Experiment set42IT005 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most important genes:

  gene name fitness t score description  
PP_0164 -2.8 -5.9 conserved protein of unknown function compare
PP_0833 -2.4 -3.2 queuine tRNA-ribosyltransferase compare
PP_0719 -2.4 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1186 -2.2 -2.2 two component system DNA-binding transcriptional dual regulator compare
PP_4700 -2.1 -3.5 pantothenate synthetase compare
PP_1493 -1.8 -4.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0393 -1.7 -3.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1898 -1.7 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_0691 -1.6 -1.8 Glutamate 5-kinase compare
PP_4964 -1.6 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1783 -1.5 -1.7 dTDP-glucose pyrophosphorylase compare
PP_1428 -1.4 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_1733 -1.4 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1099 -1.4 -3.2 Cold shock protein CapB compare
PP_0218 -1.3 -5.7 Sensory box protein compare
PP_0914 -1.3 -8.2 GGDEF domain protein compare
PP_4952 -1.2 -2.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1654 -1.2 -1.4 cysteine synthase B compare
PP_1664 -1.2 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4902 -1.2 -2.5 Oligoribonuclease compare
PP_1734 -1.2 -2.4 Probable septum site-determining protein MinC compare
PP_0339 -1.2 -2.6 Pyruvate dehydrogenase E1 component compare
PP_5582 -1.1 -1.5 conserved protein of unknown function compare
PP_2087 -1.1 -2.0 CmpX protein compare
PP_4342 -1.1 -3.1 flagellar synthesis regulator, putative ATPase compare
PP_5331 -1.1 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_1216 -1.0 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0888 -1.0 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_2999 -1.0 -1.7 Glyoxalase family protein compare
PP_4824 -1.0 -4.2 Sensor histidine kinase/response regulator compare
PP_4356 -1.0 -3.0 Flagellar protein FliO compare
PP_4358 -1.0 -5.6 flagellar synthesis, switching and energizing component compare
PP_4368 -0.9 -3.8 flagellar motor switch protein compare
PP_4353 -0.9 -4.9 Flagellar biosynthetic protein fliR compare
PP_1468 -0.9 -1.3 Tyrosine recombinase XerD compare
PP_1344 -0.9 -2.0 conserved protein of unknown function compare
PP_3035 -0.9 -2.4 conserved protein of unknown function compare
PP_4121 -0.9 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4131 -0.9 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_4120 -0.9 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_2718 -0.9 -2.5 arsenic resistance transcriptional regulator compare
PP_5748 -0.9 -1.4 cytochrome c heme lyase subunit compare
PP_4989 -0.9 -2.5 Protein PilJ compare
PP_3105 -0.8 -1.3 conserved membrane protein of unknown function compare
PP_1404 -0.8 -2.6 conserved protein of unknown function compare
PP_4354 -0.8 -3.2 flagellar export apparatus subunit compare
PP_0127 -0.8 -1.6 Thiol:disulfide interchange protein compare
PP_0846 -0.8 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_0406 -0.8 -2.3 Nucleotidyltransferase family protein compare
PP_4373 -0.8 -6.8 Transcriptional regulator FleQ compare
PP_0065 -0.8 -2.5 NAD-binding component of TrK potassium transporter compare
PP_4365 -0.8 -3.4 Flagellar protein FliJ compare
PP_2550 -0.8 -2.1 putative transcriptional regulatory protein compare
PP_4394 -0.8 -3.7 flagella basal body P-ring formation protein compare
PP_4385 -0.7 -3.7 flagellar basal-body rod protein FlgG compare
PP_3198 -0.7 -2.1 Ferredoxin, 2Fe-2S compare
PP_4341 -0.7 -4.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5022 -0.7 -1.8 Glutamine transport ATP-binding protein GlnQ compare
PP_4384 -0.7 -4.6 Flagellar L-ring protein compare
PP_5491 -0.7 -1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_0886 -0.7 -3.4 conserved exported protein of unknown function compare
PP_5473 -0.7 -2.1 putative transcriptional regulator, LuxR family compare
PP_4814 -0.7 -2.4 ATP-dependent protease La domain protein compare
PP_4396 -0.7 -2.2 conserved protein of unknown function compare
PP_1204 -0.7 -2.6 putative Lipoprotein compare
PP_4344 -0.7 -5.1 flagellar export pore protein compare
PP_0834 -0.7 -0.8 Sec translocation complex subunit YajC compare
PP_4370 -0.7 -1.8 Flagellar hook-basal body complex protein FliE compare
PP_1232 -0.7 -2.3 conserved exported protein of unknown function compare
PP_4379 -0.7 -2.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4337 -0.7 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0801 -0.7 -1.3 conserved exported protein of unknown function compare
PP_4383 -0.6 -3.2 Flagellar P-ring protein compare
PP_5654 -0.6 -1.1 putative phosphotriesterase compare
PP_4366 -0.6 -4.8 flagellum-specific ATP synthase compare
PP_4519 -0.6 -4.9 Agglutination protein compare
PP_2414 -0.6 -0.9 conserved exported protein of unknown function compare
PP_4905 -0.6 -2.5 Flagellar motor rotation protein compare
PP_1293 -0.6 -1.4 molybdopterin synthase small subunit compare
PP_5216 -0.6 -0.8 exopolyphosphatase compare
PP_2903 -0.6 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1066 -0.6 -2.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4739 -0.6 -2.0 conserved protein of unknown function compare
PP_5058 -0.6 -2.4 Carboxy-terminal-processing protease compare
PP_3359 -0.6 -1.0 putative Hydroxycinnamic acid degradation regulator compare
PP_0025 -0.6 -1.4 hypothetical protein compare
PP_4942 -0.6 -0.9 conserved protein of unknown function compare
PP_4944 -0.6 -1.7 Carbamoyltransferase compare
PP_2434 -0.6 -3.6 conserved protein of unknown function compare
PP_0246 -0.6 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_4389 -0.6 -4.2 Flagellar basal-body rod modification protein FlgD compare
PP_0872 -0.6 -2.6 Peptide chain release factor 3 compare
PP_0513 -0.6 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1825 -0.6 -2.6 conserved exported protein of unknown function compare
PP_1994 -0.6 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_0290 -0.6 -3.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0435 -0.6 -2.8 Peptidase, M23/M37 family compare
PP_1986 -0.6 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_0292 -0.6 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4390 -0.6 -3.1 flagellar basal-body rod protein FlgC compare
PP_3190 -0.6 -1.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4380 -0.6 -4.9 Flagellar hook-associated protein FlgL compare
PP_4504 -0.6 -1.0 conserved exported protein of unknown function compare
PP_3247 -0.6 -2.0 Transporter, bile acid/Na+ symporter family compare
PP_4376 -0.6 -4.4 flagellar filament capping protein compare
PP_0345 -0.6 -2.5 putative Heptose kinase WapP compare
PP_2846 -0.6 -1.8 urease accessory protein compare
PP_1366 -0.6 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_2127 -0.6 -1.8 Sensor histidine kinase compare
PP_1096 -0.6 -1.3 putative electron transport complex protein compare
PP_2060 -0.6 -1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0962 -0.6 -2.0 toluene-tolerance protein compare
PP_4388 -0.5 -4.7 Flagellar hook protein FlgE compare
PP_0293 -0.5 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2302 -0.5 -2.2 DNA-binding, ATP-dependent protease compare
PP_2462 -0.5 -1.6 conserved protein of unknown function compare
PP_1491 -0.5 -2.3 CheW domain protein compare
PP_5552 -0.5 -1.6 conserved protein of unknown function compare
PP_3904 -0.5 -2.5 conserved protein of unknown function compare
PP_4517 -0.5 -1.7 conserved protein of unknown function compare
PP_3730 -0.5 -1.4 Transcriptional regulatory protein AruR compare
PP_3239 -0.5 -1.8 putative cointegrate resolution protein T Tn4652 compare
PP_5597 -0.5 -1.8 conserved protein of unknown function compare
PP_5028 -0.5 -2.1 proline iminopeptidase compare
PP_2631 -0.5 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4593 -0.5 -1.5 conserved protein of unknown function compare
PP_4917 -0.5 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5090 -0.5 -1.6 putative cell division protein compare
PP_5352 -0.5 -3.8 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2633 -0.5 -0.9 conserved protein of unknown function compare
PP_5571 -0.5 -1.0 conserved protein of unknown function compare
PP_2784 -0.5 -1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0640 -0.5 -1.5 conserved protein of unknown function compare
