| | gene | name | fitness | t score | description | |
|---|
| b1332 | ynaJ | +1.0 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b3860 | dsbA | +1.0 | 8.6 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1185 | dsbB | +1.0 | 4.9 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1936 | intG | +0.9 | 1.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1831 | proQ | +0.8 | 3.2 | putative solute/DNA competence effector (NCBI) | compare |
| b1476 | fdnI | +0.8 | 1.5 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b3790 | rffC | +0.8 | 5.1 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4481 | rffT | +0.8 | 5.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b4538 | yoeF | +0.7 | 2.3 | hypothetical protein (RefSeq) | compare |
| b2156 | lysP | +0.7 | 6.8 | lysine transporter (NCBI) | compare |
| b1176 | minC | +0.6 | 2.2 | septum formation inhibitor (NCBI) | compare |
| b2510 | b2510 | +0.6 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b3787 | rffD | +0.6 | 5.5 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3794 | rffM | +0.6 | 5.0 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b3791 | rffA | +0.6 | 4.9 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0798 | ybiA | +0.6 | 2.3 | hypothetical protein (NCBI) | compare |
| b3786 | rffE | +0.6 | 5.4 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b0843 | ybjH | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b4503 | yafF | +0.6 | 0.9 | no description | compare |
| b1954 | dsrA | +0.6 | 2.8 | regulatory antisense RNA (NCBI) | compare |
| b3784 | rfe | +0.6 | 5.1 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1195 | ymgE | +0.6 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b4410 | ecnA | +0.5 | 1.6 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b4480 | hdfR | +0.5 | 3.7 | transcriptional regulator HdfR (NCBI) | compare |
| b1830 | prc | +0.5 | 3.8 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3396 | mrcA | +0.5 | 5.2 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b4701 | sokX | +0.5 | 0.8 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2444 | yffM | +0.5 | 2.1 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1765 | ydjA | +0.5 | 0.9 | predicted oxidoreductase (NCBI) | compare |
| b1739 | osmE | +0.5 | 2.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b0630 | lipB | +0.5 | 0.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b4551 | yheV | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b2433 | b2433 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2934 | cmtB | +0.5 | 0.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1382 | ynbE | +0.5 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b3021 | ygiT | +0.4 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1183 | umuD | +0.4 | 1.5 | DNA polymerase V, subunit D (NCBI) | compare |
| b3147 | yraM | +0.4 | 3.9 | hypothetical protein (NCBI) | compare |
| b0542 | renD | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0183 | rnhB | +0.4 | 2.0 | ribonuclease HII (NCBI) | compare |
| b1448 | yncA | +0.4 | 1.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3250 | mreC | +0.4 | 1.6 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b2587 | kgtP | +0.4 | 2.9 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1138 | ymfE | +0.4 | 1.1 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1758 | b1758 | +0.4 | 1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b4603 | rseX | +0.4 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1251 | yciI | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1753 | ynjA | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1742 | b1742 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2741 | rpoS | +0.4 | 2.5 | RNA polymerase sigma factor (NCBI) | compare |
| b4609 | ryfD | +0.4 | 2.3 | Novel sRNA, function unknown (RefSeq) | compare |
| b1408 | b1408 | +0.4 | 2.3 | probable enzyme (VIMSS) | compare |
| b1792 | yeaO | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4573 | insZ | +0.4 | 2.4 | no description | compare |
| b3100 | yqjK | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b4704 | arrS | +0.4 | 0.2 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1434 | ydcN | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2486 | hyfF | +0.4 | 2.5 | NADH dehydrogenase subunit N (NCBI) | compare |
| b4157 | yjeN | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b0920 | ycbC | +0.3 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b1919 | yedO | +0.3 | 1.2 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b0388 | aroL | +0.3 | 1.9 | shikimate kinase II (NCBI) | compare |
| b4000 | hupA | +0.3 | 2.0 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.2 | orf, hypothetical protein (VIMSS) | compare |
| b2051 | wcaH | +0.3 | 0.8 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b0946 | ycbW | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4529 | ydbJ | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b4686 | yshB | +0.3 | 1.2 | expressed protein (RefSeq) | compare |
