Experiment set41IT022 for Pseudomonas putida KT2440

Compare to:

P. putida Sci small MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_3258 -6.1 -2.3 conserved protein of unknown function compare
PP_2756 -5.7 -2.1 conserved protein of unknown function compare
PP_2416 -5.7 -2.1 putative Iron ABC transporter, ATP-binding protein compare
PP_2864 -5.7 -2.5 conserved protein of unknown function compare
PP_5001 -5.6 -2.7 protease HslVU, ATPase component compare
PP_1512 -5.6 -2.4 conserved protein of unknown function compare
PP_1451 -5.6 -2.9 conserved exported protein of unknown function compare
PP_0610 -5.5 -2.7 conserved exported protein of unknown function compare
PP_2764 -5.3 -2.3 FMN reductase (NADPH) compare
PP_2511 -5.3 -2.3 conserved protein of unknown function compare
PP_2031 -5.3 -2.0 conserved protein of unknown function compare
PP_3580 -5.2 -1.9 conserved protein of unknown function compare
PP_1269 -4.9 -1.1 Universal stress protein family compare
PP_0630 -4.9 -1.1 DNA gyrase inhibitor YacG compare
PP_5533 -4.9 -1.1 conserved protein of unknown function compare
PP_0276 -4.9 -1.0 Transcriptional regulator, Cro/CI family compare
PP_1691 -4.8 -2.3 conserved protein of unknown function compare
PP_5267 -4.7 -2.0 putative cytochrome c5 compare
PP_5621 -4.6 -1.7 protein of unknown function compare
PP_2414 -4.5 -2.0 conserved exported protein of unknown function compare
PP_3637 -4.5 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3035 -4.4 -1.4 conserved protein of unknown function compare
PP_2568 -4.4 -0.9 Ring-cleaving dioxygenase compare
PP_2142 -4.4 -1.9 Cell division inhibitor SulA compare
PP_2070 -4.4 -1.3 Transcriptional regulator, AraC family compare
PP_1045 -4.3 -1.3 Type II secretion pathway protein XcpP compare
PP_2253 -4.2 -1.5 Transcriptional regulator, GntR family compare
PP_5644 -4.1 -2.9 conserved membrane protein of unknown function compare
PP_5604 -4.1 -1.5 putative subtilisin-like serine protease compare
PP_1215 -4.1 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_t12 -4.0 -0.9 tRNA-Thr compare
PP_2999 -4.0 -0.9 Glyoxalase family protein compare
PP_4271 -4.0 -0.8 conserved protein of unknown function compare
PP_5508 -4.0 -0.8 conserved protein of unknown function compare
PP_1632 -4.0 -1.2 conserved protein of unknown function compare
PP_1713 -3.9 -1.2 Transcriptional regulator PcaQ compare
PP_3519 -3.9 -0.8 putative Lipoprotein compare
PP_2720 -3.9 -0.8 conserved protein of unknown function compare
PP_2203 -3.9 -1.4 conserved protein of unknown function compare
PP_1237 -3.9 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1410 -3.7 -1.1 conserved protein of unknown function compare
PP_3312 -3.7 -1.1 putative Heat shock protein compare
PP_2740 -3.6 -1.1 Transcriptional regulator, MerR family compare
PP_3938 -3.6 -1.1 conserved protein of unknown function compare
PP_1352 -3.6 -3.4 UPF0234 protein PP_1352 compare
PP_2028 -3.5 -3.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2153 -3.5 -2.6 conserved protein of unknown function compare
PP_2299 -3.4 -2.2 Trigger factor compare
PP_1366 -3.3 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_5475 -3.3 -1.0 conserved protein of unknown function compare
PP_1293 -3.3 -1.0 molybdopterin synthase small subunit compare
PP_2847 -3.2 -1.0 Urease accessory protein UreJ compare
PP_4342 -3.1 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_1097 -3.1 -0.9 Methionine--tRNA ligase compare
PP_2581 -3.1 -0.9 conserved protein of unknown function compare
PP_4902 -3.0 -3.0 Oligoribonuclease compare
PP_3245 -3.0 -0.9 conserved protein of unknown function compare
PP_4910 -3.0 -1.9 conserved protein of unknown function compare
PP_0846 -2.9 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_2340 -2.9 -3.2 conserved protein of unknown function compare
PP_2773 -2.9 -0.9 conserved protein of unknown function compare
PP_2499 -2.8 -0.8 conserved protein of unknown function compare
PP_2844 -2.8 -2.7 Urease subunit beta compare
PP_2459 -2.8 -1.8 ribose pyranase compare
PP_2725 -2.7 -1.9 Protease PfpI compare
PP_1322 -2.6 -0.7 putative Lipoprotein compare
PP_4136 -2.6 -0.8 Transcriptional regulator, LuxR family compare
PP_2071 -2.6 -3.1 conserved protein of unknown function compare
PP_2631 -2.5 -0.7 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5393 -2.5 -0.7 putative metal-binding chaperone compare
PP_5176 -2.4 -2.2 conserved protein of unknown function compare
PP_1826 -2.3 -2.2 Hydrolase, isochorismatase family compare
PP_4828 -2.3 -0.7 Precorrin-8X methylmutase compare
PP_2752 -2.3 -3.3 conserved exported protein of unknown function compare
PP_5712 -2.3 -3.1 conserved protein of unknown function compare
PP_3013 -2.3 -2.0 conserved protein of unknown function compare
PP_4832 -2.3 -1.9 Precorrin-6x reductase compare
PP_2738 -2.2 -2.2 putative Transcriptional regulator compare
PP_3916 -2.2 -1.9 conserved protein of unknown function compare
PP_2417 -2.2 -2.2 putative Iron ABC transporter, permease protein compare
PP_3730 -2.2 -1.7 Transcriptional regulatory protein AruR compare
PP_3145 -2.2 -2.5 conserved protein of unknown function compare
PP_1026 -2.1 -1.2 Peptidase, M23/M37 family compare
PP_1763 -2.1 -2.6 putative oxidoreductase compare
PP_2378 -2.1 -1.4 Fe/S biogenesis protein NfuA compare
PP_2392 -2.1 -4.2 putative major facilitator family transporter compare
PP_3997 -2.1 -5.4 putative Glycosyl transferase compare
PP_1635 -2.1 -1.5 DNA-binding response regulator compare
PP_2078 -2.1 -2.3 transcriptional activator protein LysR compare
PP_4847 -2.0 -1.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_5007 -2.0 -2.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4989 -2.0 -3.6 Protein PilJ compare
PP_2537 -2.0 -2.2 conserved protein of unknown function compare
PP_5028 -2.0 -3.6 proline iminopeptidase compare
PP_0888 -1.9 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_2821 -1.9 -3.2 conserved exported protein of unknown function compare
PP_1404 -1.9 -1.2 conserved protein of unknown function compare
PP_3353 -1.9 -2.7 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_3732 -1.9 -2.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_3201 -1.9 -2.0 BNR domain protein compare
PP_2074 -1.9 -2.4 Transcriptional regulator, LysR family compare
PP_4130 -1.9 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2136 -1.9 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2113 -1.9 -2.9 Ribosomal RNA large subunit methyltransferase M compare
PP_5054 -1.9 -1.8 glutaredoxin 3 compare
PP_3048 -1.9 -1.5 conserved protein of unknown function compare
PP_5603 -1.8 -2.8 putative FAD dependent oxidoreductase compare
PP_5480 -1.8 -2.5 conserved exported protein of unknown function compare
PP_3460 -1.8 -1.6 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4797 -1.8 -0.8 conserved protein of unknown function compare
PP_0959 -1.8 -1.2 phospholipid ABC transporter compare
PP_2030 -1.8 -2.9 conserved protein of unknown function compare
PP_2637 -1.8 -2.4 endo-1,4-D-glucanase subunit of cellulose synthase compare
PP_3332 -1.8 -1.4 putative cytochrome c-type protein compare
PP_2328 -1.8 -3.4 Phosphoadenosine phosphosulfate reductase compare
PP_4424 -1.7 -1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2088 -1.7 -1.4 RNA polymerase sigma factor SigX compare
PP_5328 -1.7 -1.1 putative phosphate transport system permease protein compare
PP_3314 -1.7 -1.3 Heat shock protein, HSP20 family compare
PP_5313 -1.7 -1.6 DNA-binding protein HU-alpha compare
PP_4159 -1.7 -2.2 Potassium-transporting ATPase C chain compare
PP_0122 -1.7 -1.7 conserved exported protein of unknown function compare
PP_3284 -1.7 -1.4 enoyl-CoA hydratase-isomerase compare
PP_1020 -1.7 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_1096 -1.7 -1.5 putative electron transport complex protein compare
PP_2024 -1.7 -3.6 Exonuclease SbcC compare
PP_2025 -1.7 -1.9 Exonuclease SbcD compare
PP_2336 -1.7 -2.8 aconitate hydratase 1 compare
PP_3003 -1.6 -1.7 3-dehydroquinate dehydratase 3, type II compare
PP_5561 -1.6 -2.2 conserved protein of unknown function compare
PP_3747 -1.6 -2.8 glycolate oxidase, iron-sulfur subunit compare
PP_0293 -1.6 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5350 -1.6 -2.5 Transcriptional regulator, RpiR family compare
PP_2402 -1.6 -0.9 putative Sensor histidine kinase compare
PP_3289 -1.6 -2.5 Acetyltransferase, GNAT family compare
PP_4213 -1.6 -1.5 putative dipeptidase compare
PP_3233 -1.6 -2.4 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_4891 -1.6 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3855 -1.6 -2.7 conserved protein of unknown function compare
PP_1825 -1.6 -1.9 conserved exported protein of unknown function compare
PP_2009 -1.6 -2.9 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_2379 -1.6 -2.8 putative cytochrome oxidase biogenesis protein compare
PP_2774 -1.6 -2.8 glycine betaine ABC transporter, ATPase/permease fusion protein compare
PP_2247 -1.6 -1.9 putative Endoribonuclease compare
PP_3051 -1.6 -1.9 Pyocin R2_PP, tail spike protein compare
PP_3749 -1.6 -2.0 conserved protein of unknown function compare
PP_1729 -1.5 -0.9 conserved protein of unknown function compare
PP_3625 -1.5 -1.2 Transporter, LysE family compare
PP_4120 -1.5 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_2894 -1.5 -1.6 conserved protein of unknown function compare
PP_3919 -1.5 -0.9 conserved protein of unknown function compare
PP_2682 -1.5 -1.7 Fe-containing alcohol dehydrogenase compare
PP_1829 -1.5 -1.1 Hydrolase, alpha/beta fold family compare
PP_4507 -1.5 -4.5 potassium transporter compare
PP_2969 -1.5 -2.1 putative repressor of copper utilisation proteins compare
PP_1855 -1.5 -1.3 conserved exported protein of unknown function compare
PP_2189 -1.5 -1.3 conserved protein of unknown function compare
PP_2319 -1.5 -1.7 conserved protein of unknown function compare
PP_3880 -1.5 -1.0 conserved exported protein of unknown function compare
PP_5558 -1.5 -1.7 putative transcriptional xre family of phage origin compare
PP_0303 -1.4 -1.7 dehydrocarnitine cleavage enzyme compare
PP_0833 -1.4 -0.8 queuine tRNA-ribosyltransferase compare
PP_1781 -1.4 -6.6 putative O-acyltransferase compare
PP_4166 -1.4 -2.5 conserved protein of unknown function compare
PP_3591 -1.4 -3.8 Delta 1-piperideine-2-carboxylate reductase compare
PP_1164 -1.4 -1.4 Transcriptional regulator, LysR family compare
PP_4929 -1.4 -2.2 Transcriptional regulator, LysR family compare
PP_4109 -1.4 -1.7 conserved protein of unknown function compare
PP_1513 -1.4 -1.0 Ribosomal RNA small subunit methyltransferase J compare
PP_2229 -1.4 -1.8 putative K(+)/H(+) antiporter subunit C compare
PP_1836 -1.4 -1.7 putative metal transporter, ZIP family compare
PP_0834 -1.4 -0.9 Sec translocation complex subunit YajC compare
PP_2532 -1.4 -1.7 conserved protein of unknown function compare
PP_3603 -1.4 -2.5 Transcriptional regulator, GntR family compare
PP_4013 -1.4 -1.7 MutT/nudix family protein compare
PP_1976 -1.4 -2.4 HlyD family secretion protein compare
PP_0188 -1.4 -2.6 putative Uroporphyrin-III C-methyltransferase compare
PP_4263 -1.4 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_3127 -1.4 -2.0 putative Exopolysaccharide transport protein compare
PP_3346 -1.3 -1.1 Nickel transporter ATP-binding protein compare
PP_2880 -1.3 -1.2 Transcriptional regulator, TetR family compare
PP_2254 -1.3 -1.9 Transcriptional regulator, GntR family compare
PP_2126 -1.3 -2.0 DNA-binding response regulator, LuxR family compare
PP_2665 -1.3 -1.1 Glycerol metabolism activator compare
PP_4266 -1.3 -1.9 Adenine phosphoribosyltransferase compare
PP_5345 -1.3 -2.6 Acetyltransferase, GNAT family compare
PP_4546 -1.3 -3.3 ATP-dependent helicase HrpA compare
PP_3505 -1.3 -0.8 conserved protein of unknown function compare
PP_2907 -1.3 -1.3 DNA-binding response regulator compare
PP_4054 -1.3 -0.8 conserved protein of unknown function compare
PP_0893 -1.3 -1.3 ThiJ/PfpI family protein compare
PP_3475 -1.3 -2.7 putative type II secretory pathway, pseudopilin pulG-related signal peptide protein compare
PP_3712 -1.3 -1.9 conserved protein of unknown function compare
PP_5230 -1.3 -1.7 Tyrosine recombinase XerC compare
PP_4776 -1.3 -2.9 AsnC family transcriptional regulator compare
PP_1697 -1.3 -1.0 transcriptional regulator, GntR family compare
PP_3454 -1.3 -2.0 putative transcriptional regulatory protein compare
PP_3231 -1.3 -1.6 conserved protein of unknown function compare
PP_3766 -1.3 -1.2 Lactoylglutathione lyase compare
PP_0668 -1.3 -3.5 putative Transmembrane sensor compare


Specific Phenotypes

For 7 genes in this experiment