PP_3315 -0.5 -1.7 conserved membrane protein of unknown function compare
PP_2585 -0.5 -2.2 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PP_4520 -0.5 -2.2 conserved protein of unknown function compare
PP_1217 -0.5 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2159 -0.5 -1.4 Copper-binding protein, plastocyanin/azurin family compare
PP_0848 -0.5 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0672 -0.5 -4.5 Sensory box protein compare
PP_5168 -0.5 -2.4 sulfate/thiosulfate import ATP-binding protein compare
PP_5338 -0.5 -1.5 aspartate ammonia-lyase compare
PP_1087 -0.5 -3.0 Outer membrane protein, OmpA family compare
PP_4369 -0.5 -3.5 Flagellar M-ring protein compare
PP_0167 -0.5 -4.4 Toxin secretion ATP-binding protein compare
PP_0725 -0.5 -2.1 conserved hypothetical TPR repeat protein compare
PP_4720 -0.5 -1.6 putative RNA binding protein compare
PP_4124 -0.5 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_1629 -0.5 -2.7 Protein RecA compare
PP_0945 -0.5 -1.9 conserved protein of unknown function compare
PP_4359 -0.5 -3.0 Flagellar protein FliL compare
PP_3307 -0.5 -1.5 conserved protein of unknown function compare
PP_5084 -0.5 -3.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4941 -0.5 -2.2 conserved exported protein of unknown function compare
PP_4555 -0.5 -1.6 conserved protein of unknown function compare
PP_5221 -0.5 -1.9 conserved protein of unknown function, UPF0178 family compare
PP_3496 -0.5 -2.6 Endoribonuclease L-PSP compare
PP_3541 -0.5 -1.1 Transporter, MgtC family compare
PP_0082 -0.5 -2.3 tryptophan synthase alpha chain compare
PP_4367 -0.5 -2.2 Flagellar assembly protein FliH compare
PP_0289 -0.5 -2.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0165 -0.5 -4.0 GGDEF domain protein compare
PP_4381 -0.5 -3.7 Flagellar hook-associated protein FlgK compare
PP_1187 -0.5 -2.3 sensor protein compare
PP_4098 -0.5 -0.8 UvrABC system protein C compare
PP_2417 -0.5 -1.8 putative Iron ABC transporter, permease protein compare
PP_0168 -0.5 -4.4 putative surface adhesion protein compare
PP_0401 -0.5 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_2720 -0.5 -0.9 conserved protein of unknown function compare
PP_3505 -0.5 -1.2 conserved protein of unknown function compare
PP_4361 -0.5 -2.1 Flagellar hook-length control protein FliK compare
PP_4837 -0.5 -1.9 conserved protein of unknown function compare
PP_1374 -0.5 -1.9 conserved protein of unknown function compare
PP_5236 -0.5 -2.9 conserved protein of unknown function compare
PP_1362 -0.5 -1.6 pyruvate kinase II compare
PP_1041 -0.5 -0.9 twin arginine protein export complex subunit compare
PP_4378 -0.5 -3.9 flagellin, filament structural protein compare
PP_2044 -0.5 -1.0 conserved inner membrane protein of unknown function compare
PP_1034 -0.5 -3.2 multicopper oxidase compare
PP_2815 -0.5 -2.1 conserved protein of unknown function compare
PP_t29 -0.5 -1.0 tRNA-Ala compare
PP_1045 -0.5 -1.2 Type II secretion pathway protein XcpP compare
PP_3480 -0.5 -1.6 conserved protein of unknown function compare
PP_4835 -0.4 -1.8 conserved exported protein of unknown function compare
PP_5045 -0.4 -1.8 tRNA sulfurtransferase compare
PP_1062 -0.4 -1.6 MutT/nudix family protein compare
PP_1692 -0.4 -1.1 conserved protein of unknown function compare
PP_2568 -0.4 -0.9 Ring-cleaving dioxygenase compare
PP_1764 -0.4 -1.3 Phosphoglycolate phosphatase 2 compare
PP_3365 -0.4 -0.8 Acetolactate synthase compare
PP_0913 -0.4 -3.0 conserved exported protein of unknown function compare
PP_2217 -0.4 -1.2 enoyl-CoA hydratase compare
PP_5247 -0.4 -2.5 conserved protein of unknown function compare
PP_0166 -0.4 -3.4 HlyD family secretion protein compare
PP_4109 -0.4 -1.2 conserved protein of unknown function compare
PP_0673 -0.4 -0.9 conserved protein of unknown function compare
PP_2848 -0.4 -1.7 urease accessory protein compare
PP_4891 -0.4 -2.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1691 -0.4 -1.8 conserved protein of unknown function compare
PP_t10 -0.4 -0.7 tRNA-Pro compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no phage control experiments