Experiment set41IT035 for Pseudomonas putida KT2440

Compare to:

P. putida compost MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_1781 -2.4 -16.8 putative O-acyltransferase compare
PP_0846 -2.0 -2.4 DnaK-like molecular chaperone specific for IscU compare
PP_1654 -2.0 -3.0 cysteine synthase B compare
PP_1734 -1.8 -4.4 Probable septum site-determining protein MinC compare
PP_0164 -1.7 -6.3 conserved protein of unknown function compare
PP_2414 -1.7 -1.6 conserved exported protein of unknown function compare
PP_4379 -1.5 -4.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5338 -1.4 -5.3 aspartate ammonia-lyase compare
PP_0833 -1.4 -2.1 queuine tRNA-ribosyltransferase compare
PP_0719 -1.3 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4004 -1.3 -4.5 DNA translocase FtsK compare
PP_4700 -1.2 -2.6 pantothenate synthetase compare
PP_4528 -1.2 -3.0 conserved protein of unknown function compare
PP_1999 -1.2 -1.9 membrane protein required for colicin V production compare
PP_0218 -1.2 -5.6 Sensory box protein compare
PP_3730 -1.1 -2.4 Transcriptional regulatory protein AruR compare
PP_0063 -1.1 -3.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4199 -1.1 -1.6 putative Lipoprotein compare
PP_4910 -1.1 -3.1 conserved protein of unknown function compare
PP_1097 -1.1 -2.1 Methionine--tRNA ligase compare
PP_1493 -1.1 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4902 -1.0 -2.7 Oligoribonuclease compare
PP_0914 -1.0 -7.2 GGDEF domain protein compare
PP_1468 -1.0 -2.7 Tyrosine recombinase XerD compare
PP_2044 -1.0 -1.0 conserved inner membrane protein of unknown function compare
PP_1215 -1.0 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_2379 -1.0 -3.9 putative cytochrome oxidase biogenesis protein compare
PP_1185 -1.0 -4.2 Outer membrane protein H1 compare
PP_0673 -1.0 -1.4 conserved protein of unknown function compare
PP_5216 -0.9 -2.1 exopolyphosphatase compare
PP_2532 -0.9 -4.4 conserved protein of unknown function compare
PP_4482 -0.9 -3.7 Transcriptional regulator, AraC family compare
PP_5456 -0.9 -2.5 conserved protein of unknown function compare
PP_1994 -0.9 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4964 -0.9 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_5475 -0.9 -1.8 conserved protein of unknown function compare
PP_0393 -0.9 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0001 -0.8 -1.5 probable chromosome-partitioning protein compare
PP_3938 -0.8 -2.1 conserved protein of unknown function compare
PP_4997 -0.8 -2.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1362 -0.8 -2.3 pyruvate kinase II compare
PP_5352 -0.8 -5.9 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4223 -0.8 -1.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2025 -0.8 -2.2 Exonuclease SbcD compare
PP_3621 -0.8 -2.9 vanillin dehydrogenase, iorA-like component (from data) compare
PP_2403 -0.8 -1.1 Chemotaxis protein CheY compare
PP_3580 -0.8 -1.6 conserved protein of unknown function compare
PP_2302 -0.8 -3.1 DNA-binding, ATP-dependent protease compare
PP_0306 -0.7 -1.9 conserved protein of unknown function compare
PP_0630 -0.7 -1.3 DNA gyrase inhibitor YacG compare
PP_2433 -0.7 -1.8 conserved protein of unknown function compare
PP_0801 -0.7 -1.5 conserved exported protein of unknown function compare
PP_4503 -0.7 -3.0 DNA-binding response regulator compare
PP_2884 -0.7 -3.1 XRE family transcriptional regulator compare
PP_3098 -0.7 -1.1 conserved protein of unknown function compare
PP_5583 -0.7 -1.2 conserved protein of unknown function compare
PP_1633 -0.7 -2.9 conserved exported protein of unknown function compare
PP_2776 -0.7 -3.0 Homocysteine S-methyltransferase family protein compare
PP_0998 -0.7 -4.4 conserved protein of unknown function compare
PP_5491 -0.7 -1.3 conserved protein of unknown function with SEC-C motif domain compare
PP_4892 -0.7 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1898 -0.7 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PP_2189 -0.7 -2.2 conserved protein of unknown function compare
