Experiment set41IT044 for Pseudomonas putida KT2440
P. putida PUT 7 MOI 1
Group: phageMedia: LB_plus_SM_buffer + Kan (50 ug/ml)
Culturing: Putida_ML5, 48 well microplate; Epoch2, Aerobic, at 30 (C), shaken=double orbital, continuous, 205cpm
By: Vivek on 1/9/23
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 11 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial UvrD and related helicases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid metabolism
- Purine metabolism
- Lysine degradation
- Tryptophan metabolism
- Lipopolysaccharide biosynthesis
- Benzoate degradation via CoA ligation
- Folate biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-lysine degradation IV | 5 | 5 | 1 |
| L-lysine degradation X | 6 | 5 | 1 |
| superpathway of L-lysine degradation | 43 | 23 | 1 |