Experiment set41IT044 for Pseudomonas putida KT2440

Compare to:

P. putida PUT 7 MOI 1

200 most important genes:

  gene name fitness t score description  
PP_2511 -4.5 -3.0 conserved protein of unknown function compare
PP_2764 -4.5 -2.8 FMN reductase (NADPH) compare
PP_2103 -4.4 -3.1 conserved protein of unknown function compare
PP_1269 -4.4 -1.5 Universal stress protein family compare
PP_3043 -4.4 -2.5 conserved protein of unknown function compare
PP_0630 -4.3 -1.4 DNA gyrase inhibitor YacG compare
PP_4223 -4.1 -2.3 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3637 -4.0 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3338 -3.9 -4.5 putative cytochrome bd-type quinol oxidase compare
PP_3332 -3.7 -2.9 putative cytochrome c-type protein compare
PP_5571 -3.7 -1.2 conserved protein of unknown function compare
PP_t10 -3.5 -1.6 tRNA-Pro compare
PP_3726 -3.4 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_5604 -3.3 -1.9 putative subtilisin-like serine protease compare
PP_2720 -3.2 -1.1 conserved protein of unknown function compare
PP_0989 -3.2 -3.1 glycine cleavage system H protein 1 compare
PP_3730 -3.2 -1.9 Transcriptional regulatory protein AruR compare
PP_1824 -3.2 -1.4 Smr domain protein compare
PP_2313 -3.1 -1.4 conserved membrane protein of unknown function compare
PP_2958 -3.0 -3.4 Glutaredoxin compare
PP_4902 -3.0 -2.0 Oligoribonuclease compare
PP_1480 -2.9 -4.1 conserved protein of unknown function compare
PP_5008 -2.8 -1.3 Poly granule-associated protein compare
PP_5748 -2.8 -1.2 cytochrome c heme lyase subunit compare
PP_2750 -2.8 -2.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3085 -2.8 -4.6 putative Transmembrane sensor compare
PP_5475 -2.8 -1.3 conserved protein of unknown function compare
PP_0874 -2.8 -2.3 conserved protein of unknown function compare
PP_5471 -2.7 -1.2 putative response regulator receiver protein compare
PP_3506 -2.7 -3.1 Magnesium chelatase, subunit ChII compare
PP_1097 -2.7 -1.2 Methionine--tRNA ligase compare
PP_5528 -2.7 -1.7 conserved protein of unknown function compare
PP_2360 -2.7 -2.8 putative type 1 pili subunit CsuA/B protein compare
PP_3314 -2.6 -3.1 Heat shock protein, HSP20 family compare
PP_2765 -2.5 -1.8 putative Sulfonate monooxygenase MsuD compare
PP_1214 -2.5 -2.5 putative transcriptional regulatory protein compare
PP_2847 -2.5 -1.2 Urease accessory protein UreJ compare
PP_3315 -2.5 -2.2 conserved membrane protein of unknown function compare
PP_2640 -2.4 -3.0 Acetyltransferase, GNAT family compare
PP_2900 -2.4 -2.4 conserved protein of unknown function compare
PP_5456 -2.4 -1.9 conserved protein of unknown function compare
PP_2118 -2.4 -2.8 conserved protein of unknown function compare
PP_3287 -2.4 -3.8 transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family compare
PP_5473 -2.3 -1.7 putative transcriptional regulator, LuxR family compare
PP_2016 -2.3 -2.7 conserved protein of unknown function compare
PP_5553 -2.3 -5.6 conserved protein of unknown function compare
PP_3946 -2.3 -1.0 HTH-type transcriptional repressor NicR compare
PP_2725 -2.3 -2.2 Protease PfpI compare
PP_2403 -2.2 -1.0 Chemotaxis protein CheY compare
PP_2575 -2.2 -1.4 conserved exported protein of unknown function compare
PP_2280 -2.2 -1.7 conserved protein of unknown function compare
PP_4957 -2.1 -3.3 conserved protein of unknown function compare
PP_4247 -2.1 -1.4 Exonuclease compare
PP_2907 -2.1 -2.5 DNA-binding response regulator compare
PP_1812 -2.1 -1.9 conserved protein of unknown function compare
PP_4122 -2.1 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1781 -2.1 -9.8 putative O-acyltransferase compare
PP_1021 -2.1 -4.2 DNA-binding transcriptional regulator compare
PP_5022 -2.1 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_4054 -2.1 -2.2 conserved protein of unknown function compare
PP_2388 -2.1 -2.9 Transporter, LysE family compare
PP_1366 -2.1 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_3755 -2.1 -3.1 3-hydroxybutyryl-CoA dehydrogenase compare
PP_5600 -2.0 -1.5 conserved protein of unknown function compare
PP_1466 -2.0 -2.3 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2025 -2.0 -2.6 Exonuclease SbcD compare
PP_5483 -2.0 -1.6 conserved protein of unknown function compare
