Experiment set41IT004 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most important genes:

  gene name fitness t score description  
PP_4874 -2.6 -2.3 50S ribosomal protein L9 compare
PP_2378 -2.1 -2.0 Fe/S biogenesis protein NfuA compare
PP_1215 -2.0 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4902 -2.0 -3.3 Oligoribonuclease compare
PP_1493 -1.9 -4.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4964 -1.8 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_2414 -1.8 -2.2 conserved exported protein of unknown function compare
PP_3052 -1.7 -1.8 conserved protein of unknown function compare
PP_1654 -1.6 -1.1 cysteine synthase B compare
PP_0164 -1.6 -3.1 conserved protein of unknown function compare
PP_1294 -1.5 -4.1 molybdopterin synthase large subunit compare
PP_0406 -1.5 -2.5 Nucleotidyltransferase family protein compare
PP_1237 -1.5 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3449 -1.4 -3.0 conserved exported protein of unknown function compare
PP_5327 -1.4 -3.5 putative phosphate ABC transporter, permease subunit compare
PP_0218 -1.3 -5.7 Sensory box protein compare
PP_1045 -1.3 -1.7 Type II secretion pathway protein XcpP compare
PP_0833 -1.2 -1.3 queuine tRNA-ribosyltransferase compare
PP_3765 -1.2 -3.5 H-NS family protein MvaT compare
PP_0393 -1.2 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0513 -1.1 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1428 -1.1 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_1763 -1.1 -2.4 putative oxidoreductase compare
PP_1734 -1.1 -2.3 Probable septum site-determining protein MinC compare
PP_0127 -1.1 -1.8 Thiol:disulfide interchange protein compare
PP_0872 -1.1 -4.0 Peptide chain release factor 3 compare
PP_3098 -1.1 -1.3 conserved protein of unknown function compare
PP_5114 -1.0 -2.3 putative adenine methyltransferase compare
PP_4379 -1.0 -2.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1994 -1.0 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1214 -1.0 -2.0 putative transcriptional regulatory protein compare
PP_0293 -1.0 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4997 -1.0 -2.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1269 -1.0 -1.4 Universal stress protein family compare
PP_4394 -1.0 -3.7 flagella basal body P-ring formation protein compare
PP_5456 -1.0 -1.9 conserved protein of unknown function compare
PP_0290 -1.0 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4129 -1.0 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5331 -1.0 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4517 -0.9 -1.7 conserved protein of unknown function compare
PP_0063 -0.9 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0630 -0.9 -1.4 DNA gyrase inhibitor YacG compare
PP_0914 -0.9 -5.4 GGDEF domain protein compare
PP_4383 -0.9 -3.3 Flagellar P-ring protein compare
PP_1664 -0.9 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_4424 -0.9 -2.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0087 -0.9 -2.0 conserved exported protein of unknown function compare
PP_0292 -0.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -0.9 -2.8 Phosphoadenosine phosphosulfate reductase compare
PP_4358 -0.9 -3.7 flagellar synthesis, switching and energizing component compare
PP_4391 -0.9 -4.1 flagellar basal-body rod protein FlgB compare
PP_1185 -0.9 -3.4 Outer membrane protein H1 compare
PP_5533 -0.9 -1.5 conserved protein of unknown function compare
PP_4373 -0.9 -6.3 Transcriptional regulator FleQ compare
PP_t11 -0.9 -2.2 tRNA-Lys compare
PP_5328 -0.9 -1.3 putative phosphate transport system permease protein compare
PP_5095 -0.9 -0.7 pyrroline-5-carboxylate reductase compare
PP_2740 -0.9 -1.6 Transcriptional regulator, MerR family compare
PP_2302 -0.9 -3.0 DNA-binding, ATP-dependent protease compare
PP_4215 -0.9 -3.1 pyoverdine biosynthesis related protein compare
PP_0435 -0.8 -3.4 Peptidase, M23/M37 family compare
PP_0846 -0.8 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_4880 -0.8 -4.5 exoribonuclease R compare
PP_5652 -0.8 -1.4 conserved protein of unknown function, phage origin compare
