Experiment set40IT096 for Pseudomonas putida KT2440

Compare to:

P. putida Sci Big MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_5597 -5.5 -3.0 conserved protein of unknown function compare
PP_3770 -4.7 -3.0 conserved protein of unknown function compare
PP_1008 -4.6 -2.5 RNA polymerase subunit sigma-24 compare
PP_1829 -4.5 -2.5 Hydrolase, alpha/beta fold family compare
PP_2031 -4.3 -2.4 conserved protein of unknown function compare
PP_4555 -3.8 -2.6 conserved protein of unknown function compare
PP_5267 -3.7 -2.2 putative cytochrome c5 compare
PP_3052 -3.7 -1.2 conserved protein of unknown function compare
PP_0593 -3.7 -1.2 putative ribosome-binding factor compare
PP_5508 -3.6 -1.1 conserved protein of unknown function compare
PP_3105 -3.6 -2.0 conserved membrane protein of unknown function compare
PP_3730 -3.6 -1.6 Transcriptional regulatory protein AruR compare
PP_2794 -3.5 -1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4271 -3.5 -1.1 conserved protein of unknown function compare
PP_2306 -3.5 -1.5 conserved exported protein of unknown function compare
PP_2090 -3.4 -2.3 Uroporphyrinogen-III C-methyltransferase compare
PP_3505 -3.3 -1.8 conserved protein of unknown function compare
PP_2903 -3.3 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5594 -3.2 -1.4 conserved protein of unknown function compare
PP_4362 -3.2 -3.0 conserved protein of unknown function compare
PP_0989 -3.1 -3.3 glycine cleavage system H protein 1 compare
PP_3773 -2.9 -2.6 conserved protein of unknown function compare
PP_0293 -2.9 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_t12 -2.9 -0.9 tRNA-Thr compare
PP_3258 -2.9 -2.1 conserved protein of unknown function compare
PP_1268 -2.9 -2.0 putative HtrA suppressor protein sohA compare
PP_3903 -2.9 -1.7 conserved protein of unknown function compare
PP_5528 -2.8 -1.3 conserved protein of unknown function compare
PP_5456 -2.8 -1.1 conserved protein of unknown function compare
PP_1410 -2.8 -1.2 conserved protein of unknown function compare
PP_t29 -2.7 -1.6 tRNA-Ala compare
PP_2631 -2.7 -1.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1366 -2.7 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_3926 -2.6 -1.2 short-chain dehydrogenase compare
PP_2976 -2.6 -1.1 putative transposase compare
PP_0673 -2.5 -2.2 conserved protein of unknown function compare
PP_2737 -2.5 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1512 -2.5 -2.1 conserved protein of unknown function compare
PP_0025 -2.4 -1.3 hypothetical protein compare
PP_4989 -2.4 -2.4 Protein PilJ compare
PP_2186 -2.4 -2.5 putative Formate dehydrogenase, delta subunit compare
PP_3946 -2.4 -1.0 HTH-type transcriptional repressor NicR compare
PP_2898 -2.4 -1.7 conserved exported protein of unknown function compare
PP_2847 -2.3 -1.0 Urease accessory protein UreJ compare
PP_3840 -2.3 -1.0 conserved protein of unknown function compare
PP_1736 -2.3 -2.1 conserved protein of unknown function compare
PP_5338 -2.3 -2.7 aspartate ammonia-lyase compare
PP_0556 -2.3 -3.1 Acetoin catabolism protein compare
PP_0916 -2.3 -1.2 Amino acid transporter LysE compare
PP_4273 -2.2 -0.8 Transcriptional regulator, MerR family compare
PP_5083 -2.2 -3.0 putative Type IV pili biogenesis protein PilM compare
PP_5331 -2.2 -3.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5717 -2.2 -2.1 conserved protein of unknown function compare
PP_4581 -2.2 -2.3 putative amidotransferase compare
PP_3580 -2.2 -1.5 conserved protein of unknown function compare
PP_3315 -2.1 -2.1 conserved membrane protein of unknown function compare
PP_5600 -2.1 -1.6 conserved protein of unknown function compare
PP_5621 -2.1 -1.8 protein of unknown function compare
PP_2730 -2.1 -4.0 putative Lipoprotein compare
PP_2073 -2.1 -2.1 Acetyltransferase, GNAT family compare
PP_1074 -2.1 -2.7 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4828 -2.1 -0.9 Precorrin-8X methylmutase compare
PP_2738 -2.1 -3.1 putative Transcriptional regulator compare
PP_4952 -2.0 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2192 -2.0 -3.8 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_5533 -2.0 -1.1 conserved protein of unknown function compare
PP_2677 -2.0 -2.3 conserved exported protein of unknown function compare
PP_1097 -2.0 -0.8 Methionine--tRNA ligase compare
PP_1396 -2.0 -2.7 conserved protein of unknown function compare
PP_2129 -1.9 -2.8 conserved protein of unknown function compare
PP_5748 -1.9 -0.7 cytochrome c heme lyase subunit compare
PP_0643 -1.9 -1.4 protein of unknown function compare
PP_2411 -1.9 -3.7 Major facilitator family transporter compare
PP_0848 -1.9 -2.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1906 -1.9 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_5073 -1.8 -1.2 conserved exported protein of unknown function compare
PP_4534 -1.8 -4.0 conserved protein of unknown function compare
PP_2960 -1.8 -2.4 transcriptional regulator, AraC family compare
PP_3318 -1.8 -1.2 conserved protein of unknown function compare
PP_2429 -1.8 -1.1 putative Membrane protein compare
PP_1548 -1.8 -1.6 conserved protein of unknown function compare
PP_2622 -1.8 -1.6 conserved protein of unknown function compare
PP_0003 -1.8 -2.5 16S RNA methyltransferase compare
PP_5324 -1.7 -1.4 Response regulator compare
PP_3117 -1.7 -1.7 putative protein involved in error-prone processing of DNA lesions compare
PP_5054 -1.7 -1.7 glutaredoxin 3 compare
PP_0307 -1.7 -1.7 conserved exported protein of unknown function compare
PP_3409 -1.7 -1.8 putative Cobalamin biosynthesis protein cobE compare
PP_0407 -1.7 -3.2 DnaJ-like protein DjlA compare
PP_2137 -1.7 -1.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_2878 -1.7 -1.3 conserved protein of unknown function compare
PP_3863 -1.7 -2.6 putative Phage tail protein compare
PP_0007 -1.7 -2.3 conserved hypothetical protein compare
PP_3814 -1.7 -2.4 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0905 -1.7 -1.2 conserved exported protein of unknown function compare
PP_4739 -1.7 -1.3 conserved protein of unknown function compare
PP_1020 -1.6 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_3121 -1.6 -1.7 transcriptional regulator, LysR family compare
PP_0888 -1.6 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_3451 -1.6 -3.5 conserved exported protein of unknown function compare
PP_1709 -1.6 -2.1 Fumarylacetoacetate hydrolase family protein compare
PP_3487 -1.6 -2.2 conserved exported protein of unknown function compare
PP_3353 -1.6 -2.2 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_2330 -1.6 -2.3 conserved protein of unknown function compare
PP_2070 -1.6 -1.0 Transcriptional regulator, AraC family compare
PP_5202 -1.6 -1.5 putative cell division protein compare
PP_3398 -1.6 -1.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2798 -1.6 -2.6 putative Oxidoreductase compare
PP_3278 -1.6 -2.4 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit compare
PP_0236 -1.5 -1.5 NAD(P)H-dependent FMN reductase subunit compare
PP_3880 -1.5 -1.0 conserved exported protein of unknown function compare
PP_3625 -1.5 -1.7 Transporter, LysE family compare
PP_3733 -1.5 -4.1 putative ABC transporter lipoprotein compare
PP_5546 -1.5 -1.4 conserved protein of unknown function compare
PP_5143 -1.5 -1.6 conserved membrane protein of unknown function compare
PP_1644 -1.5 -2.8 NAD(P)H dehydrogenase (quinone) compare
PP_1519 -1.5 -3.4 putative Lipoprotein compare
PP_3447 -1.5 -0.9 conserved membrane protein of unknown function compare
PP_4645 -1.5 -2.2 Large-conductance mechanosensitive channel compare
PP_4591 -1.5 -2.1 Ribonuclease D compare
PP_2640 -1.5 -2.0 Acetyltransferase, GNAT family compare
PP_2757 -1.5 -3.9 putative Sugar-binding protein compare
PP_2409 -1.5 -1.7 cobalt-zinc-cadmium resistance protein compare
PP_2725 -1.5 -1.8 Protease PfpI compare
PP_2970 -1.5 -2.0 conserved exported protein of unknown function compare
PP_1876 -1.5 -1.4 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1142 -1.5 -0.8 conserved protein of unknown function compare
PP_1070 -1.5 -3.5 glutamate / aspartate ABC transporter - permease subunit compare
PP_4316 -1.5 -2.7 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3102 -1.5 -1.7 conserved protein of unknown function compare
PP_0064 -1.5 -2.8 conserved protein of unknown function compare
PP_2884 -1.5 -2.4 XRE family transcriptional regulator compare
PP_5225 -1.4 -1.1 frataxin compare
PP_5185 -1.4 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5701 -1.4 -1.0 conserved protein of unknown function compare
