Experiment set42IT004 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most detrimental genes:

  gene name fitness t score description  
PP_4994 +1.5 4.6 conserved protein of unknown function compare
PP_1655 +1.4 7.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2429 +1.0 2.0 putative Membrane protein compare
PP_5582 +0.9 2.2 conserved protein of unknown function compare
PP_1656 +0.9 6.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_3946 +0.9 2.1 HTH-type transcriptional repressor NicR compare
PP_5248 +0.8 1.8 putative hydrolase compare
PP_0948 +0.7 2.2 Phosphocarrier protein HPr compare
PP_0512 +0.7 3.8 hypothetical protein compare
PP_3726 +0.7 1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_2121 +0.7 1.7 putative Lipoprotein compare
PP_3580 +0.7 2.1 conserved protein of unknown function compare
PP_1164 +0.7 2.4 Transcriptional regulator, LysR family compare
PP_4642 +0.7 1.5 Cyclic diguanosine monophosphate-binding protein compare
PP_0841 +0.7 2.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4045 +0.6 1.4 conserved protein of unknown function compare
PP_2976 +0.6 0.9 putative transposase compare
PP_5274 +0.6 3.1 conserved protein of unknown function compare
PP_4136 +0.6 0.9 Transcriptional regulator, LuxR family compare
PP_2189 +0.6 2.0 conserved protein of unknown function compare
PP_t49 +0.6 3.6 tRNA-Met compare
PP_3903 +0.6 2.4 conserved protein of unknown function compare
PP_3519 +0.6 1.1 putative Lipoprotein compare
PP_5453 +0.6 1.3 conserved protein of unknown function compare
PP_3378 +0.6 2.0 putative 2-ketogluconokinase compare
PP_3098 +0.6 1.3 conserved protein of unknown function compare
PP_1829 +0.6 2.2 Hydrolase, alpha/beta fold family compare
PP_4499 +0.6 2.2 putative maturation enzyme compare
PP_5083 +0.5 2.3 putative Type IV pili biogenesis protein PilM compare
PP_2748 +0.5 2.5 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2459 +0.5 2.0 ribose pyranase compare
PP_1167 +0.5 3.2 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_0653 +0.5 1.4 conserved protein of unknown function compare
PP_5711 +0.5 2.8 protein of unknown function compare
PP_3637 +0.5 1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2090 +0.5 1.9 Uroporphyrinogen-III C-methyltransferase compare
PP_1048 +0.5 1.0 putative protein secretion protein for export compare
PP_2568 +0.5 1.3 Ring-cleaving dioxygenase compare
PP_1111 +0.5 3.4 putative Synthetase compare
PP_0319 +0.5 1.8 conserved protein of unknown function compare
PP_4424 +0.5 2.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1147 +0.5 2.2 conserved protein of unknown function compare
PP_2858 +0.5 2.6 conserved exported protein of unknown function compare
PP_1201 +0.5 2.5 conserved exported protein of unknown function compare
PP_5674 +0.5 2.0 conserved protein of unknown function compare
PP_0643 +0.5 2.5 protein of unknown function compare
PP_3380 +0.5 2.2 2-ketogluconate utilization repressor compare
PP_1269 +0.5 1.1 Universal stress protein family compare
PP_2313 +0.5 1.6 conserved membrane protein of unknown function compare
PP_5295 +0.5 1.7 conserved protein of unknown function compare
PP_1605 +0.5 2.0 Ribonuclease HII compare
PP_1141 +0.5 3.3 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_4285 +0.5 2.4 5-hydroxyisourate hydrolase compare
PP_1178 +0.5 2.1 conserved protein of unknown function compare
PP_3341 +0.5 1.9 nickel-responsive regulator compare
PP_4449 +0.5 2.2 conserved protein of unknown function compare
PP_4426 +0.5 2.4 Amino acid ABC transporter, permease protein compare
PP_4687 +0.5 2.1 Hemin import ATP-binding protein HmuV compare
PP_2747 +0.5 1.2 conserved protein of unknown function compare
PP_1207 +0.5 2.2 conserved protein of unknown function compare
PP_0377 +0.5 1.3 coenzyme PQQ synthesis protein D compare
PP_3824 +0.5 1.5 conserved exported protein of unknown function compare
PP_3258 +0.5 2.3 conserved protein of unknown function compare
PP_4531 +0.5 2.7 conserved exported protein of unknown function compare
PP_3190 +0.5 2.0 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5232 +0.5 2.3 conserved protein of unknown function compare