PP_2145 -0.8 -2.1 beta-N-acetylglucosaminidase compare
PP_2416 -0.8 -1.9 putative Iron ABC transporter, ATP-binding protein compare
PP_2402 -0.8 -1.1 putative Sensor histidine kinase compare
PP_5338 -0.8 -2.3 aspartate ammonia-lyase compare
PP_4386 -0.8 -3.5 flagellar basal-body rod protein FlgF compare
PP_5014 -0.8 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0998 -0.8 -3.9 conserved protein of unknown function compare
PP_4122 -0.8 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1568 -0.8 -1.1 conserved protein of unknown function compare
PP_5027 -0.8 -1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5230 -0.8 -2.0 Tyrosine recombinase XerC compare
PP_1001 -0.8 -2.1 arginine deiminase compare
PP_5706 -0.8 -1.3 Sec translocation complex - SecG subunit compare
PP_4265 -0.8 -1.5 DNA-binding transcriptional dual regulator compare
PP_3580 -0.8 -1.5 conserved protein of unknown function compare
PP_1697 -0.7 -2.0 transcriptional regulator, GntR family compare
PP_4343 -0.7 -3.1 Flagellar biosynthesis protein FlhF compare
PP_5473 -0.7 -1.1 putative transcriptional regulator, LuxR family compare
PP_4354 -0.7 -1.9 flagellar export apparatus subunit compare
PP_4355 -0.7 -1.4 flagellar export apparatus subunit compare
PP_4365 -0.7 -3.1 Flagellar protein FliJ compare
PP_1310 -0.7 -2.2 conserved hypothetical protein compare
PP_4368 -0.7 -2.7 flagellar motor switch protein compare
PP_3730 -0.7 -1.8 Transcriptional regulatory protein AruR compare
PP_1468 -0.7 -1.5 Tyrosine recombinase XerD compare
PP_0303 -0.7 -2.9 dehydrocarnitine cleavage enzyme compare
PP_2449 -0.7 -3.0 conserved protein of unknown function compare
PP_1187 -0.7 -2.7 sensor protein compare
PP_5053 -0.7 -4.0 Protein-export protein SecB compare
PP_4342 -0.7 -1.8 flagellar synthesis regulator, putative ATPase compare
PP_1083 -0.7 -2.2 (2Fe-2S)-binding protein compare
PP_1034 -0.7 -4.3 multicopper oxidase compare
PP_5058 -0.7 -2.3 Carboxy-terminal-processing protease compare
PP_4546 -0.7 -2.1 ATP-dependent helicase HrpA compare
PP_0025 -0.7 -1.2 hypothetical protein compare
PP_2025 -0.7 -2.1 Exonuclease SbcD compare
PP_4944 -0.7 -1.8 Carbamoyltransferase compare
PP_4366 -0.7 -4.7 flagellum-specific ATP synthase compare
PP_4121 -0.7 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4066 -0.7 -1.7 methylglutaconyl-CoA hydratase compare
PP_4504 -0.7 -1.3 conserved exported protein of unknown function compare
PP_0405 -0.7 -3.8 conserved protein of unknown function compare
PP_4482 -0.7 -1.9 Transcriptional regulator, AraC family compare
PP_0963 -0.7 -1.7 putative BolA family protein compare
PP_5505 -0.6 -1.5 conserved transmembrane protein of unknown function compare
PP_0166 -0.6 -4.8 HlyD family secretion protein compare
PP_0167 -0.6 -5.4 Toxin secretion ATP-binding protein compare
PP_3332 -0.6 -2.2 putative cytochrome c-type protein compare
PP_3942 -0.6 -2.9 maleate isomerase compare
PP_4642 -0.6 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_5546 -0.6 -1.3 conserved protein of unknown function compare
PP_4367 -0.6 -1.8 Flagellar assembly protein FliH compare
PP_4797 -0.6 -1.6 conserved protein of unknown function compare
PP_1766 -0.6 -2.2 methylthioribose-1-phosphate isomerase compare
PP_5483 -0.6 -1.3 conserved protein of unknown function compare
PP_0832 -0.6 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2103 -0.6 -1.9 conserved protein of unknown function compare
PP_2144 -0.6 -1.8 Transcriptional regulator, TetR family compare
PP_3460 -0.6 -1.2 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5580 -0.6 -1.3 protein of unknown function compare
PP_0168 -0.6 -5.4 putative surface adhesion protein compare
PP_5628 -0.6 -1.8 conserved protein of unknown function compare
PP_4094 -0.6 -1.4 conserved protein of unknown function compare
PP_2309 -0.6 -0.9 conserved protein of unknown function compare
PP_0326 -0.6 -2.1 sarcosine oxidase subunit gamma compare
PP_4519 -0.6 -4.4 Agglutination protein compare
PP_5028 -0.6 -1.9 proline iminopeptidase compare
PP_4240 -0.6 -2.0 putative Microcin b17 processing protein mcbd compare