| b1305 | pspB | +0.3 | 1.8 | phage shock protein B (NCBI) | compare |
| b0880 | cspD | +0.3 | 1.1 | cold shock protein homolog (NCBI) | compare |
| b4660 | yhiL | +0.3 | 0.2 | no description | compare |
| b4533 | ynfO | +0.3 | 1.0 | Qin prophage; predicted protein (NCBI) | compare |
| b3027 | ygiZ | +0.3 | 0.2 | conserved inner membrane protein (NCBI) | compare |
| b2014 | yeeF | +0.3 | 2.2 | putative amino acid/amine transport protein (VIMSS) | compare |
| b3504 | yhiS | +0.3 | 0.3 | hypothetical protein (RefSeq) | compare |
| b1252 | tonB | +0.3 | 1.4 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1348 | lar | +0.3 | 1.0 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1724 | ydiZ | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b4431 | rprA | +0.3 | 1.2 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b3961 | oxyR | +0.3 | 2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.1 | no description | compare |
| b1227 | narI | +0.3 | 1.7 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b3238 | yhcN | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1566 | flxA | +0.3 | 1.4 | Qin prophage; predicted protein (NCBI) | compare |
| b2209 | eco | +0.3 | 0.6 | ecotin precursor (NCBI) | compare |
| b1113 | ycfS | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b4376 | osmY | +0.3 | 1.9 | periplasmic protein (NCBI) | compare |
| b1421 | trg | +0.3 | 1.8 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1469 | narU | +0.3 | 1.9 | nitrate/nitrite transporter (NCBI) | compare |
| b0942 | ycbU | +0.3 | 1.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0707 | ybgA | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b2208 | napF | +0.3 | 1.8 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b0852 | rimK | +0.3 | 2.2 | ribosomal protein S6 modification protein (NCBI) | compare |
| b1114 | mfd | +0.3 | 2.2 | transcription-repair coupling factor (NCBI) | compare |
| b2250 | b2250 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3512 | GadE | +0.3 | 1.8 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1342 | ydaN | +0.3 | 2.0 | zinc transporter (NCBI) | compare |
| b3764 | yifE | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.3 | 1.7 | ilvB operon leader peptide (NCBI) | compare |
| b1446 | ydcY | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2082 | ogrK | +0.3 | 1.7 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b0521 | ybcF | +0.3 | 2.1 | predicted carbamate kinase (NCBI) | compare |
| b2264 | menD | +0.3 | 2.4 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b4360 | yjjA | +0.3 | 2.0 | putative glycoprotein/receptor (VIMSS) | compare |
| b4367 | fhuF | +0.3 | 2.1 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b1515 | lsrD | +0.3 | 1.5 | AI2 transporter (NCBI) | compare |
| b0191 | yaeJ | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b3623 | rfaK | +0.3 | 1.0 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b1238 | tdk | +0.3 | 2.0 | thymidine kinase (NCBI) | compare |
| b4380 | yjjI | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b4460 | araH | +0.3 | 1.0 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b1731 | cedA | +0.3 | 1.1 | cell division modulator (RefSeq) | compare |
| b3844 | fre | +0.3 | 1.7 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1179 | ycgL | +0.3 | 1.4 | conserved protein (NCBI) | compare |
| b0819 | ybiS | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b3484 | yhhI | +0.3 | 1.1 | predicted transposase (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b4505 | insX | +0.3 | 0.7 | predicted IS protein (RefSeq) | compare |
| b0641 | rlpB | +0.3 | 1.2 | minor lipoprotein (NCBI) | compare |
| b0851 | nfsA | +0.3 | 1.6 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b4546 | ypeB | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b1669 | ydhT | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1618 | uidR | +0.3 | 1.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1733 | chbG | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b4388 | serB | +0.3 | 2.3 | 3-phosphoserine phosphatase (NCBI) | compare |
| b1349 | recT | +0.3 | 1.5 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1656 | sodB | +0.3 | 1.0 | superoxide dismutase, Fe (NCBI) | compare |
| b4313 | fimE | +0.3 | 2.2 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1542 | ydfI | +0.3 | 0.9 | predicted mannonate dehydrogenase (NCBI) | compare |
| b1764 | selD | +0.3 | 1.6 | selenophosphate synthetase (NCBI) | compare |
| b1823 | cspC | +0.3 | 0.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b2782 | chpA | +0.3 | 1.7 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b1811 | yoaH | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2212 | alkB | +0.3 | 1.4 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b1013 | ycdC | +0.3 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2356 | yfdM | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0766 | ybhA | +0.3 | 1.8 | predicted hydrolase (NCBI) | compare |
