Experiment set41IT004 for Pseudomonas putida KT2440

Compare to:

No phage control

200 most detrimental genes:

  gene name fitness t score description  
PP_1208 +1.5 2.3 conserved protein of unknown function, SlyX family compare
PP_2142 +1.0 3.0 Cell division inhibitor SulA compare
PP_4952 +1.0 2.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1008 +0.9 2.9 RNA polymerase subunit sigma-24 compare
PP_2510 +0.9 1.6 conserved protein of unknown function compare
PP_2459 +0.9 2.6 ribose pyranase compare
PP_5705 +0.9 1.8 protein of unknown function compare
PP_5674 +0.8 2.3 conserved protein of unknown function compare
PP_2429 +0.8 1.2 putative Membrane protein compare
PP_2341 +0.8 1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0151 +0.8 2.7 conserved exported protein of unknown function compare
PP_5039 +0.8 2.7 conserved protein of unknown function compare
PP_3487 +0.8 1.9 conserved exported protein of unknown function compare
PP_2337 +0.8 1.7 aconitate isomerase compare
PP_5445 +0.8 1.9 conserved protein of unknown function compare
PP_1826 +0.7 2.1 Hydrolase, isochorismatase family compare
PP_5008 +0.7 1.5 Poly granule-associated protein compare
PP_4069 +0.7 2.8 conserved protein of unknown function compare
PP_2611 +0.7 2.3 membrane protein of unknown function compare
PP_1692 +0.7 1.8 conserved protein of unknown function compare
PP_0319 +0.7 1.7 conserved protein of unknown function compare
PP_2060 +0.7 1.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0007 +0.7 2.4 conserved hypothetical protein compare
PP_0152 +0.7 1.8 conserved exported protein of unknown function compare
PP_4789 +0.7 2.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5525 +0.6 2.1 conserved exported protein of unknown function compare
PP_t12 +0.6 1.0 tRNA-Thr compare
PP_2972 +0.6 1.1 conserved protein of unknown function compare
PP_3808 +0.6 1.5 Antibiotic synthesis protein MbtH compare
PP_3191 +0.6 2.2 putative threonine ammonia-lyase / dehydratase compare
PP_0607 +0.6 2.2 putative Type IV pili biogenesis protein FimT compare
PP_3473 +0.6 2.8 curli secretion and assembly outer membrane associated component compare
PP_4136 +0.6 1.0 Transcriptional regulator, LuxR family compare
PP_3508 +0.6 2.3 Protein CobW compare
PP_4828 +0.6 1.0 Precorrin-8X methylmutase compare
PP_5176 +0.6 2.0 conserved protein of unknown function compare
PP_5572 +0.6 1.9 protein of unknown function compare
PP_5486 +0.6 1.1 conserved protein of unknown function compare
PP_2231 +0.6 2.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1218 +0.6 1.8 putative acyl-CoA thioesterase compare
PP_2403 +0.6 1.0 Chemotaxis protein CheY compare
PP_3102 +0.6 2.0 conserved protein of unknown function compare
PP_1326 +0.6 2.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3926 +0.6 1.1 short-chain dehydrogenase compare
PP_2939 +0.6 2.3 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2509 +0.6 2.2 conserved protein of unknown function compare
PP_1128 +0.6 1.8 OmpA family protein compare
PP_4488 +0.6 2.6 conserved exported protein of unknown function compare
PP_2498 +0.6 2.7 conserved protein of unknown function compare
PP_5106 +0.6 2.0 conserved inner membrane protein compare
PP_4687 +0.6 2.5 Hemin import ATP-binding protein HmuV compare
PP_0125 +0.6 1.9 putative cytochrome c-type protein compare
PP_4910 +0.5 0.9 conserved protein of unknown function compare
PP_2061 +0.5 2.1 conserved protein of unknown function compare
PP_4966 +0.5 1.8 transcriptional regulator of methionine metabolism compare
PP_0313 +0.5 1.9 putative electron transfer flavoprotein beta subunit compare
PP_1349 +0.5 2.3 ATP:cob(I)alamin adenosyltransferase compare
PP_1729 +0.5 1.1 conserved protein of unknown function compare
PP_2462 +0.5 1.6 conserved protein of unknown function compare
PP_1508 +0.5 1.9 conserved protein of unknown function compare
PP_0621 +0.5 1.9 conserved protein of unknown function compare
PP_1831 +0.5 3.2 putative Membrane protein compare
PP_5561 +0.5 2.4 conserved protein of unknown function compare
PP_0213 +0.5 2.9 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4942 +0.5 1.0 conserved protein of unknown function compare
PP_1439 +0.5 0.9 conserved exported protein of unknown function compare