PP_1237 -0.7 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5058 -0.7 -2.4 Carboxy-terminal-processing protease compare
PP_0872 -0.7 -3.4 Peptide chain release factor 3 compare
PP_5279 -0.7 -1.8 conserved protein of unknown function compare
PP_3117 -0.7 -1.7 putative protein involved in error-prone processing of DNA lesions compare
PP_0725 -0.7 -3.0 conserved hypothetical TPR repeat protein compare
PP_5604 -0.6 -1.1 putative subtilisin-like serine protease compare
PP_0003 -0.6 -2.0 16S RNA methyltransferase compare
PP_5350 -0.6 -2.1 Transcriptional regulator, RpiR family compare
PP_1664 -0.6 -1.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_3284 -0.6 -3.0 enoyl-CoA hydratase-isomerase compare
PP_t11 -0.6 -1.6 tRNA-Lys compare
PP_2364 -0.6 -3.1 conserved protein of unknown function compare
PP_1733 -0.6 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5640 -0.6 -1.1 conserved protein of unknown function compare
PP_5084 -0.6 -4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2028 -0.6 -2.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2365 -0.6 -2.5 Transcriptional regulator, AraC family compare
PP_1269 -0.6 -1.1 Universal stress protein family compare
PP_2820 -0.6 -1.6 HTH-type transcriptional regulator nfxB compare
PP_3942 -0.6 -2.8 maleate isomerase compare
PP_5556 -0.6 -2.0 putative bacteriophage lysis protein compare
PP_4066 -0.6 -2.1 methylglutaconyl-CoA hydratase compare
PP_2299 -0.6 -1.8 Trigger factor compare
PP_4546 -0.6 -2.2 ATP-dependent helicase HrpA compare
PP_4937 -0.6 -2.2 toluene tolerance protein compare
PP_2371 -0.6 -2.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1214 -0.6 -1.3 putative transcriptional regulatory protein compare
PP_5594 -0.6 -1.8 conserved protein of unknown function compare
PP_3346 -0.6 -1.5 Nickel transporter ATP-binding protein compare
PP_4329 -0.6 -1.9 FlhB domain protein compare
PP_5329 -0.6 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5706 -0.6 -1.1 Sec translocation complex - SecG subunit compare
PP_3040 -0.6 -2.1 Pyocin R2_PP, holin compare
PP_5191 -0.6 -1.7 conserved exported protein of unknown function compare
PP_5528 -0.5 -1.2 conserved protein of unknown function compare
PP_2825 -0.5 -2.0 putative Integrase compare
PP_4500 -0.5 -2.3 TrpH family protein compare
PP_2087 -0.5 -1.5 CmpX protein compare
PP_4338 -0.5 -3.1 Chemotaxis histidine kinase CheA compare
PP_0556 -0.5 -1.1 Acetoin catabolism protein compare
PP_1562 -0.5 -1.3 putative Phage terminase, small subunit compare
PP_2027 -0.5 -2.8 conserved exported protein of unknown function compare
PP_5658 -0.5 -2.5 protein of unknown function compare
PP_5541 -0.5 -2.5 conserved protein of unknown function compare
PP_5174 -0.5 -2.3 Efflux membrane fusion protein, RND family compare
PP_1871 -0.5 -2.4 Protease HtpX compare
PP_0123 -0.5 -3.4 DNA polymerase I, 5 compare
PP_5328 -0.5 -1.4 putative phosphate transport system permease protein compare
PP_0195 -0.5 -1.9 conserved protein of unknown function compare
PP_4625 -0.5 -1.7 anti-holin regulator of holin CidA compare
PP_2738 -0.5 -2.2 putative Transcriptional regulator compare
PP_2540 -0.5 -1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2747 -0.5 -1.4 conserved protein of unknown function compare
PP_5093 -0.5 -0.8 twitching motility protein compare
PP_1076 -0.5 -2.7 aquaglyceroporin compare
PP_0214 -0.5 -3.1 4-aminobutyrate aminotransferase compare
PP_0303 -0.5 -2.9 dehydrocarnitine cleavage enzyme compare
PP_0202 -0.5 -2.1 CBS domain-containing protein compare
PP_0809 -0.5 -2.7 disulfide bond formation protein B compare
PP_5294 -0.5 -3.2 Ribonuclease PH compare
PP_3722 -0.5 -2.9 Alanine racemase compare
PP_4897 -0.5 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PP_3245 -0.5 -0.7 conserved protein of unknown function compare
PP_3762 -0.5 -2.2 Response regulator compare
PP_2336 -0.5 -1.8 aconitate hydratase 1 compare
PP_5248 -0.5 -0.7 putative hydrolase compare
PP_4198 -0.5 -2.6 OmpA family protein compare
PP_4331 -0.5 -2.3 conserved protein of unknown function compare
PP_1869 -0.5 -2.8 4,5-DOPA-dioxygenase compare
PP_2883 -0.5 -1.1 conserved protein of unknown function compare
