| | gene | name | fitness | t score | description | |
|---|
| b1361 | ydaW | +1.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1205 | ychH | +1.1 | 2.4 | predicted inner membrane protein (NCBI) | compare |
| b1185 | dsbB | +1.1 | 5.5 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b4603 | rseX | +1.0 | 1.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3860 | dsbA | +1.0 | 8.4 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1332 | ynaJ | +0.9 | 0.7 | predicted inner membrane protein (NCBI) | compare |
| b4538 | yoeF | +0.8 | 2.1 | hypothetical protein (RefSeq) | compare |
| b3120 | yhaB | +0.7 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4596 | yciZ | +0.7 | 1.0 | hypothetical protein (RefSeq) | compare |
| b4676 | yoaK | +0.7 | 0.7 | expressed protein (RefSeq) | compare |
| b1348 | lar | +0.7 | 2.4 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1160 | elbA | +0.7 | 1.1 | hypothetical protein (NCBI) | compare |
| b1025 | ycdT | +0.6 | 1.7 | predicted diguanylate cyclase (NCBI) | compare |
| b1408 | b1408 | +0.6 | 4.1 | probable enzyme (VIMSS) | compare |
| b2356 | yfdM | +0.6 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b2051 | wcaH | +0.6 | 1.3 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b0542 | renD | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2809 | b2809 | +0.5 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1357 | ydaS | +0.5 | 2.2 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1610 | tus | +0.5 | 2.9 | DNA replication terminus site-binding protein (NCBI) | compare |
| b0843 | ybjH | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0388 | aroL | +0.5 | 3.5 | shikimate kinase II (NCBI) | compare |
| b1415 | aldA | +0.5 | 3.5 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b1399 | paaX | +0.5 | 3.0 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b1831 | proQ | +0.5 | 2.3 | putative solute/DNA competence effector (NCBI) | compare |
| b2504 | yfgG | +0.5 | 0.9 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1085 | b1085 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1753 | ynjA | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b1724 | ydiZ | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b1739 | osmE | +0.5 | 2.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b4480 | hdfR | +0.5 | 3.2 | transcriptional regulator HdfR (NCBI) | compare |
| b4519 | icdC | +0.5 | 2.4 | no description | compare |
| b4651 | yibW | +0.5 | 0.4 | no description | compare |
| b0617 | citD | +0.5 | 1.6 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1930 | yedF | +0.4 | 3.3 | hypothetical protein (NCBI) | compare |
| b4520 | ymgF | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1709 | btuD | +0.4 | 0.9 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1387 | maoC | +0.4 | 2.6 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b4506 | ykgO | +0.4 | 2.3 | rpmJ (L36) paralog (NCBI) | compare |
| b0946 | ycbW | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1961 | dcm | +0.4 | 1.1 | DNA cytosine methylase (NCBI) | compare |
| b4152 | frdC | +0.4 | 1.5 | fumarate reductase subunit C (NCBI) | compare |
| b1353 | sieB | +0.4 | 2.5 | phage superinfection exclusion protein (VIMSS) | compare |
| b1936 | intG | +0.4 | 0.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1613 | manA | +0.4 | 1.4 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2510 | b2510 | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1103 | ycfF | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2071 | yegJ | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b4529 | ydbJ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1506 | yneL | +0.4 | 0.8 | predicted transcriptional regulator (NCBI) | compare |
| b1410 | ynbC | +0.4 | 2.5 | predicted hydrolase (NCBI) | compare |
| b1195 | ymgE | +0.4 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b3563 | yiaB | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b4410 | ecnA | +0.4 | 1.1 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b4546 | ypeB | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b0798 | ybiA | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1414 | ydcF | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b1431 | ydcL | +0.4 | 2.4 | predicted lipoprotein (NCBI) | compare |
| b2684 | mprA | +0.4 | 1.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0218 | yafU | +0.4 | 1.4 | predicted inner membrane protein (RefSeq) | compare |
| b2481 | hyfA | +0.4 | 2.1 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b1419 | ydcA | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b3764 | yifE | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b4492 | ydbA | +0.4 | 2.8 | no description | compare |
| b1422 | ydcI | +0.4 | 1.9 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1342 | ydaN | +0.4 | 2.3 | zinc transporter (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.7 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b1792 | yeaO | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1948 | fliP | +0.4 | 2.0 | flagellar biosynthesis protein P (NCBI) | compare |
| b1129 | phoQ | +0.4 | 0.9 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b3618 | htrL | +0.3 | 2.9 | involved in lipopolysaccharide biosynthesis (VIMSS) | compare |
| b3021 | ygiT | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2163 | yeiL | +0.3 | 2.3 | putative transcriptional regulator (VIMSS) | compare |
| b1733 | chbG | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1427 | rimL | +0.3 | 1.2 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1607 | ydgC | +0.3 | 1.1 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1153 | ymfQ | +0.3 | 1.1 | e14 prophage; conserved protein (NCBI) | compare |
| b1138 | ymfE | +0.3 | 0.9 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.7 | conserved inner membrane protein (RefSeq) | compare |
| b4376 | osmY | +0.3 | 2.0 | periplasmic protein (NCBI) | compare |
| b4551 | yheV | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b2617 | smpA | +0.3 | 1.5 | small membrane protein A (VIMSS) | compare |
| b1768 | ydjB | +0.3 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3037 | ygiB | +0.3 | 2.0 | conserved outer membrane protein (RefSeq) | compare |
| b1434 | ydcN | +0.3 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2209 | eco | +0.3 | 0.9 | ecotin precursor (NCBI) | compare |
| b2017 | yefM | +0.3 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b2859 | ygeO | +0.3 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1070 | flgN | +0.3 | 0.9 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b2156 | lysP | +0.3 | 2.7 | lysine transporter (NCBI) | compare |
| b3624 | rfaZ | +0.3 | 1.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4640 | yoeG | +0.3 | 1.1 | no description | compare |
| b2804 | fucU | +0.3 | 1.6 | L-fucose mutarotase (NCBI) | compare |
| b3613 | yibP | +0.3 | 1.0 | putative membrane protein (VIMSS) | compare |
| b4527 | b1354 | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0191 | yaeJ | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b1424 | mdoD | +0.3 | 2.2 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b0933 | ssuB | +0.3 | 1.7 | alkanesulfonate transporter subunit (NCBI) | compare |
| b1469 | narU | +0.3 | 2.3 | nitrate/nitrite transporter (NCBI) | compare |
| b1689 | b1689 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4418 | sraB | +0.3 | 0.7 | unknown RNA (NCBI) | compare |
| b1395 | paaH | +0.3 | 2.6 | 3-hydroxybutyryl-CoA dehydrogenase (NCBI) | compare |
| b1742 | b1742 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0889 | lrp | +0.3 | 1.3 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b0183 | rnhB | +0.3 | 2.0 | ribonuclease HII (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b0937 | ssuE | +0.3 | 1.4 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b1442 | ydcU | +0.3 | 2.2 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1698 | ydiR | +0.3 | 1.5 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b2959 | yggL | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4458 | oxyS | +0.3 | 0.5 | global regulatory RNA (NCBI) | compare |
| b1951 | rcsA | +0.3 | 0.7 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b1520 | b1520 | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4509 | ylcG | +0.3 | 1.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2741 | rpoS | +0.3 | 2.0 | RNA polymerase sigma factor (NCBI) | compare |
| b2096 | gatY | +0.3 | 1.8 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b3443 | yrhA | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0547 | ybcN | +0.3 | 2.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1463 | nhoA | +0.3 | 2.2 | N-hydroxyarylamine O-acetyltransferase (NCBI) | compare |
| b0880 | cspD | +0.3 | 0.9 | cold shock protein homolog (NCBI) | compare |
| b4598 | yncL | +0.3 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1858 | znuC | +0.3 | 2.2 | high-affinity zinc transporter ATPase (NCBI) | compare |
| b1394 | paaG | +0.3 | 1.7 | enoyl-CoA hydratase (NCBI) | compare |
| b3723 | bglG | +0.3 | 1.9 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b2312 | purF | +0.3 | 2.3 | amidophosphoribosyltransferase (NCBI) | compare |
| b3836 | b3836 | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1063 | yceB | +0.3 | 1.5 | predicted lipoprotein (NCBI) | compare |
| b4646 | yrdE | +0.3 | 1.3 | no description | compare |
| b1454 | yncG | +0.3 | 1.4 | predicted enzyme (NCBI) | compare |
| b1467 | narY | +0.3 | 1.6 | nitrate reductase 2 (NRZ), beta subunit (NCBI) | compare |
| b0589 | fepG | +0.3 | 1.9 | iron-enterobactin transporter subunit (NCBI) | compare |
| b1107 | nagZ | +0.3 | 1.7 | beta-hexosaminidase (NCBI) | compare |
| b0535 | fimZ | +0.3 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1110 | ycfJ | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1172 | ymgG | +0.3 | 2.0 | conserved protein, UPF0757 family (RefSeq) | compare |
| b1390 | paaC | +0.3 | 1.9 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b4642 | yoeD | +0.3 | 0.9 | no description | compare |
| b4579 | yaiX | +0.3 | 1.9 | no description | compare |
| b4444 | rygA | +0.3 | 1.4 | unknown RNA (NCBI) | compare |
| b4568 | ytjA | +0.3 | 1.2 | predicted protein (RefSeq) | compare |
| b4460 | araH | +0.3 | 0.8 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b3135 | agaA | +0.3 | 1.9 | predicted truncated N-acetylgalactosamine-6-phosphate deacetylase (RefSeq) | compare |
| b2486 | hyfF | +0.3 | 1.9 | NADH dehydrogenase subunit N (NCBI) | compare |
| b2409 | yfeR | +0.3 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2945 | endA | +0.3 | 1.8 | DNA-specific endonuclease I (NCBI) | compare |
| b1345 | intR | +0.3 | 2.3 | Rac prophage; integrase (NCBI) | compare |
| b1344 | ydaO | +0.3 | 0.9 | predicted C32 tRNA thiolase (NCBI) | compare |
| b1977 | asnT | +0.3 | 1.2 | tRNA-Asn (NCBI) | compare |
| b1446 | ydcY | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | +0.3 | 0.9 | cytochrome b(561) (VIMSS) | compare |
| b0819 | ybiS | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b1421 | trg | +0.3 | 1.4 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b3009 | yghB | +0.3 | 1.9 | conserved inner membrane protein (NCBI) | compare |
| b0682 | ybfN | +0.3 | 1.5 | predicted lipoprotein (NCBI) | compare |
| b2399 | yfeD | +0.3 | 1.9 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0193 | yaeF | +0.3 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4503 | yafF | +0.3 | 0.3 | no description | compare |
| b1158 | pin | +0.3 | 1.7 | e14 prophage; site-specific DNA recombinase (NCBI) | compare |
| b0852 | rimK | +0.3 | 1.6 | ribosomal protein S6 modification protein (NCBI) | compare |
| b1038 | csgF | +0.3 | 1.2 | predicted transport protein (NCBI) | compare |
| b4360 | yjjA | +0.3 | 1.1 | putative glycoprotein/receptor (VIMSS) | compare |
| b0713 | ybgL | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b0641 | rlpB | +0.3 | 0.8 | minor lipoprotein (NCBI) | compare |
| b3129 | sohA | +0.3 | 1.7 | predicted regulator (NCBI) | compare |
| b0632 | dacA | +0.3 | 2.0 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b4494 | arpB | +0.3 | 0.8 | no description | compare |
| b2419 | yfeK | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.3 | no description | compare |
| b4567 | yjjZ | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1566 | flxA | +0.3 | 1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b3686 | ibpB | +0.3 | 2.2 | heat shock chaperone (NCBI) | compare |
| b4653 | yicT | +0.3 | 1.0 | no description | compare |
| b3625 | rfaY | +0.3 | 1.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3396 | mrcA | +0.3 | 2.4 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1959 | yedA | +0.3 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b1790 | yeaM | +0.3 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0323 | yahI | +0.3 | 1.5 | predicted carbamate kinase-like protein (NCBI) | compare |
| b4573 | insZ | +0.3 | 1.3 | no description | compare |
| b2491 | hyfR | +0.3 | 1.8 | putative 2-component regulator, interaction with sigma 54 (VIMSS) | compare |
| b1097 | yceG | +0.3 | 1.6 | predicted aminodeoxychorismate lyase (NCBI) | compare |
| b0521 | ybcF | +0.3 | 1.8 | predicted carbamate kinase (NCBI) | compare |
| b2490 | b2490 | +0.2 | 1.6 | putative protein processing element (VIMSS) | compare |
| b2743 | pcm | +0.2 | 1.7 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b2587 | kgtP | +0.2 | 1.7 | alpha-ketoglutarate transporter (NCBI) | compare |
| b0754 | aroG | +0.2 | 1.9 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | compare |
| b1365 | ynaK | +0.2 | 1.8 | Rac prophage; conserved protein (NCBI) | compare |
| b4656 | yjhY | +0.2 | 1.6 | no description | compare |
| b3555 | yiaG | +0.2 | 1.0 | predicted transcriptional regulator (NCBI) | compare |
| b1480 | sra | +0.2 | 0.7 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b0464 | acrR | +0.2 | 2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2195 | ccmG | +0.2 | 0.7 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b3483 | yhhH | +0.2 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b1764 | selD | +0.2 | 1.3 | selenophosphate synthetase (NCBI) | compare |
| b2284 | nuoF | +0.2 | 1.6 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1677 | lpp | +0.2 | 0.8 | murein lipoprotein (NCBI) | compare |
| b2445 | yffN | +0.2 | 0.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2622 | intA | +0.2 | 1.7 | CP4-57 prophage; integrase (NCBI) | compare |
| b0393 | rdgC | +0.2 | 1.9 | recombination associated protein (NCBI) | compare |
| b4280 | yjhC | +0.2 | 1.9 | putative dehydrogenase (VIMSS) | compare |