PP_1353 +0.5 1.9 conserved membrane protein of unknown function compare
PP_2793 +0.5 1.1 Acyl-CoA dehydrogenase family protein compare
PP_4205 +0.5 2.3 mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3512 +0.5 2.3 conserved membrane protein of unknown function compare
PP_1679 +0.5 0.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5496 +0.5 1.5 conserved exported protein of unknown function compare
PP_3082 +0.5 3.2 putative Membrane protein compare
PP_4009 +0.5 1.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_4233 +0.5 1.9 putative Oxidoreductase, small subunit compare
PP_0132 +0.5 2.8 Alginate biosynthesis sensor protein KinB compare
PP_0086 +0.5 1.8 conserved protein of unknown function compare
PP_1709 +0.5 1.3 Fumarylacetoacetate hydrolase family protein compare
PP_5654 +0.5 1.4 putative phosphotriesterase compare
PP_2622 +0.5 1.2 conserved protein of unknown function compare
PP_1198 +0.5 1.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5647 +0.5 2.7 conserved protein of unknown function compare
PP_3935 +0.5 1.7 conserved protein of unknown function compare
PP_1812 +0.5 1.3 conserved protein of unknown function compare
PP_1099 +0.5 0.9 Cold shock protein CapB compare
PP_1363 +0.5 2.8 conserved protein of unknown function compare
PP_5675 +0.5 1.6 conserved protein of unknown function compare
PP_1207 +0.5 1.7 conserved protein of unknown function compare
PP_3899 +0.5 1.3 conserved protein of unknown function, hicB family compare
PP_1521 +0.5 2.0 conserved protein of unknown function compare
PP_2503 +0.5 1.5 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_5167 +0.5 1.0 conserved hypothetical protein compare
PP_1716 +0.5 0.6 Transcriptional regulator, Cro/CI family compare
PP_0921 +0.5 2.0 Transcriptional regulator, ArsR family compare
PP_0206 +0.5 2.0 Ferredoxin, 4Fe-4S compare
PP_5051 +0.5 1.6 conserved protein of unknown function compare
PP_1655 +0.5 2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1691 +0.5 1.2 conserved protein of unknown function compare
PP_4691 +0.5 2.1 sugar fermentation stimulation protein A compare
PP_5586 +0.5 1.8 exported protein of unknown function compare
PP_t13 +0.5 1.3 tRNA-Lys compare
PP_4180 +0.5 1.7 conserved protein of unknown function compare
PP_2624 +0.5 1.9 conserved protein of unknown function compare
PP_5100 +0.5 1.4 dITP/XTP pyrophosphatase compare
PP_2422 +0.5 2.0 conserved protein of unknown function compare
PP_3014 +0.5 1.5 conserved exported protein of unknown function compare
PP_5475 +0.5 1.0 conserved protein of unknown function compare
PP_t29 +0.5 0.9 tRNA-Ala compare
PP_3648 +0.5 2.1 Carboxymuconolactone decarboxylase family protein compare
PP_2533 +0.5 1.8 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1649 +0.5 1.8 D-lactate dehydrogenase compare
PP_3409 +0.5 1.2 putative Cobalamin biosynthesis protein cobE compare
PP_3338 +0.5 2.1 putative cytochrome bd-type quinol oxidase compare
PP_4226 +0.4 1.3 conserved protein of unknown function compare
PP_2340 +0.4 1.4 conserved protein of unknown function compare
PP_3898 +0.4 1.7 conserved protein of unknown function compare
PP_4266 +0.4 1.9 Adenine phosphoribosyltransferase compare
PP_3141 +0.4 2.4 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_5520 +0.4 1.7 conserved protein of unknown function compare
PP_2916 +0.4 2.1 riboflavin synthase compare
PP_4837 +0.4 1.5 conserved protein of unknown function compare
PP_2737 +0.4 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1143 +0.4 2.0 3-hydroxyisobutyrate dehydrogenase family protein compare
PP_5495 +0.4 1.2 protein of unknown function compare
PP_0126 +0.4 1.4 Cytochrome c4 compare
PP_5712 +0.4 1.3 conserved protein of unknown function compare
PP_2678 +0.4 1.5 putative Hydrolase compare
PP_0439 +0.4 1.8 conserved protein of unknown function compare
PP_1131 +0.4 1.4 outer membrane lipoprotein compare
PP_2214 +0.4 1.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2616 +0.4 1.4 conserved protein of unknown function compare
PP_4808 +0.4 0.7 23S rRNA m3psi1915 methyltransferase compare
PP_1529 +0.4 2.2 Probable cysteine desulfurase compare
PP_4214 +0.4 1.5 pyoverdine biosynthesis related protein compare