PP_1633 +0.5 1.5 conserved exported protein of unknown function compare
PP_4314 +0.5 2.2 conserved protein of unknown function compare
PP_2581 +0.5 1.3 conserved protein of unknown function compare
PP_2764 +0.5 1.7 FMN reductase (NADPH) compare
PP_3935 +0.5 1.6 conserved protein of unknown function compare
PP_0153 +0.4 1.9 hypothetical protein compare
PP_2653 +0.4 2.5 Transcriptional regulator, Cro/CI family compare
PP_3064 +0.4 1.3 Phage tail protein compare
PP_2336 +0.4 1.8 aconitate hydratase 1 compare
PP_5427 +0.4 2.6 conserved exported protein of unknown function compare
PP_2712 +0.4 2.7 conserved exported protein of unknown function compare
PP_4999 +0.4 0.4 dihydroorotase-like protein compare
PP_5569 +0.4 1.3 protein of unknown function of phage origin compare
PP_t13 +0.4 1.7 tRNA-Lys compare
PP_2716 +0.4 1.8 arsenate reductase compare
PP_4505 +0.4 2.3 Sensor histidine kinase compare
PP_4178 +0.4 2.4 Dienelactone hydrolase family protein compare
PP_1026 +0.4 1.4 Peptidase, M23/M37 family compare
PP_4701 +0.4 0.8 glucose-6-phosphate isomerase compare
PP_4173 +0.4 3.3 Sensor histidine kinase/response regulator compare
PP_3522 +0.4 1.7 conserved protein of unknown function compare
PP_0429 +0.4 2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2947 +0.4 1.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2615 +0.4 0.9 hemolysin-coregulated protein compare
PP_4251 +0.4 2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_2672 +0.4 2.2 Transcriptional activator protein ExaE compare
PP_4847 +0.4 1.8 chaperone modulatory of CbpA co-chaperone protein compare
PP_1926 +0.4 2.2 putative phosphotyrosine-protein phosphatase compare
PP_3387 +0.4 2.5 protein of unknown function compare
PP_4098 +0.4 1.0 UvrABC system protein C compare
PP_0505 +0.4 2.3 conserved protein of unknown function compare
PP_4726 +0.4 1.3 Chaperone protein DnaJ compare
PP_1319 +0.4 1.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4665 +0.4 3.1 conserved protein of unknown function compare
PP_3363 +0.4 2.0 putative thymidylate kinase compare
PP_2499 +0.4 1.1 conserved protein of unknown function compare
PP_3532 +0.4 1.2 Transcriptional regulator, AsnC family compare
PP_4808 +0.4 1.3 23S rRNA m3psi1915 methyltransferase compare
PP_2507 +0.4 2.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2725 +0.4 1.7 Protease PfpI compare
PP_1189 +0.4 2.1 conserved hypothetical protein compare
PP_2882 +0.4 2.2 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1161 +0.4 2.3 putative Lipoprotein compare
PP_5747 +0.4 2.7 pyridine nucleotide transhydrogenase subunit alpha compare
PP_5243 +0.4 1.6 putative hydrolase compare
PP_1176 +0.4 0.9 conserved protein of unknown function compare
PP_4769 +0.4 2.0 conserved protein of unknown function compare
PP_4171 +0.4 3.6 conserved exported protein of unknown function compare
PP_0440 +0.4 1.9 Elongation factor Tu-A compare
PP_3876 +0.4 1.7 conserved protein of unknown function compare
PP_4584 +0.4 2.3 putative endonuclease compare
PP_1938 +0.4 1.4 conserved protein of unknown function compare
PP_2322 +0.4 1.6 Major outer membrane lipoprotein compare
PP_2737 +0.4 0.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0504 +0.4 1.7 Outer membrane protein OprG compare
PP_4009 +0.4 1.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_4397 +0.4 2.9 Flagellar brake protein YcgR compare
PP_4132 +0.4 1.8 conserved protein of unknown function compare
PP_0269 +0.4 2.7 putative Glutamate synthase, large subunit compare
PP_4204 +0.4 1.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5393 +0.4 0.7 putative metal-binding chaperone compare
PP_4260 +0.4 2.1 conserved protein of unknown function compare
PP_0905 +0.4 1.2 conserved exported protein of unknown function compare
PP_3762 +0.4 1.3 Response regulator compare
PP_1168 +0.4 1.9 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_0202 +0.4 1.8 CBS domain-containing protein compare
PP_3102 +0.4 1.5 conserved protein of unknown function compare
PP_2424 +0.4 2.2 putative 2'-5' RNA ligase compare