PP_4009 -2.0 -2.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_3089 -2.0 -3.1 conserved protein of unknown function compare
PP_3037 -2.0 -1.8 C4-type zinc finger protein, DksA/TraR family compare
PP_1669 -2.0 -4.0 NLP/P60 family protein compare
PP_2136 -1.9 -3.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_t29 -1.9 -1.2 tRNA-Ala compare
PP_0218 -1.9 -6.4 Sensory box protein compare
PP_3276 -1.9 -2.3 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_0963 -1.9 -3.3 putative BolA family protein compare
PP_0673 -1.9 -1.6 conserved protein of unknown function compare
PP_5201 -1.9 -2.6 conserved protein of unknown function, UPF0149 family compare
PP_3035 -1.9 -1.3 conserved protein of unknown function compare
PP_0293 -1.9 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3621 -1.9 -2.4 vanillin dehydrogenase, iorA-like component (from data) compare
PP_2785 -1.9 -2.3 conserved exported protein of unknown function compare
PP_0276 -1.8 -1.2 Transcriptional regulator, Cro/CI family compare
PP_2177 -1.8 -2.5 putative transcriptional regulator compare
PP_5533 -1.8 -1.2 conserved protein of unknown function compare
PP_1683 -1.8 -1.5 Transcriptional regulator, MarR family compare
PP_0948 -1.8 -1.4 Phosphocarrier protein HPr compare
PP_2417 -1.8 -1.8 putative Iron ABC transporter, permease protein compare
PP_2747 -1.7 -1.3 conserved protein of unknown function compare
PP_2970 -1.7 -2.1 conserved exported protein of unknown function compare
PP_3460 -1.7 -2.3 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3177 -1.7 -3.3 conserved protein of unknown function compare
PP_1892 -1.7 -1.7 conserved protein of unknown function compare
PP_1442 -1.7 -3.2 conserved protein of unknown function compare
PP_1057 -1.7 -3.4 Transcriptional regulator, PadR family compare
PP_2197 -1.6 -2.4 conserved exported protein of unknown function compare
PP_3930 -1.6 -1.3 conserved exported protein of unknown function compare
PP_4057 -1.6 -2.9 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_1605 -1.6 -1.7 Ribonuclease HII compare
PP_3056 -1.6 -2.1 putative Pyocin R2_PP, tail fiber protein compare
PP_0532 -1.6 -3.0 conserved exported protein of unknown function compare
PP_2026 -1.6 -3.5 conserved protein of unknown function compare
PP_4482 -1.6 -2.6 Transcriptional regulator, AraC family compare
PP_3081 -1.6 -2.4 conserved protein of unknown function compare
PP_2349 -1.6 -3.1 nitrite transporter, HPP family (from data) compare
PP_3492 -1.6 -2.8 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PP_2842 -1.6 -2.5 urease accessory protein compare
PP_1070 -1.6 -2.7 glutamate / aspartate ABC transporter - permease subunit compare
PP_2029 -1.6 -1.7 von Willebrand factor type A domain protein compare
PP_2547 -1.5 -2.1 Transcriptional regulator, LysR family compare
PP_2299 -1.5 -2.6 Trigger factor compare
PP_1062 -1.5 -1.5 MutT/nudix family protein compare
PP_5338 -1.5 -2.4 aspartate ammonia-lyase compare
PP_2873 -1.5 -2.5 conserved protein of unknown function, UPF0145 family compare
PP_3034 -1.5 -1.7 putative Regulator protein compare
PP_2328 -1.5 -3.2 Phosphoadenosine phosphosulfate reductase compare
PP_4262 -1.5 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2028 -1.5 -2.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1609 -1.5 -1.2 conserved protein of unknown function compare
PP_2650 -1.5 -1.3 putative 4-hydroxybutyrate dehydrogenase compare
PP_0319 -1.5 -1.4 conserved protein of unknown function compare
PP_5272 -1.5 -3.2 conserved protein of unknown function compare
PP_3891 -1.5 -2.7 conserved protein of unknown function compare
PP_2449 -1.5 -2.9 conserved protein of unknown function compare
PP_5058 -1.5 -3.4 Carboxy-terminal-processing protease compare
PP_1237 -1.4 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4364 -1.4 -3.3 putative Anti-sigma F factor antagonist compare
PP_4317 -1.4 -1.3 conserved protein of unknown function compare
PP_2414 -1.4 -1.3 conserved exported protein of unknown function compare
PP_2593 -1.4 -2.7 Ferric siderophore ABC transporter, permease protein compare
PP_0846 -1.4 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_3576 -1.4 -2.8 putative Transmembrane sensor compare
PP_5327 -1.4 -3.1 putative phosphate ABC transporter, permease subunit compare