| b1562 | hokD | +0.3 | 1.2 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b0726 | sucA | +0.3 | 1.4 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b0226 | dinJ | +0.3 | 1.4 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1355 | b1355 | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1072 | flgA | +0.3 | 1.6 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b2565 | recO | +0.3 | 1.6 | DNA repair protein RecO (NCBI) | compare |
| b0617 | citD | +0.3 | 0.9 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1097 | yceG | +0.3 | 1.8 | predicted aminodeoxychorismate lyase (NCBI) | compare |
| b3686 | ibpB | +0.3 | 2.1 | heat shock chaperone (NCBI) | compare |
| b4513 | kdpF | +0.3 | 0.7 | potassium ion accessory transporter subunit (NCBI) | compare |
| b2586 | yfiM | +0.3 | 1.3 | predicted protein (RefSeq) | compare |
| b0102 | yacF | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b2645 | yfjZ | +0.3 | 1.6 | CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b1848 | yebG | +0.2 | 0.7 | conserved protein regulated by LexA (NCBI) | compare |
| b1698 | ydiR | +0.2 | 1.7 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b1070 | flgN | +0.2 | 0.7 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b1590 | ynfH | +0.2 | 1.4 | oxidoreductase, membrane subunit (NCBI) | compare |
| b2488 | hyfH | +0.2 | 1.4 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b4596 | yciZ | +0.2 | 0.6 | hypothetical protein (RefSeq) | compare |
| b3120 | yhaB | +0.2 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1307 | pspD | +0.2 | 0.9 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1463 | nhoA | +0.2 | 2.0 | N-hydroxyarylamine O-acetyltransferase (NCBI) | compare |
| b2195 | ccmG | +0.2 | 0.9 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1264 | trpE | +0.2 | 1.8 | anthranilate synthase component I (NCBI) | compare |
| b4241 | treR | +0.2 | 2.2 | trehalose repressor (NCBI) | compare |
| b1462 | b1462 | +0.2 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1038 | csgF | +0.2 | 1.1 | predicted transport protein (NCBI) | compare |
| b4386 | lplA | +0.2 | 1.9 | lipoate-protein ligase A (NCBI) | compare |
| b3990 | thiH | +0.2 | 1.9 | thiamine biosynthesis protein ThiH (NCBI) | compare |
| b2221 | atoD | +0.2 | 1.3 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b3725 | pstB | +0.2 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b3269 | yhdX | +0.2 | 2.0 | predicted amino-acid transporter subunit (NCBI) | compare |
| b2263 | yfbB | +0.2 | 0.9 | predicted peptidase (NCBI) | compare |
| b4385 | yjjJ | +0.2 | 2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1625 | ydgT | +0.2 | 1.5 | predicted regulator (NCBI) | compare |
| b3973 | birA | +0.2 | 0.9 | biotin--protein ligase (NCBI) | compare |
| b0018 | mokC | +0.2 | 0.7 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b2535 | csiE | +0.2 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3236 | mdh | +0.2 | 1.8 | malate dehydrogenase (NCBI) | compare |
| b1073 | flgB | +0.2 | 1.4 | flagellar basal-body rod protein B (NCBI) | compare |
| b4381 | deoC | +0.2 | 1.6 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b0807 | ybiN | +0.2 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1233 | ychJ | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b2291 | yfbR | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b4042 | dgkA | +0.2 | 0.1 | diacylglycerol kinase (NCBI) | compare |
| b2617 | smpA | +0.2 | 1.3 | small membrane protein A (VIMSS) | compare |
| b0730 | mngR | +0.2 | 0.5 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1530 | marR | +0.2 | 1.0 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b2996 | hybA | +0.2 | 1.8 | hydrogenase 2 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b4358 | yjjN | +0.2 | 1.9 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (RefSeq) | compare |
| b3940 | metL | +0.2 | 2.0 | bifunctional aspartate kinase II/homoserine dehydrogenase II (NCBI) | compare |
| b4017 | arpA | +0.2 | 1.3 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b2317 | dedA | +0.2 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b2165 | yeiN | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b0193 | yaeF | +0.2 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4108 | phnA | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b3698 | yidB | +0.2 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1789 | yeaL | +0.2 | 1.0 | conserved inner membrane protein (NCBI) | compare |
| b3752 | rbsK | +0.2 | 2.0 | ribokinase (NCBI) | compare |
| b1558 | cspF | +0.2 | 0.9 | Qin prophage; cold shock protein (NCBI) | compare |
| b1033 | ycdW | +0.2 | 1.6 | putative dehydrogenase (VIMSS) | compare |
| b0933 | ssuB | +0.2 | 1.2 | alkanesulfonate transporter subunit (NCBI) | compare |