PP_2044 +0.4 0.9 conserved inner membrane protein of unknown function compare
PP_1224 +0.4 1.7 periplasmic subunit of the TolQRA transport system compare
PP_0142 +0.4 2.1 putative ABC transporter, permease protein compare
PP_1611 +0.3 2.2 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_4625 +0.3 2.1 anti-holin regulator of holin CidA compare
PP_3232 +0.3 1.9 Acetyltransferase, GNAT family compare
PP_1199 +0.3 2.4 toxin-antitoxin system, higB toxin like compare
PP_4793 +0.3 0.9 conserved protein of unknown function compare
PP_2124 +0.3 1.8 putative Glycosyl transferase compare
PP_1518 +0.3 2.1 conserved exported protein of unknown function compare
PP_3094 +0.3 1.1 conserved exported protein of unknown function compare
PP_4829 +0.3 1.6 putative precorrin-3B synthase compare
PP_2980 +0.3 2.0 conserved protein of unknown function compare
PP_5678 +0.3 2.1 protein of unknown function compare
PP_3095 +0.3 1.9 Protein ClpV1 compare
PP_5608 +0.3 2.1 putative exported protein compare
PP_3056 +0.3 1.9 putative Pyocin R2_PP, tail fiber protein compare
PP_4418 +0.3 1.8 conserved protein of unknown function compare
PP_2640 +0.3 1.4 Acetyltransferase, GNAT family compare
PP_4152 +0.3 2.5 conserved protein of unknown function compare
PP_2073 +0.3 0.9 Acetyltransferase, GNAT family compare
PP_3476 +0.3 1.9 Type II secretion system protein G compare
PP_4271 +0.3 0.6 conserved protein of unknown function compare
PP_4534 +0.3 1.5 conserved protein of unknown function compare
PP_2131 +0.3 1.9 DNA-binding ATPase involved in replication compare
PP_1643 +0.3 1.6 conserved membrane protein of unknown function compare
PP_0129 +0.3 2.7 GGDEF domain protein compare
PP_0125 +0.3 1.1 putative cytochrome c-type protein compare
PP_2226 +0.3 1.8 putative K(+)/H(+) antiporter subunit F compare
PP_5491 +0.3 1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_3942 +0.3 1.6 maleate isomerase compare
PP_0532 +0.3 1.4 conserved exported protein of unknown function compare
PP_0848 +0.3 0.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4038 +0.3 2.1 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_3052 +0.3 0.7 conserved protein of unknown function compare
PP_0412 +0.3 2.1 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0157 +0.3 2.3 transcriptional activator of gcdH, LysR family compare
PP_0424 +0.3 2.0 DNA-binding transcriptional dual regulator compare
PP_5633 +0.3 1.6 conserved protein of unknown function compare
PP_2873 +0.3 1.3 conserved protein of unknown function, UPF0145 family compare
PP_1646 +0.3 1.7 putative Thioredoxin compare
PP_1314 +0.3 1.8 putative NAD(P)-linked reductase compare
PP_1528 +0.3 0.5 conserved protein of unknown function compare
PP_0986 +0.3 1.8 aminomethyltransferase compare
PP_1381 +0.3 0.6 4-carboxymuconolactone decarboxylase compare
PP_2347 +0.3 1.6 DNA-binding response regulator compare
PP_0624 +0.3 2.4 Uncharacterized protein YfiH compare
PP_1119 +0.3 1.7 conserved protein of unknown function compare
PP_3840 +0.3 0.7 conserved protein of unknown function compare
PP_4925 +0.3 1.3 conserved protein of unknown function compare
PP_1553 +0.3 1.0 conserved protein of unknown function compare
PP_0155 +0.3 2.7 pyridine nucleotide transhydrogenase, beta subunit compare
PP_5446 +0.3 1.5 protein of unknown function compare
PP_3891 +0.3 1.5 conserved protein of unknown function compare
PP_2256 +0.3 1.7 Transcriptional regulator, Cro/CI family compare
PP_4262 +0.3 1.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5SB +0.3 1.1 5S ribosomal RNA compare
PP_4890 +0.3 1.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0416 +0.3 1.6 Phosphoglycolate phosphatase compare
PP_0493 +0.3 2.2 selenocysteine synthase compare
PP_0422 +0.3 1.7 Indole-3-glycerol phosphate synthase compare
PP_5221 +0.3 1.7 conserved protein of unknown function, UPF0178 family compare
PP_0482 +0.3 2.1 bacterioferritin compare
PP_1628 +0.3 2.0 NMN amidohydrolase compare
PP_4627 +0.3 1.6 transcriptional regulator, LysR family compare
PP_4290 +0.3 1.9 uric acid permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no phage control experiments