Experiment set42IT005 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +1.3 6.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3519 +0.8 1.5 putative Lipoprotein compare
PP_5453 +0.8 2.0 conserved protein of unknown function compare
PP_5508 +0.8 1.5 conserved protein of unknown function compare
PP_1124 +0.8 3.8 conserved membrane protein of unknown function compare
PP_1568 +0.7 1.7 conserved protein of unknown function compare
PP_1656 +0.7 5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4122 +0.7 1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3408 +0.7 3.2 cobalt transporter subunit A compare
PP_1178 +0.7 3.0 conserved protein of unknown function compare
PP_5093 +0.7 1.8 twitching motility protein compare
PP_4528 +0.7 2.3 conserved protein of unknown function compare
PP_3052 +0.7 1.4 conserved protein of unknown function compare
PP_2581 +0.6 1.5 conserved protein of unknown function compare
PP_5095 +0.6 0.8 pyrroline-5-carboxylate reductase compare
PP_5232 +0.6 3.0 conserved protein of unknown function compare
PP_2073 +0.6 2.5 Acetyltransferase, GNAT family compare
PP_3332 +0.6 2.2 putative cytochrome c-type protein compare
PP_1122 +0.6 0.9 OmpA family protein compare
PP_5313 +0.6 1.6 DNA-binding protein HU-alpha compare
PP_2820 +0.6 1.8 HTH-type transcriptional regulator nfxB compare
PP_2189 +0.6 2.0 conserved protein of unknown function compare
PP_1562 +0.6 2.0 putative Phage terminase, small subunit compare
PP_5167 +0.6 1.9 conserved hypothetical protein compare
PP_2857 +0.6 1.0 conserved exported protein of unknown function compare
PP_5295 +0.6 2.0 conserved protein of unknown function compare
PP_1167 +0.6 3.1 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_3411 +0.6 1.8 conserved protein of unknown function compare
PP_3792 +0.6 2.8 conserved protein of unknown function compare
PP_5007 +0.5 2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_t49 +0.5 2.8 tRNA-Met compare
PP_0126 +0.5 2.3 Cytochrome c4 compare
PP_4296 +0.5 1.7 conserved exported protein of unknown function compare
PP_3043 +0.5 1.6 conserved protein of unknown function compare
PP_4687 +0.5 2.7 Hemin import ATP-binding protein HmuV compare
PP_2695 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_1528 +0.5 0.8 conserved protein of unknown function compare
PP_2880 +0.5 1.8 Transcriptional regulator, TetR family compare
PP_3380 +0.5 2.5 2-ketogluconate utilization repressor compare
PP_1609 +0.5 2.0 conserved protein of unknown function compare
PP_5706 +0.5 1.2 Sec translocation complex - SecG subunit compare
PP_1583 +0.5 2.2 putative Structural protein P5 compare
PP_4953 +0.5 3.1 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_0653 +0.5 1.2 conserved protein of unknown function compare
PP_1164 +0.5 1.4 Transcriptional regulator, LysR family compare
PP_0425 +0.5 2.0 conserved protein of unknown function compare
PP_1190 +0.5 2.1 conserved protein of unknown function compare
PP_1938 +0.5 1.6 conserved protein of unknown function compare
PP_4642 +0.5 0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_1892 +0.5 1.4 conserved protein of unknown function compare
PP_3766 +0.5 1.0 Lactoylglutathione lyase compare
PP_0516 +0.5 1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_1188 +0.5 3.2 C4-dicarboxylate transport protein compare
PP_1176 +0.5 0.6 conserved protein of unknown function compare
PP_1702 +0.5 2.1 Recombination-associated protein RdgC compare
PP_5248 +0.5 1.2 putative hydrolase compare
PP_1632 +0.5 1.3 conserved protein of unknown function compare
PP_5704 +0.4 2.5 conserved protein of unknown function compare
PP_3121 +0.4 1.7 transcriptional regulator, LysR family compare
PP_1038 +0.4 0.8 conserved protein of unknown function compare
PP_2749 +0.4 2.0 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1749 +0.4 2.4 GNAT family acetyltransferase compare
PP_1713 +0.4 1.4 Transcriptional regulator PcaQ compare
PP_3898 +0.4 2.4 conserved protein of unknown function compare
PP_3637 +0.4 1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3576 +0.4 2.6 putative Transmembrane sensor compare
