Experiment set40IT096 for Pseudomonas putida KT2440

Compare to:

P. putida Sci Big MOI 0.1

200 most detrimental genes:

  gene name fitness t score description  
PP_3821 +9.5 70.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4938 +8.7 61.6 putative Glycosyl transferase compare
PP_1776 +8.6 70.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1779 +8.6 42.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1802 +8.4 69.5 glycosyl transferase compare
PP_4943 +8.4 28.5 putative Glycosyl transferase compare
PP_1799 +8.3 60.8 GDP-mannose 4,6-dehydratase compare
PP_1801 +8.3 53.5 Glycosyl transferase WbpY compare
PP_1780 +8.3 72.1 putative mannosyltransferase compare
PP_1805 +8.2 65.4 Polysaccharide biosynthesis protein compare
PP_4936 +8.1 57.9 O-antigen polymerase compare
PP_1804 +8.0 43.7 Glycosyl transferase WbpL compare
PP_1800 +8.0 45.0 Oxidoreductase Rmd compare
PP_1778 +7.9 35.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4940 +7.8 59.8 Putative glycosyltransferase compare
PP_1803 +7.1 57.6 UDP-sugar epimerase compare
PP_4939 +6.1 10.3 conserved protein of unknown function compare
PP_4944 +5.5 8.2 Carbamoyltransferase compare
PP_1777 +5.4 21.2 phosphomannomutase compare
PP_4099 +5.2 43.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4942 +5.1 9.2 conserved protein of unknown function compare
PP_1650 +4.0 31.0 Sensor protein GacS compare
PP_4799 +3.7 1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4941 +3.7 11.3 conserved exported protein of unknown function compare
PP_4724 +3.4 3.5 Carbamoyl-phosphate synthase small chain compare
PP_0856 +3.3 2.1 conserved lipoprotein of unknown function compare
PP_4723 +3.2 3.0 Carbamoyl-phosphate synthase large chain compare
PP_2000 +2.9 2.6 amidophosphoribosyl transferase compare
PP_1775 +2.8 5.8 Metallo-beta-lactamase family protein compare
PP_0846 +2.8 3.6 DnaK-like molecular chaperone specific for IscU compare
PP_4999 +2.7 1.7 dihydroorotase-like protein compare
PP_4693 +2.7 7.1 RNA polymerase-binding transcription factor DksA compare
PP_1428 +2.3 4.7 Sigma factor AlgU negative regulatory protein compare
PP_0719 +2.3 2.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2145 +2.2 6.5 beta-N-acetylglucosaminidase compare
PP_1656 +2.2 8.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.2 4.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2615 +1.9 1.6 hemolysin-coregulated protein compare
PP_1774 +1.9 4.4 conserved exported protein of unknown function compare
PP_1781 +1.8 14.4 putative O-acyltransferase compare
PP_3239 +1.8 4.6 putative cointegrate resolution protein T Tn4652 compare
PP_0434 +1.7 5.8 Anhydro-N-acetylmuramic acid kinase compare
PP_3680 +1.7 13.9 conserved protein of unknown function compare
PP_2402 +1.6 2.3 putative Sensor histidine kinase compare
PP_1186 +1.6 3.0 two component system DNA-binding transcriptional dual regulator compare
PP_1293 +1.6 2.0 molybdopterin synthase small subunit compare
PP_4804 +1.6 2.5 RlpA-like lipoprotein compare
PP_5706 +1.6 2.5 Sec translocation complex - SecG subunit compare
PP_0962 +1.6 5.0 toluene-tolerance protein compare
PP_0405 +1.5 9.2 conserved protein of unknown function compare
PP_0339 +1.5 1.1 Pyruvate dehydrogenase E1 component compare
PP_5674 +1.5 3.6 conserved protein of unknown function compare
PP_3681 +1.5 9.7 putative Helicase compare
PP_1568 +1.5 1.9 conserved protein of unknown function compare
PP_0435 +1.5 6.3 Peptidase, M23/M37 family compare
PP_0855 +1.5 2.5 conserved protein of unknown function compare
PP_2718 +1.5 1.7 arsenic resistance transcriptional regulator compare
PP_1626 +1.5 5.5 DNA mismatch repair protein MutS compare
PP_3192 +1.5 3.0 conserved protein of unknown function compare
PP_0959 +1.5 2.2 phospholipid ABC transporter compare
PP_1783 +1.4 1.0 dTDP-glucose pyrophosphorylase compare
PP_0406 +1.4 3.7 Nucleotidyltransferase family protein compare