PP_2631 +0.4 0.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0035 +0.4 1.5 putative bactoprenol-linked glycose transferase compare
PP_2857 +0.4 0.5 conserved exported protein of unknown function compare
PP_4820 +0.4 2.2 tRNA-dihydrouridine synthase B compare
PP_5391 +0.4 2.4 conserved hypothetical protein compare
PP_3618 +0.4 1.5 conserved protein of unknown function compare
PP_2446 +0.4 1.7 conserved exported protein of unknown function compare
PP_3803 +0.4 2.1 putative Cation ABC transporter, permease protein compare
PP_0710 +0.4 2.2 conserved protein of unknown function compare
PP_5667 +0.4 1.2 putative microcin B17-like-processing protein, McbC family compare
PP_2490 +0.4 1.8 Flavoprotein compare
PP_0220 +0.4 1.8 methionine import ATP-binding protein metN2 compare
PP_0550 +0.4 1.3 conserved protein of unknown function compare
PP_3539 +0.4 0.9 putative Transcriptional regulator compare
PP_2700 +0.4 1.3 AhpC/TSA family protein compare
PP_5201 +0.4 1.0 conserved protein of unknown function, UPF0149 family compare
PP_3064 +0.4 1.2 Phage tail protein compare
PP_2192 +0.4 1.1 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_2718 +0.4 1.0 arsenic resistance transcriptional regulator compare
PP_5390 +0.4 1.8 conserved hypothetical protein compare
PP_4598 +0.4 2.2 conserved membrane protein of unknown function compare
PP_3909 +0.4 1.8 conserved protein of unknown function compare
PP_1550 +0.4 1.5 Transcriptional regulator, Cro/CI family compare
PP_0145 +0.4 1.7 Na+/Pi-cotransporter compare
PP_1442 +0.4 1.1 conserved protein of unknown function compare
PP_3908 +0.4 1.6 conserved protein of unknown function compare
PP_3906 +0.4 1.2 conserved protein of unknown function compare
PP_1020 +0.4 0.8 putative glucose-6-phosphate 1-epimerase compare
PP_4844 +0.4 1.5 putative Urea ABC transporter, ATP-binding protein compare
PP_4738 +0.4 1.1 conserved exported protein of unknown function compare
PP_0633 +0.4 1.9 Type 4 fimbrial assembly protein PilC compare
PP_1561 +0.4 1.6 putative Phage holin compare
PP_3850 +0.4 1.8 conserved protein of unknown function compare
PP_2304 +0.4 1.9 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_3179 +0.4 1.8 Transcriptional regulator, LysR family compare
PP_0553 +0.4 1.7 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_1146 +0.4 2.3 conserved exported protein of unknown function compare
PP_5054 +0.4 0.8 glutaredoxin 3 compare
PP_5604 +0.4 0.8 putative subtilisin-like serine protease compare
PP_5516 +0.4 1.9 protein of unknown function compare
PP_2140 +0.4 1.7 conserved protein of unknown function compare
PP_4018 +0.4 0.9 Acetyltransferase, GNAT family compare
PP_5702 +0.4 1.3 conserved protein of unknown function compare
PP_0377 +0.4 0.7 coenzyme PQQ synthesis protein D compare
PP_4662 +0.4 1.1 conserved protein of unknown function compare
PP_1481 +0.4 2.1 medium chain aldehyde dehydrogenase compare
PP_2575 +0.4 0.9 conserved exported protein of unknown function compare
PP_1307 +0.4 1.1 AsnC family transcriptional regulator compare
PP_3947 +0.4 1.6 nicotinate dehydrogenase subunit A compare
PP_2540 +0.4 1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2896 +0.4 1.8 conserved protein of unknown function compare
PP_0429 +0.4 2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0656 +0.4 1.7 putative Amino acid ABC transporter, permease protein compare
PP_5225 +0.4 0.9 frataxin compare
PP_2750 +0.4 1.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2684 +0.4 1.3 conserved membrane protein of unknown function compare
PP_1605 +0.4 1.2 Ribonuclease HII compare
PP_2173 +0.4 2.0 Transcriptional regulator, AraC family compare
PP_1999 +0.4 0.8 membrane protein required for colicin V production compare
PP_4710 +0.4 2.4 tRNA pseudouridine 55 synthase compare
PP_1864 +0.4 1.3 conserved protein of unknown function compare
PP_2667 +0.4 2.4 ABC transporter compare
PP_2474 +0.4 0.9 Glutathione S-transferase family protein compare
PP_1186 +0.4 0.6 two component system DNA-binding transcriptional dual regulator compare
PP_4833 +0.4 1.5 SURF1 domain protein compare
PP_0628 +0.4 1.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no phage control experiments