PP_0994 -0.5 -2.8 putative RNA polymerase sigma factor compare
PP_3136 -0.5 -2.1 putative O-acetyltransferase compare
PP_3318 -0.5 -1.3 conserved protein of unknown function compare
PP_1217 -0.5 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4581 -0.5 -2.0 putative amidotransferase compare
PP_3726 -0.5 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_2018 -0.5 -1.9 adhesin-associated BNR repeat protein (from data) compare
PP_0963 -0.5 -1.6 putative BolA family protein compare
PP_3058 -0.5 -1.9 conserved protein of unknown function compare
PP_4797 -0.5 -0.9 conserved protein of unknown function compare
PP_4204 -0.5 -1.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1310 -0.5 -1.5 conserved hypothetical protein compare
PP_4392 -0.5 -2.6 chemotaxis protein methyltransferase compare
PP_3541 -0.5 -1.2 Transporter, MgtC family compare
PP_2404 -0.5 -2.0 conserved exported protein of unknown function compare
PP_2397 -0.5 -1.7 EF hand domain protein compare
PP_4057 -0.5 -2.6 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_1366 -0.5 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_1325 -0.5 -2.4 putative lipoprotein compare
PP_3495 -0.5 -1.7 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_0254 -0.5 -2.2 conserved protein of unknown function compare
PP_1300 -0.5 -2.3 putative amino acid ABC transporter - ATP-binding subunit compare
PP_5014 -0.5 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_2740 -0.5 -0.5 Transcriptional regulator, MerR family compare
PP_4811 -0.5 -1.8 Gamma-glutamyl phosphate reductase compare
PP_3891 -0.5 -0.9 conserved protein of unknown function compare
PP_1036 -0.5 -3.0 membrane-bound lytic murein transglycosylase F compare
PP_3989 -0.5 -1.8 DNA-cytosine methyltransferase compare
PP_1917 -0.5 -2.3 4-amino-4-deoxychorismate lyase compare
PP_5094 -0.5 -2.4 putative enzyme with PLP binding domain compare
PP_3348 -0.5 -2.5 GGDEF domain protein compare
PP_2079 -0.5 -1.4 conserved protein of unknown function compare
PP_4824 -0.4 -2.2 Sensor histidine kinase/response regulator compare
PP_0292 -0.4 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2411 -0.4 -2.4 Major facilitator family transporter compare
PP_5317 -0.4 -1.8 Probable chorismate pyruvate-lyase compare
PP_2030 -0.4 -1.5 conserved protein of unknown function compare
PP_5017 -0.4 -0.9 Sec-independent protein translocase protein TatB compare
PP_5557 -0.4 -1.3 protein of unknown function compare
PP_0346 -0.4 -2.5 putative Heptose kinase WapQ compare
PP_1503 -0.4 -1.4 conserved protein of unknown function compare
PP_3363 -0.4 -1.4 putative thymidylate kinase compare
PP_2177 -0.4 -1.7 putative transcriptional regulator compare
PP_1605 -0.4 -1.5 Ribonuclease HII compare
PP_3312 -0.4 -1.0 putative Heat shock protein compare
PP_3485 -0.4 -2.6 conserved exported protein of unknown function compare
PP_5022 -0.4 -1.2 Glutamine transport ATP-binding protein GlnQ compare
PP_4499 -0.4 -1.4 putative maturation enzyme compare
PP_4671 -0.4 -1.8 conserved exported protein of unknown function compare
PP_2031 -0.4 -0.9 conserved protein of unknown function compare
PP_0668 -0.4 -2.1 putative Transmembrane sensor compare
PP_2725 -0.4 -1.4 Protease PfpI compare
PP_0188 -0.4 -2.5 putative Uroporphyrin-III C-methyltransferase compare
PP_0293 -0.4 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4131 -0.4 -2.0 NADH-quinone oxidoreductase subunit N compare
PP_4486 -0.4 -2.3 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_3640 -0.4 -1.2 Transcriptional regulator, AraC family compare
PP_4045 -0.4 -1.5 conserved protein of unknown function compare
PP_1629 -0.4 -2.4 Protein RecA compare
PP_2886 -0.4 -2.9 putative Cytochrome b561 compare
PP_5212 -0.4 -2.3 Oxidoreductase, iron-sulfur-binding compare
PP_2204 -0.4 -1.9 copper resistance protein B compare
PP_0321 -0.4 -2.2 low specificity L-threonine aldolase compare
PP_4980 -0.4 -2.4 ATP-dependent RNA helicase compare
PP_4666 -0.4 -1.8 3-hydroxyisobutyrate dehydrogenase compare
PP_3332 -0.4 -2.1 putative cytochrome c-type protein compare


Specific Phenotypes

For 1 genes in this experiment