PP_3603 -0.6 -2.6 Transcriptional regulator, GntR family compare
PP_4120 -0.6 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_1774 -0.6 -1.4 conserved exported protein of unknown function compare
PP_4004 -0.6 -1.7 DNA translocase FtsK compare
PP_1783 -0.6 -0.5 dTDP-glucose pyrophosphorylase compare
PP_1087 -0.6 -3.3 Outer membrane protein, OmpA family compare
PP_4690 -0.6 -1.9 Rieske 2Fe-2S family protein compare
PP_0165 -0.6 -4.5 GGDEF domain protein compare
PP_3164 -0.6 -1.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3496 -0.6 -2.2 Endoribonuclease L-PSP compare
PP_2371 -0.6 -2.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1362 -0.6 -1.6 pyruvate kinase II compare
PP_4720 -0.6 -1.6 putative RNA binding protein compare
PP_4369 -0.6 -3.0 Flagellar M-ring protein compare
PP_1829 -0.6 -1.4 Hydrolase, alpha/beta fold family compare
PP_4377 -0.6 -2.1 putative Flagellin FlaG compare
PP_5528 -0.6 -0.9 conserved protein of unknown function compare
PP_4835 -0.6 -1.4 conserved exported protein of unknown function compare
PP_3407 -0.6 -1.6 conserved protein of unknown function compare
PP_4081 -0.6 -2.9 putative type 4/6 secretion system compare
PP_4941 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4645 -0.6 -1.3 Large-conductance mechanosensitive channel compare
PP_4156 -0.6 -1.4 Transcriptional regulator, LysR family compare
PP_0672 -0.6 -4.7 Sensory box protein compare
PP_5310 -0.6 -2.3 junction-specific ATP-dependent DNA helicase compare
PP_1556 -0.6 -1.8 conserved protein of unknown function compare
PP_4569 -0.6 -1.3 conserved protein of unknown function compare
PP_5279 -0.6 -1.8 conserved protein of unknown function compare
PP_2442 -0.6 -1.1 conserved protein of unknown function, DUF480 family compare
PP_1629 -0.5 -2.4 Protein RecA compare
PP_3876 -0.5 -0.9 conserved protein of unknown function compare
PP_2320 -0.5 -3.0 conserved exported protein of unknown function compare
PP_2322 -0.5 -1.5 Major outer membrane lipoprotein compare
PP_3587 -0.5 -1.9 lipid hydroperoxide peroxidase compare
PP_0153 -0.5 -0.9 hypothetical protein compare
PP_4131 -0.5 -1.9 NADH-quinone oxidoreductase subunit N compare
PP_0306 -0.5 -1.5 conserved protein of unknown function compare
PP_1122 -0.5 -1.1 OmpA family protein compare
PP_4267 -0.5 -2.2 Recombination protein RecR compare
PP_3861 -0.5 -1.3 Phage FluMu protein gp46 compare
PP_1867 -0.5 -2.1 conserved protein of unknown function compare
PP_5350 -0.5 -1.4 Transcriptional regulator, RpiR family compare
PP_0919 -0.5 -1.7 conserved protein of unknown function compare
PP_1559 -0.5 -1.9 Holin compare
PP_1678 -0.5 -1.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4384 -0.5 -3.3 Flagellar L-ring protein compare
PP_5352 -0.5 -3.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0725 -0.5 -1.7 conserved hypothetical TPR repeat protein compare
PP_4353 -0.5 -2.1 Flagellar biosynthetic protein fliR compare
PP_4370 -0.5 -1.7 Flagellar hook-basal body complex protein FliE compare
PP_1164 -0.5 -1.1 Transcriptional regulator, LysR family compare
PP_0961 -0.5 -2.6 toluene tolerance protein compare
PP_2396 -0.5 -1.8 conserved exported protein of unknown function compare
PP_2415 -0.5 -1.9 putative acetyltransferase, GNAT family compare
PP_3239 -0.5 -0.8 putative cointegrate resolution protein T Tn4652 compare
PP_1176 -0.5 -0.7 conserved protein of unknown function compare
PP_1004 -0.5 -1.2 conserved protein of unknown function compare
PP_2785 -0.5 -1.7 conserved exported protein of unknown function compare
PP_4560 -0.5 -1.6 putative Ribonuclease BN compare
PP_3891 -0.5 -1.6 conserved protein of unknown function compare
PP_5198 -0.5 -1.6 conserved protein of unknown function compare
PP_4348 -0.5 -1.7 putative Cystathionine beta-lyase compare
PP_4162 -0.5 -1.7 conserved membrane protein of unknown function compare
PP_5491 -0.5 -0.9 conserved protein of unknown function with SEC-C motif domain compare
PP_0188 -0.5 -2.3 putative Uroporphyrin-III C-methyltransferase compare
PP_4989 -0.5 -1.6 Protein PilJ compare
PP_4228 -0.5 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no phage control experiments