PP_4199 +0.4 0.8 putative Lipoprotein compare
PP_0482 +0.4 3.0 bacterioferritin compare
PP_4870 +0.4 1.6 Azurin compare
PP_2103 +0.4 1.9 conserved protein of unknown function compare
PP_4682 +0.4 2.2 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_0781 +0.4 1.7 conserved protein of unknown function compare
PP_4418 +0.4 2.3 conserved protein of unknown function compare
PP_3040 +0.4 1.9 Pyocin R2_PP, holin compare
PP_3378 +0.4 1.0 putative 2-ketogluconokinase compare
PP_5640 +0.4 1.3 conserved protein of unknown function compare
PP_4424 +0.4 1.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3866 +0.4 1.1 conserved protein of unknown function compare
PP_4397 +0.4 3.1 Flagellar brake protein YcgR compare
PP_2429 +0.4 0.9 putative Membrane protein compare
PP_0276 +0.4 0.9 Transcriptional regulator, Cro/CI family compare
PP_4316 +0.4 2.0 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2882 +0.4 2.0 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_4529 +0.4 2.3 conserved protein of unknown function compare
PP_2336 +0.4 1.4 aconitate hydratase 1 compare
PP_0775 +0.4 1.0 conserved protein of unknown function compare
PP_5603 +0.4 2.5 putative FAD dependent oxidoreductase compare
PP_1137 +0.4 2.2 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_5073 +0.4 0.7 conserved exported protein of unknown function compare
PP_1479 +0.4 1.9 HicB protein compare
PP_1147 +0.4 2.1 conserved protein of unknown function compare
PP_4868 +0.4 2.5 Nicotinate phosphoribosyltransferase compare
PP_2835 +0.4 1.3 putative oxidoreductase compare
PP_2255 +0.4 2.5 C4-dicarboxylate transport protein compare
PP_0150 +0.4 1.7 conserved exported protein of unknown function compare
PP_0711 +0.4 1.9 putative hydrolase compare
PP_1237 +0.4 0.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2766 +0.4 1.7 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_0881 +0.4 2.3 dipeptide ABC transporter - putative membrane subunit compare
PP_5583 +0.4 0.9 conserved protein of unknown function compare
PP_2692 +0.4 1.9 putative Transporter, BCCT family compare
PP_1181 +0.4 2.0 DNA-binding response regulator compare
PP_5293 +0.4 2.7 conserved protein of unknown function compare
PP_5714 +0.4 1.4 conserved protein of unknown function compare
PP_3840 +0.4 0.8 conserved protein of unknown function compare
PP_2748 +0.4 1.3 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2256 +0.4 1.7 Transcriptional regulator, Cro/CI family compare
PP_2254 +0.4 1.5 Transcriptional regulator, GntR family compare
PP_1191 +0.4 2.2 S4 domain protein compare
PP_5499 +0.4 1.3 conserved protein of unknown function compare
PP_5107 +0.4 2.4 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_1322 +0.4 0.5 putative Lipoprotein compare
PP_2747 +0.4 0.7 conserved protein of unknown function compare
PP_1114 +0.4 1.6 SEC-C domain protein compare
PP_2653 +0.4 1.5 Transcriptional regulator, Cro/CI family compare
PP_2124 +0.4 1.4 putative Glycosyl transferase compare
PP_0190 +0.4 2.6 putative disulfide bond formation protein B compare
PP_0621 +0.4 2.2 conserved protein of unknown function compare
PP_4171 +0.4 3.5 conserved exported protein of unknown function compare
PP_4920 +0.4 2.7 putative Lipoprotein compare
PP_0947 +0.4 1.7 conserved membrane protein of unknown function compare
PP_3946 +0.4 0.6 HTH-type transcriptional repressor NicR compare
PP_2000 +0.4 0.6 amidophosphoribosyl transferase compare
PP_5161 +0.4 2.4 putative lysophospholipase compare
PP_0564 +0.4 2.8 conserved protein of unknown function compare
PP_2847 +0.4 0.9 Urease accessory protein UreJ compare
PP_4669 +0.4 1.3 OmpA family protein compare
PP_3095 +0.4 2.0 Protein ClpV1 compare
PP_4502 +0.4 1.4 putative enzyme compare
PP_1047 +0.4 2.5 putative protein secretion protein for export compare
PP_1876 +0.4 1.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5717 +0.3 0.9 conserved protein of unknown function compare
PP_5441 +0.3 1.5 protein of unknown function compare
PP_1454 +0.3 1.0 conserved protein of unknown function compare
PP_3942 +0.3 1.8 maleate isomerase compare
