| | gene | name | fitness | t score | description | |
|---|
| b2934 | cmtB | +1.2 | 1.0 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0630 | lipB | +1.2 | 2.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1185 | dsbB | +1.2 | 7.0 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3860 | dsbA | +0.9 | 8.3 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0798 | ybiA | +0.8 | 2.3 | hypothetical protein (NCBI) | compare |
| b1195 | ymgE | +0.8 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b1348 | lar | +0.7 | 2.1 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1476 | fdnI | +0.7 | 1.3 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1332 | ynaJ | +0.7 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b1506 | yneL | +0.7 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b1831 | proQ | +0.6 | 3.1 | putative solute/DNA competence effector (NCBI) | compare |
| b4045 | yjbJ | +0.6 | 2.7 | predicted stress response protein (NCBI) | compare |
| b1361 | ydaW | +0.6 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b4418 | sraB | +0.6 | 1.3 | unknown RNA (NCBI) | compare |
| b1739 | osmE | +0.6 | 2.8 | DNA-binding transcriptional activator (NCBI) | compare |
| b4480 | hdfR | +0.6 | 4.5 | transcriptional regulator HdfR (NCBI) | compare |
| b1882 | cheY | +0.6 | 0.7 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4520 | ymgF | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b2616 | recN | +0.5 | 4.5 | recombination and repair protein (NCBI) | compare |
| b1954 | dsrA | +0.5 | 2.6 | regulatory antisense RNA (NCBI) | compare |
| b2209 | eco | +0.5 | 1.3 | ecotin precursor (NCBI) | compare |
| b3512 | GadE | +0.5 | 3.4 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1610 | tus | +0.5 | 3.1 | DNA replication terminus site-binding protein (NCBI) | compare |
| b0998 | torD | +0.5 | 1.2 | chaperone protein TorD (NCBI) | compare |
| b1179 | ycgL | +0.5 | 2.6 | conserved protein (NCBI) | compare |
| b1205 | ychH | +0.5 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b2156 | lysP | +0.5 | 4.4 | lysine transporter (NCBI) | compare |
| b3764 | yifE | +0.5 | 3.5 | hypothetical protein (NCBI) | compare |
| b1357 | ydaS | +0.5 | 1.6 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4676 | yoaK | +0.5 | 0.5 | expressed protein (RefSeq) | compare |
| b1387 | maoC | +0.5 | 2.8 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1382 | ynbE | +0.5 | 1.6 | predicted lipoprotein (NCBI) | compare |
| b2915 | yqfE | +0.5 | 2.4 | hypothetical protein (RefSeq) | compare |
| b1824 | yobF | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | +0.5 | 2.0 | cytochrome b(561) (VIMSS) | compare |
| b1448 | yncA | +0.5 | 1.2 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b0730 | mngR | +0.5 | 1.0 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1823 | cspC | +0.5 | 2.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b1724 | ydiZ | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b4571 | wbbL | +0.5 | 2.4 | no description | compare |
| b4431 | rprA | +0.5 | 1.4 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b0542 | renD | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3082 | ygjM | +0.5 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4505 | insX | +0.5 | 1.1 | predicted IS protein (RefSeq) | compare |
| b1434 | ydcN | +0.5 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1936 | intG | +0.4 | 0.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1058 | yceO | +0.4 | 0.2 | hypothetical protein (NCBI) | compare |
| b1950 | fliR | +0.4 | 2.1 | flagellar biosynthesis protein R (NCBI) | compare |
| b4642 | yoeD | +0.4 | 1.7 | no description | compare |
| b1408 | b1408 | +0.4 | 3.0 | probable enzyme (VIMSS) | compare |
| b0641 | rlpB | +0.4 | 1.4 | minor lipoprotein (NCBI) | compare |
| b4631 | ykgQ | +0.4 | 1.7 | no description | compare |
| b0183 | rnhB | +0.4 | 2.7 | ribonuclease HII (NCBI) | compare |
| b1442 | ydcU | +0.4 | 2.8 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b3863 | polA | +0.4 | 0.7 | DNA polymerase I (NCBI) | compare |
| b1415 | aldA | +0.4 | 3.2 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b1485 | ddpC | +0.4 | 2.5 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b0843 | ybjH | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2195 | ccmG | +0.4 | 2.0 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1566 | flxA | +0.4 | 1.9 | Qin prophage; predicted protein (NCBI) | compare |
| b1305 | pspB | +0.4 | 1.7 | phage shock protein B (NCBI) | compare |
| b1613 | manA | +0.4 | 1.5 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2998 | yghW | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b4410 | ecnA | +0.4 | 1.2 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b1395 | paaH | +0.4 | 3.3 | 3-hydroxybutyryl-CoA dehydrogenase (NCBI) | compare |
| b2673 | nrdH | +0.4 | 2.4 | glutaredoxin-like protein (NCBI) | compare |
| b1152 | ymfP | +0.4 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b0191 | yaeJ | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b1753 | ynjA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1238 | tdk | +0.4 | 2.7 | thymidine kinase (NCBI) | compare |
| b1421 | trg | +0.4 | 2.8 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1478 | adhP | +0.4 | 1.6 | alcohol dehydrogenase (VIMSS) | compare |
| b1160 | elbA | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b1742 | b1742 | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0623 | cspE | +0.4 | 1.2 | cold shock protein E (NCBI) | compare |
| b2741 | rpoS | +0.4 | 2.7 | RNA polymerase sigma factor (NCBI) | compare |
| b4546 | ypeB | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1686 | ydiI | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b4686 | yshB | +0.4 | 2.1 | expressed protein (RefSeq) | compare |
| b1045 | ymdB | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1731 | cedA | +0.4 | 1.4 | cell division modulator (RefSeq) | compare |
| b1394 | paaG | +0.4 | 2.1 | enoyl-CoA hydratase (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4593 | ymgI | +0.3 | 0.4 | hypothetical protein (RefSeq) | compare |
| b4515 | ybgT | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1977 | asnT | +0.3 | 1.6 | tRNA-Asn (NCBI) | compare |
| b3627 | rfaI | +0.3 | 2.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1233 | ychJ | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b4532 | yncN | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1930 | yedF | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b2261 | menC | +0.3 | 2.5 | O-succinylbenzoate synthase (NCBI) | compare |
| b3790 | rffC | +0.3 | 2.4 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4551 | yheV | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4640 | yoeG | +0.3 | 1.2 | no description | compare |
| b1414 | ydcF | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b2217 | rcsB | +0.3 | 2.6 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b4460 | araH | +0.3 | 1.2 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b1397 | paaJ | +0.3 | 2.8 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b3037 | ygiB | +0.3 | 2.5 | conserved outer membrane protein (RefSeq) | compare |
| b1383 | ydbL | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1480 | sra | +0.3 | 0.8 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b0946 | ycbW | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2016 | yeeZ | +0.3 | 2.1 | predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b1143 | ymfI | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2071 | yegJ | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b2433 | b2433 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2684 | mprA | +0.3 | 1.9 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4438 | cyaR | +0.3 | 1.4 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b2897 | ygfY | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1431 | ydcL | +0.3 | 1.6 | predicted lipoprotein (NCBI) | compare |
| b2096 | gatY | +0.3 | 1.4 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1381 | ydbH | +0.3 | 2.6 | hypothetical protein (NCBI) | compare |
| b0678 | nagB | +0.3 | 1.6 | glucosamine-6-phosphate deaminase (NCBI) | compare |
| b4613 | dinQ | +0.3 | 1.4 | Damage inducible, function unknown (RefSeq) | compare |
| b1085 | b1085 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b3625 | rfaY | +0.3 | 1.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4481 | rffT | +0.3 | 2.1 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1335 | ogt | +0.3 | 1.7 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b4609 | ryfD | +0.3 | 1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b2587 | kgtP | +0.3 | 2.0 | alpha-ketoglutarate transporter (NCBI) | compare |
| b4181 | yjfI | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b0848 | ybjM | +0.3 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1449 | yncB | +0.3 | 2.1 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (RefSeq) | compare |
| b4603 | rseX | +0.3 | 0.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b4492 | ydbA | +0.3 | 2.4 | no description | compare |
| b3787 | rffD | +0.3 | 2.6 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1053 | mdtG | +0.3 | 1.8 | predicted drug efflux system (NCBI) | compare |
| b0178 | hlpA | +0.3 | 1.8 | periplasmic chaperone (NCBI) | compare |
| b1410 | ynbC | +0.3 | 2.0 | predicted hydrolase (NCBI) | compare |
| b4369 | leuP | +0.3 | 1.1 | tRNA-Leu (NCBI) | compare |
| b1507 | hipA | +0.3 | 1.3 | regulator with hipB (NCBI) | compare |
| b1961 | dcm | +0.3 | 0.8 | DNA cytosine methylase (NCBI) | compare |
| b1874 | cutC | +0.3 | 0.7 | copper homeostasis protein (NCBI) | compare |
| b2419 | yfeK | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1315 | ycjS | +0.3 | 2.1 | predicted oxidoreductase, NADH-binding (NCBI) | compare |
| b3238 | yhcN | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1698 | ydiR | +0.3 | 1.7 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b4444 | rygA | +0.3 | 1.6 | unknown RNA (NCBI) | compare |
| b3628 | rfaB | +0.3 | 2.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1639 | ydhA | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0933 | ssuB | +0.3 | 1.3 | alkanesulfonate transporter subunit (NCBI) | compare |
| b1339 | abgR | +0.3 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0851 | nfsA | +0.3 | 1.6 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b0645 | ybeR | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4687 | shoB | +0.3 | 1.4 | toxic membrane protein (RefSeq) | compare |
| b2765 | ygcM | +0.3 | 1.1 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b0122 | yacC | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1390 | paaC | +0.3 | 1.8 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b2208 | napF | +0.3 | 1.5 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b3786 | rffE | +0.3 | 2.4 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b2636 | b2636 | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1399 | paaX | +0.3 | 1.7 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b4699 | fnrS | +0.3 | 0.4 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1384 | feaR | +0.3 | 2.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2010 | dacD | +0.3 | 1.9 | penicillin binding protein 6b (VIMSS) | compare |
| b0521 | ybcF | +0.3 | 1.8 | predicted carbamate kinase (NCBI) | compare |
| b1184 | umuC | +0.3 | 2.2 | DNA polymerase V subunit UmuC (NCBI) | compare |
| b3248 | yhdE | +0.3 | 2.2 | Maf-like protein (NCBI) | compare |
| b1520 | b1520 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1919 | yedO | +0.3 | 0.7 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1695 | b1695 | +0.3 | 1.6 | putative oxidoreductase (VIMSS) | compare |
| b4503 | yafF | +0.3 | 0.4 | no description | compare |
| b2859 | ygeO | +0.3 | 0.9 | hypothetical protein (RefSeq) | compare |
| b1795 | yeaQ | +0.3 | 1.4 | conserved inner membrane protein (NCBI) | compare |
| b0617 | citD | +0.3 | 0.7 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2306 | hisP | +0.3 | 2.0 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b4389 | radA | +0.3 | 2.2 | predicted repair protein (NCBI) | compare |
| b2212 | alkB | +0.3 | 1.4 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b0819 | ybiS | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1976 | b1976 | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0613 | citG | +0.3 | 1.3 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b1407 | ydbD | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3163 | nlpI | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b0051 | ksgA | +0.3 | 1.4 | dimethyladenosine transferase (NCBI) | compare |
| b0632 | dacA | +0.3 | 1.8 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3613 | yibP | +0.3 | 0.8 | putative membrane protein (VIMSS) | compare |
| b1350 | recE | +0.3 | 2.0 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b4656 | yjhY | +0.3 | 1.4 | no description | compare |
| b3009 | yghB | +0.3 | 1.9 | conserved inner membrane protein (NCBI) | compare |
| b2579 | yfiD | +0.2 | 0.8 | pyruvate formate lyase subunit (NCBI) | compare |
| b4538 | yoeF | +0.2 | 0.7 | hypothetical protein (RefSeq) | compare |
| b1727 | yniC | +0.2 | 1.1 | predicted hydrolase (NCBI) | compare |
| b4345 | mcrC | +0.2 | 0.5 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b0213 | yafS | +0.2 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0101 | yacG | +0.2 | 1.4 | zinc-binding protein (NCBI) | compare |
| b1945 | fliM | +0.2 | 1.8 | flagellar motor switch protein M (NCBI) | compare |
| b1377 | ompN | +0.2 | 1.6 | outer membrane pore protein N, non-specific (NCBI) | compare |
| b2997 | hybO | +0.2 | 1.9 | hydrogenase 2, small subunit (NCBI) | compare |
| b2870 | ygeW | +0.2 | 1.9 | hypothetical protein (NCBI) | compare |
| b1386 | tynA | +0.2 | 1.6 | tyramine oxidase, copper-requiring (NCBI) | compare |
| b0464 | acrR | +0.2 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4218 | ytfL | +0.2 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b2200 | ccmB | +0.2 | 1.6 | heme exporter subunit (NCBI) | compare |
| b3791 | rffA | +0.2 | 1.8 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b2486 | hyfF | +0.2 | 1.9 | NADH dehydrogenase subunit N (NCBI) | compare |
| b1424 | mdoD | +0.2 | 1.7 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b3686 | ibpB | +0.2 | 2.0 | heat shock chaperone (NCBI) | compare |