PP_4532 -1.4 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3343 -1.4 -3.4 nickel ABC transporter permease subunit compare
PP_0274 -1.4 -1.1 putative transcriptional regulator containing HTH domain compare
PP_0401 -1.4 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_2838 -1.4 -4.3 conserved protein of unknown function compare
PP_4215 -1.4 -3.8 pyoverdine biosynthesis related protein compare
PP_4271 -1.4 -0.7 conserved protein of unknown function compare
PP_3254 -1.4 -2.4 putative Nucleosidase compare
PP_1176 -1.4 -1.1 conserved protein of unknown function compare
PP_1621 -1.4 -3.1 Protein-L-isoaspartate O-methyltransferase compare
PP_3919 -1.3 -2.8 conserved protein of unknown function compare
PP_2760 -1.3 -2.2 putative ribose transport permease protein compare
PP_2131 -1.3 -2.3 DNA-binding ATPase involved in replication compare
PP_1673 -1.3 -2.7 cobyrinate a,c-diamide synthase compare
PP_1678 -1.3 -1.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5546 -1.3 -1.4 conserved protein of unknown function compare
PP_4997 -1.3 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5554 -1.3 -2.2 protein of unknown function compare
PP_0188 -1.3 -3.8 putative Uroporphyrin-III C-methyltransferase compare
PP_3723 -1.3 -3.3 putative 2-ketoarginine decarboxylase AruI compare
PP_0087 -1.3 -1.7 conserved exported protein of unknown function compare
PP_1871 -1.3 -2.3 Protease HtpX compare
PP_5317 -1.3 -2.8 Probable chorismate pyruvate-lyase compare
PP_5594 -1.3 -1.2 conserved protein of unknown function compare
PP_2009 -1.3 -3.5 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_5520 -1.3 -1.9 conserved protein of unknown function compare
PP_4329 -1.3 -1.0 FlhB domain protein compare
PP_1926 -1.3 -2.0 putative phosphotyrosine-protein phosphatase compare
PP_5591 -1.3 -2.7 conserved protein of unknown function compare
PP_5592 -1.3 -3.2 conserved protein of unknown function compare
PP_3938 -1.3 -1.4 conserved protein of unknown function compare
PP_4669 -1.3 -1.4 OmpA family protein compare
PP_5313 -1.3 -1.3 DNA-binding protein HU-alpha compare
PP_1658 -1.3 -2.2 conserved protein of unknown function compare
PP_2406 -1.3 -2.9 putative quinate/shikimate dehydrogenase compare
PP_1051 -1.3 -1.0 Type II secretion pathway protein XcpV compare
PP_3279 -1.3 -3.6 phenylacetate-CoA ligase compare
PP_5260 -1.3 -3.2 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_3495 -1.2 -3.0 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_3672 -1.2 -1.4 conserved protein of unknown function compare
PP_2903 -1.2 -1.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5597 -1.2 -1.6 conserved protein of unknown function compare
PP_t11 -1.2 -1.4 tRNA-Lys compare
PP_5350 -1.2 -2.2 Transcriptional regulator, RpiR family compare
PP_2715 -1.2 -2.0 ArsH protein compare
PP_2541 -1.2 -2.3 Transcriptional factor-related protein compare
PP_1473 -1.2 -1.5 conserved protein of unknown function compare
PP_4994 -1.2 -0.8 conserved protein of unknown function compare
PP_5552 -1.2 -1.3 conserved protein of unknown function compare
PP_2880 -1.2 -0.9 Transcriptional regulator, TetR family compare
PP_0706 -1.2 -3.7 fused O(6)-alkylguanine DNA alkyltransferase - transcriptional activator compare
PP_3471 -1.2 -2.4 conserved protein of unknown function compare
PP_2545 -1.2 -2.0 trans-aconitate methyltransferase compare
PP_2669 -1.2 -2.5 putative Outer membrane protein compare
PP_0986 -1.2 -2.8 aminomethyltransferase compare
PP_4782 -1.2 -2.5 Phosphomethylpyrimidine kinase compare
PP_2145 -1.2 -1.5 beta-N-acetylglucosaminidase compare
PP_1397 -1.2 -2.1 conserved protein of unknown function compare
PP_3883 -1.2 -1.5 putative Phage holin compare
PP_2402 -1.2 -0.8 putative Sensor histidine kinase compare
PP_3267 -1.2 -2.8 putative Clp protease compare
PP_5497 -1.2 -3.4 conserved protein of unknown function with rhs repeat-associated core domain compare
PP_3344 -1.2 -2.7 nickel ABC transporter permease subunit compare
PP_4163 -1.2 -3.0 conserved exported protein of unknown function compare
PP_4964 -1.2 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1534 -1.2 -1.6 conserved protein of unknown function compare
PP_0719 -1.2 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare


Specific Phenotypes

For 11 genes in this experiment