PP_0319 -1.4 -0.9 conserved protein of unknown function compare
PP_5270 -1.4 -3.5 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5598 -1.4 -1.5 conserved protein of unknown function compare
PP_2560 -1.4 -2.2 alkaline protease secretion transporter ATP-binding protein compare
PP_4164 -1.4 -2.4 Alpha/beta hydrolase compare
PP_0151 -1.4 -2.8 conserved exported protein of unknown function compare
PP_3563 -1.4 -1.6 conserved exported protein of unknown function compare
PP_4045 -1.4 -1.5 conserved protein of unknown function compare
PP_0312 -1.4 -2.7 electron transfer flavoprotein, alpha subunit compare
PP_2088 -1.4 -1.4 RNA polymerase sigma factor SigX compare
PP_3365 -1.4 -0.8 Acetolactate synthase compare
PP_2144 -1.3 -2.2 Transcriptional regulator, TetR family compare
PP_2846 -1.3 -1.4 urease accessory protein compare
PP_4910 -1.3 -2.0 conserved protein of unknown function compare
PP_1344 -1.3 -0.8 conserved protein of unknown function compare
PP_0992 -1.3 -3.0 conserved protein of unknown function, UPF0276 family compare
PP_0683 -1.3 -2.2 conserved protein of unknown function compare
PP_5140 -1.3 -1.5 Transcriptional regulator, MerR family compare
PP_1456 -1.3 -2.0 conserved membrane protein of unknown function compare
PP_3089 -1.3 -2.5 conserved protein of unknown function compare
PP_3455 -1.3 -2.8 Multidrug efflux RND membrane fusion protein compare
PP_2047 -1.3 -2.1 3-hydroxyacyl-CoA dehydrogenase family protein compare
PP_1842 -1.3 -2.9 Glutamine amidotransferase, class I compare
PP_0065 -1.3 -2.0 NAD-binding component of TrK potassium transporter compare
PP_3144 -1.3 -3.1 L-serine dehydratase compare
PP_2819 -1.3 -2.5 Outer membrane protein OprJ compare
PP_2068 -1.3 -4.1 putative Multidrug efflux MFS membrane fusion protein compare
PP_3824 -1.3 -2.2 conserved exported protein of unknown function compare
PP_1828 -1.3 -1.2 conserved protein of unknown function compare
PP_2726 -1.3 -1.6 conserved membrane protein of unknown function compare
PP_2559 -1.3 -1.8 Metalloprotease secretion protein compare
PP_1068 -1.3 -2.2 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_0082 -1.3 -3.3 tryptophan synthase alpha chain compare
PP_2539 -1.3 -2.2 Transcriptional regulator, LysR family compare
PP_3864 -1.3 -1.9 putative Phage FluMu DNA circulation protein compare
PP_4835 -1.3 -0.9 conserved exported protein of unknown function compare
PP_5499 -1.2 -1.4 conserved protein of unknown function compare
PP_3715 -1.2 -1.5 Muconate cycloisomerase 1 compare
PP_0202 -1.2 -2.4 CBS domain-containing protein compare
PP_1669 -1.2 -4.3 NLP/P60 family protein compare
PP_4957 -1.2 -1.8 conserved protein of unknown function compare
PP_5496 -1.2 -1.5 conserved exported protein of unknown function compare
PP_3244 -1.2 -1.4 Magnesium transporter, MgtC family compare
PP_1255 -1.2 -1.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_2836 -1.2 -1.7 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4897 -1.2 -2.8 N-acetylmuramoyl-L-alanine amidase compare
PP_4778 -1.2 -2.2 23S rRNA pseudouridine 2457 synthase compare
PP_0627 -1.2 -1.4 conserved protein of unknown function compare
PP_3512 -1.2 -1.8 conserved membrane protein of unknown function compare
PP_5272 -1.2 -2.9 conserved protein of unknown function compare
PP_1442 -1.2 -2.1 conserved protein of unknown function compare
PP_4582 -1.2 -1.8 conserved membrane protein of unknown function compare
PP_1748 -1.2 -2.7 conserved protein of unknown function compare
PP_5520 -1.2 -1.6 conserved protein of unknown function compare
PP_0949 -1.2 -3.1 putative ATP-binding protein UPF0042 compare
PP_2101 -1.2 -3.0 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_4625 -1.2 -1.4 anti-holin regulator of holin CidA compare
PP_1245 -1.2 -2.0 conserved exported protein of unknown function compare
PP_3978 -1.2 -2.0 conserved protein of unknown function compare
PP_2835 -1.2 -1.7 putative oxidoreductase compare
PP_2585 -1.2 -2.0 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PP_3283 -1.2 -2.3 1,2-epoxyphenylacetyl-CoA isomerase compare
PP_3162 -1.2 -2.0 benzoate 1,2-dioxygenase subunit beta compare
PP_4504 -1.2 -0.9 conserved exported protein of unknown function compare
PP_2412 -1.2 -2.0 ParA family protein compare


Specific Phenotypes

For 5 genes in this experiment