Experiment set41IT034 for Pseudomonas putida KT2440

Compare to:

P. putida compost MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_1781 -2.5 -16.9 putative O-acyltransferase compare
PP_4964 -2.2 -5.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1734 -1.9 -3.8 Probable septum site-determining protein MinC compare
PP_2029 -1.8 -4.1 von Willebrand factor type A domain protein compare
PP_2378 -1.7 -3.5 Fe/S biogenesis protein NfuA compare
PP_0164 -1.4 -4.1 conserved protein of unknown function compare
PP_0063 -1.4 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1214 -1.3 -3.2 putative transcriptional regulatory protein compare
PP_0653 -1.3 -2.0 conserved protein of unknown function compare
PP_5594 -1.2 -1.9 conserved protein of unknown function compare
PP_2883 -1.2 -1.6 conserved protein of unknown function compare
PP_5706 -1.2 -2.3 Sec translocation complex - SecG subunit compare
PP_2414 -1.1 -1.4 conserved exported protein of unknown function compare
PP_1215 -1.1 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1269 -1.1 -1.8 Universal stress protein family compare
PP_4196 -1.1 -2.4 conserved exported protein of unknown function compare
PP_1410 -1.0 -1.6 conserved protein of unknown function compare
PP_4902 -1.0 -2.8 Oligoribonuclease compare
PP_0801 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4004 -1.0 -3.3 DNA translocase FtsK compare
PP_0276 -1.0 -1.7 Transcriptional regulator, Cro/CI family compare
PP_1632 -0.9 -2.2 conserved protein of unknown function compare
PP_4811 -0.9 -3.2 Gamma-glutamyl phosphate reductase compare
PP_0218 -0.9 -4.3 Sensory box protein compare
PP_1310 -0.9 -2.5 conserved hypothetical protein compare
PP_1468 -0.9 -2.3 Tyrosine recombinase XerD compare
PP_5328 -0.9 -1.8 putative phosphate transport system permease protein compare
PP_0195 -0.8 -1.8 conserved protein of unknown function compare
PP_4098 -0.8 -1.9 UvrABC system protein C compare
PP_0725 -0.8 -3.3 conserved hypothetical TPR repeat protein compare
PP_0998 -0.8 -4.5 conserved protein of unknown function compare
PP_5110 -0.8 -2.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1237 -0.8 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1493 -0.8 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0188 -0.7 -3.9 putative Uroporphyrin-III C-methyltransferase compare
PP_4546 -0.7 -2.7 ATP-dependent helicase HrpA compare
PP_2899 -0.7 -1.1 conserved exported protein of unknown function compare
PP_1733 -0.7 -1.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_5456 -0.7 -1.4 conserved protein of unknown function compare
PP_0963 -0.7 -2.5 putative BolA family protein compare
PP_2299 -0.7 -2.2 Trigger factor compare
PP_2681 -0.7 -1.6 coenzyme PQQ synthesis protein D compare
PP_3730 -0.7 -1.3 Transcriptional regulatory protein AruR compare
PP_1697 -0.7 -2.5 transcriptional regulator, GntR family compare
PP_1556 -0.7 -2.4 conserved protein of unknown function compare
PP_t29 -0.7 -1.3 tRNA-Ala compare
PP_3258 -0.7 -1.3 conserved protein of unknown function compare
PP_4213 -0.7 -1.6 putative dipeptidase compare
PP_2025 -0.7 -2.2 Exonuclease SbcD compare
PP_0984 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_2302 -0.7 -3.1 DNA-binding, ATP-dependent protease compare
PP_3098 -0.7 -1.0 conserved protein of unknown function compare
PP_4267 -0.7 -3.2 Recombination protein RecR compare
PP_4271 -0.7 -0.9 conserved protein of unknown function compare
PP_4340 -0.7 -2.8 response regulator for chemotactic signal transduction compare
PP_4199 -0.7 -1.0 putative Lipoprotein compare
PP_0833 -0.6 -1.1 queuine tRNA-ribosyltransferase compare
PP_4362 -0.6 -2.2 conserved protein of unknown function compare
PP_3833 -0.6 -2.4 Response regulator compare
PP_5701 -0.6 -1.7 conserved protein of unknown function compare
PP_4198 -0.6 -2.9 OmpA family protein compare
PP_4288 -0.6 -1.9 ureidoglycolate lyase compare
PP_4109 -0.6 -1.5 conserved protein of unknown function compare
PP_0123 -0.6 -4.2 DNA polymerase I, 5 compare
PP_0872 -0.6 -3.0 Peptide chain release factor 3 compare
PP_2031 -0.6 -1.8 conserved protein of unknown function compare
PP_2716 -0.6 -1.5 arsenate reductase compare
PP_5327 -0.6 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_5310 -0.6 -2.9 junction-specific ATP-dependent DNA helicase compare
PP_1185 -0.6 -3.0 Outer membrane protein H1 compare
PP_0307 -0.6 -2.3 conserved exported protein of unknown function compare
PP_3541 -0.6 -1.8 Transporter, MgtC family compare
PP_2144 -0.6 -1.8 Transcriptional regulator, TetR family compare
PP_0048 -0.6 -1.3 conserved protein of unknown function compare
PP_0265 -0.6 -2.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
PP_2160 -0.6 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_3738 -0.6 -1.9 putative Transcriptional regulator VanR compare
PP_4826 -0.6 -2.9 Precorrin-3B C17-methyltransferase compare
PP_4669 -0.6 -2.2 OmpA family protein compare
PP_4497 -0.6 -2.6 conserved protein of unknown function compare
PP_3640 -0.6 -1.6 Transcriptional regulator, AraC family compare
PP_2738 -0.6 -2.2 putative Transcriptional regulator compare
PP_0065 -0.6 -2.0 NAD-binding component of TrK potassium transporter compare
PP_3415 -0.6 -3.4 Transcriptional regulator, LacI family compare
PP_5014 -0.6 -1.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0150 -0.6 -1.7 conserved exported protein of unknown function compare
PP_5352 -0.6 -3.9 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2379 -0.6 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_1845 -0.6 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_4120 -0.6 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_0794 -0.6 -1.8 1-phosphofructokinase monomer compare
PP_5084 -0.6 -4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0677 -0.6 -1.6 putative Lipoprotein compare
PP_0254 -0.5 -2.5 conserved protein of unknown function compare
PP_1076 -0.5 -2.8 aquaglyceroporin compare
PP_4726 -0.5 -1.6 Chaperone protein DnaJ compare
PP_1664 -0.5 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4338 -0.5 -3.0 Chemotaxis histidine kinase CheA compare
PP_5058 -0.5 -2.4 Carboxy-terminal-processing protease compare
PP_1662 -0.5 -1.8 conserved protein of unknown function compare
PP_2027 -0.5 -2.9 conserved exported protein of unknown function compare
PP_0087 -0.5 -2.1 conserved exported protein of unknown function compare
PP_0663 -0.5 -2.2 Transcriptional regulator, AsnC family compare
PP_1099 -0.5 -0.8 Cold shock protein CapB compare
PP_0994 -0.5 -3.2 putative RNA polymerase sigma factor compare
PP_3884 -0.5 -1.5 Phage holin, lambda family compare
PP_5185 -0.5 -3.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2773 -0.5 -0.8 conserved protein of unknown function compare
PP_0240 -0.5 -1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_3471 -0.5 -2.6 conserved protein of unknown function compare
PP_3363 -0.5 -1.8 putative thymidylate kinase compare
PP_2825 -0.5 -2.2 putative Integrase compare
PP_2187 -0.5 -2.6 Universal stress protein family compare
PP_3198 -0.5 -1.5 Ferredoxin, 2Fe-2S compare
PP_2189 -0.5 -1.4 conserved protein of unknown function compare
PP_0002 -0.5 -3.2 probable chromosome partition protein compare
PP_1097 -0.5 -1.0 Methionine--tRNA ligase compare
PP_4124 -0.5 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_3043 -0.5 -1.0 conserved protein of unknown function compare
PP_5608 -0.5 -1.5 putative exported protein compare
PP_5529 -0.5 -2.0 putative epimerase compare
PP_3116 -0.5 -1.6 transcriptional repressor compare
PP_4122 -0.5 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1352 -0.5 -1.5 UPF0234 protein PP_1352 compare
PP_0809 -0.5 -2.9 disulfide bond formation protein B compare
PP_0914 -0.5 -3.1 GGDEF domain protein compare
PP_0217 -0.5 -2.8 delta-9 fatty acid desaturase compare
PP_4328 -0.5 -1.5 conserved protein of unknown function compare
PP_4593 -0.5 -1.3 conserved protein of unknown function compare
PP_4937 -0.5 -2.1 toluene tolerance protein compare
PP_4880 -0.5 -3.4 exoribonuclease R compare
PP_0627 -0.5 -1.4 conserved protein of unknown function compare
PP_5566 -0.5 -2.6 protein of unknown function compare
PP_3190 -0.5 -1.1 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1864 -0.5 -1.8 conserved protein of unknown function compare
PP_0719 -0.5 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3339 -0.5 -2.0 conserved exported protein of unknown function compare
PP_2402 -0.5 -0.8 putative Sensor histidine kinase compare
PP_1088 -0.5 -3.6 Argininosuccinate synthase compare
PP_3726 -0.5 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_0630 -0.5 -0.9 DNA gyrase inhibitor YacG compare
PP_0290 -0.5 -2.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4485 -0.5 -3.5 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_1036 -0.5 -3.3 membrane-bound lytic murein transglycosylase F compare
PP_2580 -0.5 -1.9 conserved protein of unknown function compare
PP_0319 -0.5 -1.1 conserved protein of unknown function compare
PP_3075 -0.5 -2.0 putative transcriptional regulator compare
PP_2036 -0.5 -2.6 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4066 -0.5 -1.3 methylglutaconyl-CoA hydratase compare
PP_4506 -0.5 -2.4 Nitroreductase family protein compare
PP_0225 -0.5 -2.4 sulfur compound ABC transporter - ATP-binding subunit compare
PP_2359 -0.5 -2.3 putative Type 1 pili subunit CsuA/B protein compare
PP_1082 -0.5 -1.8 bacterioferritin compare
PP_1824 -0.5 -1.2 Smr domain protein compare
PP_5191 -0.5 -1.8 conserved exported protein of unknown function compare
PP_4034 -0.5 -1.6 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_5667 -0.5 -1.4 putative microcin B17-like-processing protein, McbC family compare
PP_5338 -0.5 -1.2 aspartate ammonia-lyase compare
PP_4057 -0.5 -2.5 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_2411 -0.5 -2.5 Major facilitator family transporter compare
PP_2373 -0.5 -1.4 conserved protein of unknown function compare
PP_4700 -0.5 -0.9 pantothenate synthetase compare
PP_4892 -0.5 -2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4771 -0.5 -2.2 conserved membrane protein of unknown function compare
PP_4666 -0.5 -2.7 3-hydroxyisobutyrate dehydrogenase compare
PP_3332 -0.5 -1.8 putative cytochrome c-type protein compare
PP_3903 -0.4 -1.3 conserved protein of unknown function compare
PP_0321 -0.4 -2.6 low specificity L-threonine aldolase compare
PP_0306 -0.4 -0.9 conserved protein of unknown function compare
PP_5324 -0.4 -0.8 Response regulator compare
PP_0346 -0.4 -2.5 putative Heptose kinase WapQ compare
PP_3802 -0.4 -1.6 putative Cation ABC transporter, ATP-binding protein compare
PP_2863 -0.4 -1.5 conserved membrane protein of unknown function compare
PP_2633 -0.4 -1.0 conserved protein of unknown function compare
PP_3312 -0.4 -1.2 putative Heat shock protein compare
PP_1502 -0.4 -2.0 OmpA family protein compare
PP_2756 -0.4 -1.1 conserved protein of unknown function compare
PP_1621 -0.4 -2.0 Protein-L-isoaspartate O-methyltransferase compare
PP_2929 -0.4 -2.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3241 -0.4 -0.6 conserved exported protein of unknown function compare
PP_2898 -0.4 -0.7 conserved exported protein of unknown function compare
PP_1763 -0.4 -0.9 putative oxidoreductase compare
PP_2107 -0.4 -0.6 conserved protein of unknown function compare
PP_1325 -0.4 -2.2 putative lipoprotein compare
PP_4980 -0.4 -2.8 ATP-dependent RNA helicase compare
PP_3942 -0.4 -1.8 maleate isomerase compare
PP_0784 -0.4 -1.5 conserved protein of unknown function compare
PP_3185 -0.4 -1.2 Pet18 protein compare
PP_1647 -0.4 -1.7 conserved protein of unknown function compare
PP_3643 -0.4 -1.3 putative Oxidoreductase compare
PP_1629 -0.4 -2.3 Protein RecA compare
PP_4481 -0.4 -2.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1667 -0.4 -2.2 putative Transporter compare
PP_4335 -0.4 -2.6 flagellar motor protein compare
PP_1527 -0.4 -2.3 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) compare
PP_5449 -0.4 -2.4 conserved exported protein of unknown function compare
PP_0289 -0.4 -2.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0759 -0.4 -3.1 conserved exported protein of unknown function compare
PP_4500 -0.4 -1.4 TrpH family protein compare
PP_1044 -0.4 -2.0 Lipoprotein UxpA compare


Specific Phenotypes

For 1 genes in this experiment