PP_1169 +0.3 2.6 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) compare
PP_2712 +0.3 2.0 conserved exported protein of unknown function compare
PP_0869 +0.3 1.9 osmoprotectant ABC transporter permease subunit compare
PP_2896 +0.3 1.8 conserved protein of unknown function compare
PP_0430 +0.3 2.4 conserved protein of unknown function compare
PP_5094 +0.3 1.3 putative enzyme with PLP binding domain compare
PP_4703 +0.3 2.3 conserved protein of unknown function compare
PP_2176 +0.3 1.8 transcriptional regulator, LysR family compare
PP_4627 +0.3 1.8 transcriptional regulator, LysR family compare
PP_2243 +0.3 1.4 conserved protein of unknown function compare
PP_5243 +0.3 1.8 putative hydrolase compare
PP_0155 +0.3 2.8 pyridine nucleotide transhydrogenase, beta subunit compare
PP_0936 +0.3 2.4 septum formation protein compare
PP_4285 +0.3 1.4 5-hydroxyisourate hydrolase compare
PP_4173 +0.3 2.4 Sensor histidine kinase/response regulator compare
PP_4034 +0.3 1.9 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_4966 +0.3 1.4 transcriptional regulator of methionine metabolism compare
PP_3481 +0.3 0.8 conserved exported protein of unknown function compare
PP_2652 +0.3 2.4 putative Hydratase/decarboxylase compare
PP_0575 +0.3 1.8 conserved membrane protein of unknown function compare
PP_3355 +0.3 2.1 Beta-ketothiolase compare
PP_5701 +0.3 1.0 conserved protein of unknown function compare
PP_4499 +0.3 1.8 putative maturation enzyme compare
PP_4271 +0.3 0.6 conserved protein of unknown function compare
PP_2219 +0.3 1.4 conserved protein of unknown function compare
PP_0182 +0.3 1.4 conserved protein of unknown function compare
PP_2655 +0.3 1.4 conserved protein of unknown function compare
PP_2399 +0.3 1.8 conserved protein of unknown function compare
PP_0439 +0.3 1.6 conserved protein of unknown function compare
PP_0159 +0.3 2.8 putative CoA-transferase family III compare
PP_2137 +0.3 0.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_1269 +0.3 0.6 Universal stress protein family compare
PP_1650 +0.3 3.0 Sensor protein GacS compare
PP_2976 +0.3 0.6 putative transposase compare
PP_4930 +0.3 1.8 putative small multidrug resistance protein compare
PP_1207 +0.3 1.6 conserved protein of unknown function compare
PP_1048 +0.3 0.5 putative protein secretion protein for export compare
PP_1605 +0.3 1.3 Ribonuclease HII compare
PP_2403 +0.3 0.5 Chemotaxis protein CheY compare
PP_1381 +0.3 0.6 4-carboxymuconolactone decarboxylase compare
PP_1508 +0.3 1.6 conserved protein of unknown function compare
PP_2511 +0.3 1.2 conserved protein of unknown function compare
PP_2733 +0.3 2.0 conserved membrane protein of unknown function compare
PP_2210 +0.3 1.5 LysR family transcriptional regulator compare
PP_5698 +0.3 1.4 conserved exported protein of unknown function compare
PP_3243 +0.3 1.4 Acetyltransferase, GNAT family compare
PP_3746 +0.3 1.3 glycolate oxidase, putative FAD-binding subunit compare
PP_0488 +0.3 2.0 putative NADP-dependent dehydrogenase HI_1430 compare
PP_0398 +0.3 1.4 Thiosulfate sulfurtransferase GlpE compare
PP_2899 +0.3 0.8 conserved exported protein of unknown function compare
PP_3757 +0.3 1.3 Chemotaxis protein CheY compare
PP_3265 +0.3 1.4 putative phosphohydrolase of unknown function compare
PP_1130 +0.3 1.6 conserved protein of unknown function compare
PP_3248 +0.3 1.6 Dyp-type peroxidase family protein compare
PP_4349 +0.3 2.0 conserved protein of unknown function compare
PP_0153 +0.3 0.7 hypothetical protein compare
PP_0509 +0.3 1.4 conserved protein of unknown function compare
PP_0181 +0.3 1.8 conserved protein of unknown function compare
PP_5580 +0.3 0.6 protein of unknown function compare
PP_0492 +0.3 2.1 formate dehydrogenase formation protein compare
PP_5328 +0.3 0.7 putative phosphate transport system permease protein compare
PP_3488 +0.3 1.8 Sco1/SenC family protein compare
PP_1156 +0.3 2.3 putative inner membrane protein compare
PP_3627 +0.3 1.8 conserved protein of unknown function compare
PP_2274 +0.3 1.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no phage control experiments