682 | ygaZ | +0.2 | 1.5 | predicted transporter (NCBI) | compare |
| b1515 | lsrD | +0.2 | 1.2 | AI2 transporter (NCBI) | compare |
| b2023 | hisH | +0.2 | 1.6 | imidazole glycerol phosphate synthase subunit HisH (NCBI) | compare |
| b4363 | yjjB | +0.2 | 1.4 | conserved inner membrane protein (RefSeq) | compare |
| b2052 | fcl | +0.2 | 1.5 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b1977 | asnT | +0.2 | 1.0 | tRNA-Asn (NCBI) | compare |
| b2398 | yfeC | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2208 | napF | +0.2 | 1.3 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b2209 | eco | +0.2 | 0.8 | ecotin precursor (NCBI) | compare |
| b1399 | paaX | +0.2 | 1.7 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b1038 | csgF | +0.2 | 1.0 | predicted transport protein (NCBI) | compare |
| b4529 | ydbJ | +0.2 | 0.5 | hypothetical protein (NCBI) | compare |
| b3236 | mdh | +0.2 | 2.0 | malate dehydrogenase (NCBI) | compare |
| b2940 | yqgC | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b1838 | pphA | +0.2 | 1.7 | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (VIMSS) | compare |
| b0617 | citD | +0.2 | 0.9 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1414 | ydcF | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b0269 | yagF | +0.2 | 1.8 | CP4-6 prophage; predicted dehydratase (NCBI) | compare |
| b2741 | rpoS | +0.2 | 1.5 | RNA polymerase sigma factor (NCBI) | compare |
| b1349 | recT | +0.2 | 1.9 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1917 | yecC | +0.2 | 1.5 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2743 | pcm | +0.2 | 1.6 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b2419 | yfeK | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b1394 | paaG | +0.2 | 1.0 | enoyl-CoA hydratase (NCBI) | compare |
| b0407 | yajC | +0.2 | 0.6 | preprotein translocase subunit YajC (NCBI) | compare |
| b1487 | ddpA | +0.2 | 1.7 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b2294 | b2294 | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3481 | nikR | +0.2 | 1.6 | nickel responsive regulator (NCBI) | compare |
| b3775 | ppiC | +0.2 | 1.6 | peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) | compare |
| b1434 | ydcN | +0.2 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2947 | gshB | +0.2 | 1.3 | glutathione synthetase (NCBI) | compare |
| b2221 | atoD | +0.2 | 1.3 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b3625 | rfaY | +0.2 | 1.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1731 | cedA | +0.2 | 1.3 | cell division modulator (RefSeq) | compare |
| b1115 | ycfT | +0.2 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b1044 | ymdA | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b2264 | menD | +0.2 | 1.9 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b1604 | ydgH | +0.2 | 1.2 | hypothetical protein (NCBI) | compare |
| b3725 | pstB | +0.2 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b4573 | insZ | +0.2 | 1.3 | no description | compare |
| b3248 | yhdE | +0.2 | 1.8 | Maf-like protein (NCBI) | compare |
| b3021 | ygiT | +0.2 | 0.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1444 | ydcW | +0.2 | 1.5 | medium chain aldehyde dehydrogenase (NCBI) | compare |
| b1407 | ydbD | +0.2 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4158 | yjeO | +0.2 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b4157 | yjeN | +0.2 | 0.6 | hypothetical protein (NCBI) | compare |
| b0933 | ssuB | +0.2 | 1.3 | alkanesulfonate transporter subunit (NCBI) | compare |
| b3263 | yhdU | +0.2 | 1.7 | predicted membrane protein (NCBI) | compare |
| b4325 | yjiC | +0.2 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4431 | rprA | +0.2 | 0.8 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b2876 | b2876 | +0.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1676 | pykF | +0.2 | 1.1 | pyruvate kinase (NCBI) | compare |
| b3631 | rfaG | +0.2 | 2.0 | glucosyltransferase I (NCBI) | compare |
| b2782 | chpA | +0.2 | 1.5 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b1707 | ydiV | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b1469 | narU | +0.2 | 1.4 | nitrate/nitrite transporter (NCBI) | compare |
| b1524 | yneH | +0.2 | 0.4 | predicted glutaminase (NCBI) | compare |
| b1706 | ydiU | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b3698 | yidB | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1659 | ydhB | +0.2 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1138 | ymfE | +0.2 | 0.6 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b3727 | pstC | +0.2 | 1.6 | phosphate transporter subunit (NCBI) | compare |
| b4693 | aaaE | +0.2 | 1.5 | no description | compare |
| b1520 | b1520 | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1424 | mdoD | +0.2 | 1.5 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |