| | gene | name | fitness | t score | description | |
|---|
| b2934 | cmtB | +1.5 | 1.3 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1361 | ydaW | +1.1 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0798 | ybiA | +0.9 | 3.5 | hypothetical protein (NCBI) | compare |
| b0730 | mngR | +0.9 | 1.9 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4533 | ynfO | +0.9 | 2.4 | Qin prophage; predicted protein (NCBI) | compare |
| b1882 | cheY | +0.8 | 0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1332 | ynaJ | +0.7 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b4603 | rseX | +0.7 | 0.9 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0542 | renD | +0.6 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4699 | fnrS | +0.6 | 1.0 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1195 | ymgE | +0.6 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b0630 | lipB | +0.6 | 1.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1861 | ruvA | +0.6 | 1.1 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1185 | dsbB | +0.6 | 3.9 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1765 | ydjA | +0.6 | 1.0 | predicted oxidoreductase (NCBI) | compare |
| b1143 | ymfI | +0.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1476 | fdnI | +0.6 | 1.0 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b3860 | dsbA | +0.6 | 5.2 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b4701 | sokX | +0.6 | 1.1 | sok-related sRNA, function unknown (RefSeq) | compare |
| b4503 | yafF | +0.6 | 1.0 | no description | compare |
| b0880 | cspD | +0.5 | 2.1 | cold shock protein homolog (NCBI) | compare |
| b1348 | lar | +0.5 | 1.4 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4538 | yoeF | +0.5 | 1.1 | hypothetical protein (RefSeq) | compare |
| b4410 | ecnA | +0.5 | 1.4 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b3863 | polA | +0.5 | 0.7 | DNA polymerase I (NCBI) | compare |
| b4642 | yoeD | +0.5 | 1.2 | no description | compare |
| b1506 | yneL | +0.5 | 1.0 | predicted transcriptional regulator (NCBI) | compare |
| b3790 | rffC | +0.5 | 3.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b1831 | proQ | +0.4 | 1.8 | putative solute/DNA competence effector (NCBI) | compare |
| b1848 | yebG | +0.4 | 1.2 | conserved protein regulated by LexA (NCBI) | compare |
| b1357 | ydaS | +0.4 | 1.4 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1530 | marR | +0.4 | 1.9 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b4431 | rprA | +0.4 | 1.6 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1085 | b1085 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1758 | b1758 | +0.4 | 1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b1977 | asnT | +0.4 | 1.7 | tRNA-Asn (NCBI) | compare |
| b4686 | yshB | +0.4 | 2.4 | expressed protein (RefSeq) | compare |
| b1205 | ychH | +0.4 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b4481 | rffT | +0.4 | 2.9 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0843 | ybjH | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1573 | ydfC | +0.4 | 0.5 | Qin prophage; predicted protein (RefSeq) | compare |
| b3791 | rffA | +0.4 | 2.8 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b1686 | ydiI | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b3627 | rfaI | +0.4 | 3.1 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3623 | rfaK | +0.4 | 1.3 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b2510 | b2510 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1811 | yoaH | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1175 | minD | +0.4 | 1.7 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0946 | ycbW | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1565 | ydfV | +0.4 | 1.8 | Qin prophage; predicted protein (NCBI) | compare |
| b1355 | b1355 | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1698 | ydiR | +0.4 | 1.6 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b2445 | yffN | +0.4 | 1.2 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1252 | tonB | +0.4 | 1.5 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b4416 | rybA | +0.4 | 1.0 | unknown RNA (NCBI) | compare |
| b0846 | ybjK | +0.4 | 2.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1727 | yniC | +0.4 | 1.1 | predicted hydrolase (NCBI) | compare |
| b1566 | flxA | +0.3 | 1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b3794 | rffM | +0.3 | 2.7 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1426 | ydcH | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2504 | yfgG | +0.3 | 0.8 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b0183 | rnhB | +0.3 | 2.3 | ribonuclease HII (NCBI) | compare |
| b4045 | yjbJ | +0.3 | 1.7 | predicted stress response protein (NCBI) | compare |
| b2058 | wcaB | +0.3 | 0.8 | predicted acyl transferase (NCBI) | compare |
| b4360 | yjjA | +0.3 | 2.1 | putative glycoprotein/receptor (VIMSS) | compare |
| b3979 | thrT | +0.3 | 0.1 | tRNA-Thr (NCBI) | compare |
| b3250 | mreC | +0.3 | 1.3 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b4660 | yhiL | +0.3 | 0.2 | no description | compare |
| b0323 | yahI | +0.3 | 2.1 | predicted carbamate kinase-like protein (NCBI) | compare |
| b4704 | arrS | +0.3 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2398 | yfeC | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4551 | yheV | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1764 | selD | +0.3 | 2.0 | selenophosphate synthetase (NCBI) | compare |
| b2187 | yejL | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1387 | maoC | +0.3 | 1.8 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b3786 | rffE | +0.3 | 2.8 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b1959 | yedA | +0.3 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b1930 | yedF | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b0456 | ybaA | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b3483 | yhhH | +0.3 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b2165 | yeiN | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1399 | paaX | +0.3 | 1.8 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b1179 | ycgL | +0.3 | 1.2 | conserved protein (NCBI) | compare |
| b4415 | hokE | +0.3 | 1.9 | toxic polypeptide, small (NCBI) | compare |
| b1152 | ymfP | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1408 | b1408 | +0.3 | 1.6 | probable enzyme (VIMSS) | compare |
| b1557 | cspB | +0.3 | 0.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.1 | no description | compare |
| b0209 | yafD | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b2264 | menD | +0.3 | 2.6 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b2356 | yfdM | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2419 | yfeK | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b0802 | ybiJ | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b4527 | b1354 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0819 | ybiS | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b2193 | narP | +0.3 | 2.0 | DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI) | compare |
| b0296 | ykgM | +0.3 | 1.7 | 50S ribosomal protein L31 (NCBI) | compare |
| b1792 | yeaO | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2587 | kgtP | +0.3 | 1.8 | alpha-ketoglutarate transporter (NCBI) | compare |
| b3961 | oxyR | +0.3 | 2.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2208 | napF | +0.3 | 1.4 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b2399 | yfeD | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1590 | ynfH | +0.3 | 1.9 | oxidoreductase, membrane subunit (NCBI) | compare |
| b1103 | ycfF | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1951 | rcsA | +0.3 | 0.7 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b1790 | yeaM | +0.3 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1954 | dsrA | +0.3 | 1.2 | regulatory antisense RNA (NCBI) | compare |
| b0393 | rdgC | +0.3 | 2.3 | recombination associated protein (NCBI) | compare |
| b2051 | wcaH | +0.3 | 0.9 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b2488 | hyfH | +0.3 | 1.3 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b1511 | ydeV | +0.3 | 1.2 | putative kinase (VIMSS) | compare |
| b0381 | ddlA | +0.3 | 2.2 | D-alanylalanine synthetase (NCBI) | compare |
| b3784 | rfe | +0.3 | 2.4 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b2287 | nuoB | +0.3 | 1.3 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0114 | aceE | +0.3 | 0.6 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b4444 | rygA | +0.3 | 1.3 | unknown RNA (NCBI) | compare |
| b1520 | b1520 | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4363 | yjjB | +0.3 | 1.4 | conserved inner membrane protein (RefSeq) | compare |
| b4609 | ryfD | +0.3 | 1.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b1562 | hokD | +0.3 | 1.2 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b0521 | ybcF | +0.3 | 1.5 | predicted carbamate kinase (NCBI) | compare |
| b1114 | mfd | +0.3 | 2.1 | transcription-repair coupling factor (NCBI) | compare |
| b2782 | chpA | +0.3 | 1.6 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b0101 | yacG | +0.3 | 0.9 | zinc-binding protein (NCBI) | compare |
| b3698 | yidB | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1948 | fliP | +0.3 | 1.7 | flagellar biosynthesis protein P (NCBI) | compare |
| b1075 | flgD | +0.3 | 1.3 | flagellar basal body rod modification protein D (NCBI) | compare |
| b4395 | ytjC | +0.3 | 1.7 | phosphoglycerate mutase (NCBI) | compare |
| b4558 | yifL | +0.3 | 1.3 | predicted lipoprotein (NCBI) | compare |
| b3100 | yqjK | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1260 | trpA | +0.3 | 1.8 | tryptophan synthase subunit alpha (NCBI) | compare |
| b4331 | yjiI | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1013 | ycdC | +0.3 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2486 | hyfF | +0.3 | 1.7 | NADH dehydrogenase subunit N (NCBI) | compare |
| b1751 | ydjY | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3950 | frwB | +0.3 | 1.1 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b2023 | hisH | +0.3 | 1.5 | imidazole glycerol phosphate synthase subunit HisH (NCBI) | compare |
| b4000 | hupA | +0.2 | 1.3 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b2388 | glk | +0.2 | 1.6 | glucokinase (NCBI) | compare |
| b2014 | yeeF | +0.2 | 1.7 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1038 | csgF | +0.2 | 1.2 | predicted transport protein (NCBI) | compare |
| b3725 | pstB | +0.2 | 0.1 | phosphate transporter subunit (NCBI) | compare |
| b3163 | nlpI | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b0641 | rlpB | +0.2 | 1.2 | minor lipoprotein (NCBI) | compare |
| b4381 | deoC | +0.2 | 1.2 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b2156 | lysP | +0.2 | 2.1 | lysine transporter (NCBI) | compare |
| b4367 | fhuF | +0.2 | 1.9 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b1034 | ycdX | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b4614 | sokA | +0.2 | 1.2 | no description | compare |
| b4032 | malG | +0.2 | 1.9 | maltose transporter subunit (NCBI) | compare |
| b1699 | ydiS | +0.2 | 1.1 | predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI) | compare |
| b4034 | malE | +0.2 | 2.0 | maltose ABC transporter periplasmic protein (NCBI) | compare |
| b1325 | ycjG | +0.2 | 1.1 | putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) | compare |
| b1345 | intR | +0.2 | 2.0 | Rac prophage; integrase (NCBI) | compare |
| b4445 | omrB | +0.2 | 1.0 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b1233 | ychJ | +0.2 | 1.4 | hypothetical protein (NCBI) | compare |
| b4656 | yjhY | +0.2 | 1.4 | no description | compare |
| b1446 | ydcY | +0.2 | 1.1 | hypothetical protein (NCBI) | compare |
| b1515 | lsrD | +0.2 | 1.0 | AI2 transporter (NCBI) | compare |
| b2673 | nrdH | +0.2 | 1.4 | glutaredoxin-like protein (NCBI) | compare |
| b3889 | yiiE | +0.2 | 0.9 | predicted transcriptional regulator (RefSeq) | compare |
| b0192 | nlpE | +0.2 | 1.7 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b3686 | ibpB | +0.2 | 1.7 | heat shock chaperone (NCBI) | compare |
| b1299 | puuR | +0.2 | 1.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3787 | rffD | +0.2 | 1.9 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1462 | b1462 | +0.2 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b4573 | insZ | +0.2 | 1.3 | no description | compare |
| b0443 | ybaW | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b1308 | pspE | +0.2 | 1.6 | thiosulfate:cyanide sulfurtransferase (rhodanese) (NCBI) | compare |
| b1955 | yedP | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b1940 | fliH | +0.2 | 1.6 | flagellar biosynthesis; export of flagellar proteins? (VIMSS) | compare |
| b1753 | ynjA | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b3396 | mrcA | +0.2 | 2.2 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b1794 | yeaP | +0.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4358 | yjjN | +0.2 | 1.8 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (RefSeq) | compare |
| b2998 | yghW | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b3472 | b3472 | +0.2 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1553 | ydfP | +0.2 | 0.6 | Qin prophage; conserved protein (NCBI) | compare |
| b4519 | icdC | +0.2 | 1.2 | no description | compare |
| b3291 | mscL | +0.2 | 1.8 | large-conductance mechanosensitive channel (NCBI) | compare |
| b2426 | ucpA | +0.2 | 0.9 | putative oxidoreductase (VIMSS) | compare |
| b1742 | b1742 | +0.2 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1883 | cheB | +0.2 | 1.0 | chemotaxis-specific methylesterase (NCBI) | compare |
| b1749 | xthA | +0.2 | 1.1 | exonuclease III (NCBI) | compare |
| b4658 | yghX | +0.2 | 1.8 | no description | compare |
| b1380 | ldhA | +0.2 | 1.0 | D-lactate dehydrogenase (NCBI) | compare |
| b0611 | rna | +0.2 | 1.5 | ribonuclease I (NCBI) | compare |
| b2302 | yfcG | +0.2 | 1.5 | predicted glutathione S-transferase (NCBI) | compare |
| b0606 | ahpF | +0.2 | 1.6 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | compare |
| b0571 | cusR | +0.2 | 1.7 | DNA-binding response regulator in two-component regulatory system with CusS (NCBI) | compare |
| b1962 | yedJ | +0.2 | 1.5 | predicted phosphohydrolase (NCBI) | compare |
| b0550 | rusA | +0.2 | 1.2 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b3628 | rfaB | +0.2 | 1.9 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b4376 | osmY | +0.2 | 1.5 | periplasmic protein (NCBI) | compare |
| b0756 | galM | +0.2 | 1.3 | galactose-1-epimerase (mutarotase) (NCBI) | compare |
| b2250 | b2250 | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1591 | b1591 | +0.2 | 0.8 | putative oxidoreductase component (VIMSS) | compare |
| b2381 | ypdB | +0.2 | 1.3 | predicted response regulator in two-component system withYpdA (NCBI) | compare |
| b4561 | insM | +0.2 | 1.3 | transposase (RefSeq) | compare |
| b2481 | hyfA | +0.2 | 1.5 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |