| | gene | name | fitness | t score | description | |
|---|
| b2934 | cmtB | +1.3 | 1.1 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1361 | ydaW | +1.2 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0630 | lipB | +1.2 | 2.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1332 | ynaJ | +1.0 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b1765 | ydjA | +1.0 | 1.5 | predicted oxidoreductase (NCBI) | compare |
| b1480 | sra | +0.9 | 2.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1882 | cheY | +0.9 | 0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4699 | fnrS | +0.8 | 1.1 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4603 | rseX | +0.7 | 0.8 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0730 | mngR | +0.7 | 1.4 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3120 | yhaB | +0.7 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4538 | yoeF | +0.6 | 1.6 | hypothetical protein (RefSeq) | compare |
| b1753 | ynjA | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b1476 | fdnI | +0.6 | 0.9 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2051 | wcaH | +0.6 | 1.9 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b1143 | ymfI | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4596 | yciZ | +0.6 | 1.6 | hypothetical protein (RefSeq) | compare |
| b1506 | yneL | +0.6 | 1.2 | predicted transcriptional regulator (NCBI) | compare |
| b1792 | yeaO | +0.5 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4698 | mgrR | +0.5 | 2.1 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b2433 | b2433 | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4551 | yheV | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1195 | ymgE | +0.5 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b4503 | yafF | +0.5 | 0.8 | no description | compare |
| b1686 | ydiI | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b0247 | ykfG | +0.5 | 1.2 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4509 | ylcG | +0.5 | 1.5 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1733 | chbG | +0.5 | 3.1 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | +0.5 | 0.8 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0998 | torD | +0.5 | 0.9 | chaperone protein TorD (NCBI) | compare |
| b0852 | rimK | +0.5 | 3.0 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0381 | ddlA | +0.5 | 3.5 | D-alanylalanine synthetase (NCBI) | compare |
| b1502 | ydeQ | +0.4 | 1.4 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0798 | ybiA | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1461 | ydcE | +0.4 | 2.0 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b1566 | flxA | +0.4 | 2.2 | Qin prophage; predicted protein (NCBI) | compare |
| b2279 | nuoK | +0.4 | 1.2 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1930 | yedF | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b2587 | kgtP | +0.4 | 2.5 | alpha-ketoglutarate transporter (NCBI) | compare |
| b2809 | b2809 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2188 | yejM | +0.4 | 3.3 | predicted hydrolase, inner membrane (NCBI) | compare |
| b1709 | btuD | +0.4 | 0.8 | vitamin B12-transporter ATPase (NCBI) | compare |
| b4045 | yjbJ | +0.4 | 1.1 | predicted stress response protein (NCBI) | compare |
| b4614 | sokA | +0.4 | 1.7 | no description | compare |
| b1739 | osmE | +0.4 | 1.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b3889 | yiiE | +0.4 | 1.5 | predicted transcriptional regulator (RefSeq) | compare |
| b2058 | wcaB | +0.4 | 0.8 | predicted acyl transferase (NCBI) | compare |
| b1669 | ydhT | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | +0.4 | 0.5 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0549 | ybcO | +0.4 | 1.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b0617 | citD | +0.4 | 1.6 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b4640 | yoeG | +0.4 | 1.2 | no description | compare |
| b1768 | ydjB | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1357 | ydaS | +0.4 | 1.2 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1176 | minC | +0.4 | 1.2 | septum formation inhibitor (NCBI) | compare |
| b1557 | cspB | +0.3 | 1.0 | Qin prophage; cold shock protein (NCBI) | compare |
| b4592 | yccB | +0.3 | 1.2 | hypothetical protein (RefSeq) | compare |
| b0880 | cspD | +0.3 | 1.2 | cold shock protein homolog (NCBI) | compare |
| b4558 | yifL | +0.3 | 1.8 | predicted lipoprotein (NCBI) | compare |
| b4527 | b1354 | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1258 | yciF | +0.3 | 0.5 | hypothetical protein (NCBI) | compare |
| b2212 | alkB | +0.3 | 2.2 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b1511 | ydeV | +0.3 | 1.5 | putative kinase (VIMSS) | compare |
| b3037 | ygiB | +0.3 | 1.9 | conserved outer membrane protein (RefSeq) | compare |
| b4618 | tisB | +0.3 | 1.9 | lexA-regulated toxic peptide (RefSeq) | compare |
| b4505 | insX | +0.3 | 0.7 | predicted IS protein (RefSeq) | compare |
| b4376 | osmY | +0.3 | 1.9 | periplasmic protein (NCBI) | compare |
| b1362 | rzpR | +0.3 | 1.5 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1565 | ydfV | +0.3 | 1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b0641 | rlpB | +0.3 | 1.5 | minor lipoprotein (NCBI) | compare |
| b1113 | ycfS | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b4367 | fhuF | +0.3 | 2.5 | ferric iron reductase involved in ferric hydroximate transport (NCBI) | compare |
| b1427 | rimL | +0.3 | 1.1 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b3624 | rfaZ | +0.3 | 1.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2498 | upp | +0.3 | 1.1 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1418 | cybB | +0.3 | 0.9 | cytochrome b(561) (VIMSS) | compare |
| b1724 | ydiZ | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b3860 | dsbA | +0.3 | 2.6 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1849 | purT | +0.3 | 2.1 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b4511 | ybdZ | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.5 | conserved inner membrane protein (RefSeq) | compare |
| b2248 | yfaX | +0.3 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2992 | hybE | +0.3 | 1.8 | hydrogenase 2-specific chaperone (NCBI) | compare |
| b4460 | araH | +0.3 | 1.0 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b1073 | flgB | +0.3 | 2.1 | flagellar basal-body rod protein B (NCBI) | compare |
| b4157 | yjeN | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1976 | b1976 | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2019 | hisG | +0.3 | 2.0 | ATP phosphoribosyltransferase (NCBI) | compare |
| b4573 | insZ | +0.3 | 1.5 | no description | compare |
| b1150 | ymfR | +0.3 | 0.5 | e14 prophage; predicted protein (NCBI) | compare |
| b0367 | tauC | +0.3 | 1.8 | taurine transporter subunit (NCBI) | compare |
| b1838 | pphA | +0.3 | 1.9 | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (VIMSS) | compare |
| b0995 | torR | +0.3 | 1.7 | DNA-binding response regulator in two-component regulatory system with TorS (NCBI) | compare |
| b2804 | fucU | +0.3 | 1.4 | L-fucose mutarotase (NCBI) | compare |
| b1293 | sapB | +0.3 | 0.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2356 | yfdM | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1831 | proQ | +0.3 | 1.0 | putative solute/DNA competence effector (NCBI) | compare |
| b0509 | glxR | +0.3 | 1.6 | tartronate semialdehyde reductase, NADH-dependent (NCBI) | compare |
| b1360 | ydaV | +0.3 | 1.0 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b1948 | fliP | +0.3 | 1.7 | flagellar biosynthesis protein P (NCBI) | compare |
| b2287 | nuoB | +0.3 | 1.2 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0713 | ybgL | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4017 | arpA | +0.3 | 1.6 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b1737 | chbC | +0.3 | 2.0 | N,N'-diacetylchitobiose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1847 | yebF | +0.3 | 0.6 | predicted protein (RefSeq) | compare |
| b1524 | yneH | +0.3 | 0.4 | predicted glutaminase (NCBI) | compare |
| b0864 | artP | +0.3 | 1.4 | arginine transporter subunit (NCBI) | compare |
| b2486 | hyfF | +0.3 | 1.9 | NADH dehydrogenase subunit N (NCBI) | compare |
| b0193 | yaeF | +0.3 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2199 | ccmC | +0.3 | 1.7 | heme exporter subunit (NCBI) | compare |
| b2444 | yffM | +0.3 | 0.9 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b4656 | yjhY | +0.3 | 1.8 | no description | compare |
| b3068 | ygjF | +0.3 | 1.0 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b2774 | ygcW | +0.3 | 1.6 | putative oxidoreductase (VIMSS) | compare |
| b2673 | nrdH | +0.3 | 1.6 | glutaredoxin-like protein (NCBI) | compare |
| b0632 | dacA | +0.3 | 2.0 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b4631 | ykgQ | +0.3 | 0.9 | no description | compare |
| b1942 | fliJ | +0.3 | 0.6 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3686 | ibpB | +0.3 | 2.1 | heat shock chaperone (NCBI) | compare |
| b0192 | nlpE | +0.3 | 1.8 | lipoprotein involved with copper homeostasis and adhesion (NCBI) | compare |
| b1387 | maoC | +0.3 | 1.3 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b2209 | eco | +0.3 | 0.8 | ecotin precursor (NCBI) | compare |
| b2282 | nuoH | +0.3 | 1.4 | NADH dehydrogenase subunit H (NCBI) | compare |
| b0865 | ybjP | +0.3 | 0.8 | predicted lipoprotein (NCBI) | compare |
| b2408 | yfeN | +0.3 | 1.9 | conserved outer membrane protein (NCBI) | compare |
| b1348 | lar | +0.3 | 0.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0018 | mokC | +0.3 | 0.6 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0804 | ybiX | +0.3 | 1.3 | putative enzyme (VIMSS) | compare |
| b4646 | yrdE | +0.3 | 1.5 | no description | compare |
| b2959 | yggL | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1764 | selD | +0.3 | 1.2 | selenophosphate synthetase (NCBI) | compare |
| b4487 | yjdP | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0843 | ybjH | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b0429 | cyoD | +0.3 | 1.2 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b1919 | yedO | +0.3 | 0.7 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b2419 | yfeK | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1742 | b1742 | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4444 | rygA | +0.2 | 1.2 | unknown RNA (NCBI) | compare |
| b2534 | yfhR | +0.2 | 2.0 | predicted peptidase (RefSeq) | compare |
| b0542 | renD | +0.2 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2266 | elaB | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b2004 | yeeU | +0.2 | 1.4 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b3613 | yibP | +0.2 | 0.7 | putative membrane protein (VIMSS) | compare |
| b0872 | hcr | +0.2 | 1.7 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b4381 | deoC | +0.2 | 1.6 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b2442 | intZ | +0.2 | 1.4 | CPZ-55 prophage; predicted integrase (RefSeq) | compare |
| b4704 | arrS | +0.2 | 0.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2204 | napH | +0.2 | 1.4 | quinol dehydrogenase membrane component (NCBI) | compare |
| b4506 | ykgO | +0.2 | 1.3 | rpmJ (L36) paralog (NCBI) | compare |
| b2435 | amiA | +0.2 | 1.8 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b2765 | ygcM | +0.2 | 1.2 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b1415 | aldA | +0.2 | 1.4 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b3100 | yqjK | +0.2 | 1.4 | hypothetical protein (NCBI) | compare |
| b0269 | yagF | +0.2 | 1.8 | CP4-6 prophage; predicted dehydratase (NCBI) | compare |
| b2499 | purM | +0.2 | 1.4 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b1531 | marA | +0.2 | 1.3 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b1070 | flgN | +0.2 | 0.6 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3483 | yhhH | +0.2 | 0.1 | orf, hypothetical protein (VIMSS) | compare |
| b2208 | napF | +0.2 | 1.1 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b1342 | ydaN | +0.2 | 1.5 | zinc transporter (NCBI) | compare |
| b1478 | adhP | +0.2 | 1.1 | alcohol dehydrogenase (VIMSS) | compare |
| b3973 | birA | +0.2 | 0.9 | biotin--protein ligase (NCBI) | compare |
| b0714 | nei | +0.2 | 1.6 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b0393 | rdgC | +0.2 | 1.9 | recombination associated protein (NCBI) | compare |
| b2377 | yfdY | +0.2 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b2015 | yeeY | +0.2 | 1.8 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1614 | ydgA | +0.2 | 0.9 | hypothetical protein (NCBI) | compare |
| b2141 | yohJ | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b4246 | pyrL | +0.2 | 1.0 | pyrBI operon leader peptide (NCBI) | compare |
| b4468 | glcE | +0.2 | 1.3 | glycolate oxidase FAD binding subunit (NCBI) | compare |
| b1287 | yciW | +0.2 | 1.2 | putative oxidoreductase (VIMSS) | compare |
| b4380 | yjjI | +0.2 | 1.8 | hypothetical protein (NCBI) | compare |
| b4176 | yjeT | +0.2 | 1.4 | conserved inner membrane protein (NCBI) | compare |
| b2302 | yfcG | +0.2 | 1.7 | predicted glutathione S-transferase (NCBI) | compare |
| b4480 | hdfR | +0.2 | 1.5 | transcriptional regulator HdfR (NCBI) | compare |
| b2783 | chpR | +0.2 | 0.8 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b2454 | eutJ | +0.2 | 1.9 | predicted chaperonin, ethanolamine utilization protein (NCBI) | compare |
| b0765 | modC | +0.2 | 1.6 | molybdate transporter subunit (NCBI) | compare |
| b4561 | insM | +0.2 | 1.3 | transposase (RefSeq) | compare |
| b2510 | b2510 | +0.2 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1376 | ynaF | +0.2 | 1.5 | putative filament protein (VIMSS) | compare |
| b0933 | ssuB | +0.2 | 1.2 | alkanesulfonate transporter subunit (NCBI) | compare |
| b1079 | flgH | +0.2 | 1.5 | flagellar L-ring protein precursor H (NCBI) | compare |
| b2426 | ucpA | +0.2 | 1.0 | putative oxidoreductase (VIMSS) | compare |
| b1683 | ynhE | +0.2 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2622 | intA | +0.2 | 1.5 | CP4-57 prophage; integrase (NCBI) | compare |
| b4409 | blr | +0.2 | 1.6 | beta-lactam resistance membrane protein (NCBI) | compare |
| b1153 | ymfQ | +0.2 | 1.1 | e14 prophage; conserved protein (NCBI) | compare |
| b2794 | yqcD | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b4325 | yjiC | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2481 | hyfA | +0.2 | 1.2 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b3844 | fre | +0.2 | 1.4 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1586 | b1586 | +0.2 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4522 | yciX_1 | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b4481 | rffT | +0.2 | 1.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1339 | abgR | +0.2 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2776 | ygcE | +0.2 | 1.7 | predicted kinase (NCBI) | compare |
| b1487 | ddpA | +0.2 | 1.5 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b0521 | ybcF | +0.2 | 1.2 | predicted carbamate kinase (NCBI) | compare |
| b2738 | ygbL | +0.2 | 1.2 | hypothetical protein (NCBI) | compare |