PP_2756 +1.4 1.3 conserved protein of unknown function compare
PP_4207 +1.4 2.8 conserved protein of unknown function compare
PP_5095 +1.4 0.8 pyrroline-5-carboxylate reductase compare
PP_1788 +1.4 2.6 conserved protein of unknown function compare
PP_2497 +1.4 3.0 conserved protein of unknown function compare
PP_0165 +1.4 9.9 GGDEF domain protein compare
PP_3411 +1.4 1.2 conserved protein of unknown function compare
PP_1355 +1.3 6.5 Muropeptide permease AmpG compare
PP_3576 +1.3 2.2 putative Transmembrane sensor compare
PP_5571 +1.3 1.7 conserved protein of unknown function compare
PP_2229 +1.3 2.7 putative K(+)/H(+) antiporter subunit C compare
PP_2247 +1.3 3.3 putative Endoribonuclease compare
PP_4679 +1.3 4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2253 +1.3 1.7 Transcriptional regulator, GntR family compare
PP_4004 +1.3 2.9 DNA translocase FtsK compare
PP_2403 +1.3 1.2 Chemotaxis protein CheY compare
PP_2675 +1.3 2.7 Cytochrome c-type protein compare
PP_5329 +1.3 2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1654 +1.2 0.8 cysteine synthase B compare
PP_0167 +1.2 9.5 Toxin secretion ATP-binding protein compare
PP_3892 +1.2 1.8 conserved protein of unknown function compare
PP_0960 +1.2 2.8 phospholipid ABC transporter binding protein compare
PP_4874 +1.2 1.6 50S ribosomal protein L9 compare
PP_4707 +1.2 1.8 OsmY-related protein compare
PP_0164 +1.2 3.7 conserved protein of unknown function compare
PP_2848 +1.2 2.8 urease accessory protein compare
PP_1513 +1.2 2.4 Ribosomal RNA small subunit methyltransferase J compare
PP_3040 +1.2 2.6 Pyocin R2_PP, holin compare
PP_4875 +1.2 3.7 conserved membrane protein of unknown function compare
PP_5093 +1.2 1.5 twitching motility protein compare
PP_5017 +1.2 1.2 Sec-independent protein translocase protein TatB compare
PP_2336 +1.2 2.5 aconitate hydratase 1 compare
PP_2029 +1.2 1.5 von Willebrand factor type A domain protein compare
PP_3187 +1.2 2.8 Cytosine transporter compare
PP_4726 +1.2 1.3 Chaperone protein DnaJ compare
PP_2231 +1.1 1.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0166 +1.1 8.3 HlyD family secretion protein compare
PP_4896 +1.1 4.4 DNA mismatch repair protein MutL compare
PP_2624 +1.1 2.6 conserved protein of unknown function compare
PP_0168 +1.1 9.5 putative surface adhesion protein compare
PP_0691 +1.1 0.8 Glutamate 5-kinase compare
PP_2810 +1.1 4.5 conserved exported protein of unknown function compare
PP_2337 +1.1 1.7 aconitate isomerase compare
PP_2806 +1.1 2.9 Transcriptional regulator, TetR family compare
PP_5429 +1.1 4.4 protein of unknown function compare
PP_4471 +1.1 2.3 Magnesium transporter compare
PP_2499 +1.1 1.7 conserved protein of unknown function compare
PP_3034 +1.1 2.8 putative Regulator protein compare
PP_3374 +1.1 1.9 conserved protein of unknown function compare
PP_1789 +1.1 4.0 Hydrolase, haloacid dehalogenase-like family compare
PP_2661 +1.0 3.0 conserved protein of unknown function compare
PP_1731 +1.0 2.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5465 +1.0 4.8 conserved protein of unknown function compare
PP_1763 +1.0 2.0 putative oxidoreductase compare
PP_1468 +1.0 0.8 Tyrosine recombinase XerD compare
PP_3109 +1.0 3.6 conserved protein of unknown function compare
PP_4254 +1.0 1.4 conserved protein of unknown function compare
PP_2987 +1.0 2.2 conserved protein of unknown function compare
PP_5494 +1.0 4.0 protein of unknown function compare
PP_1787 +1.0 2.2 conserved protein of unknown function compare
PP_5609 +1.0 2.1 conserved protein of unknown function compare
PP_4005 +1.0 2.2 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4214 +1.0 2.7 pyoverdine biosynthesis related protein compare
PP_2122 +1.0 2.4 molybdenum cofactor biosynthesis protein B compare
PP_2490 +1.0 3.7 Flavoprotein compare
PP_1216 +1.0 1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4961 +1.0 1.8 putative Lipoprotein compare
PP_5430 +1.0 2.6 protein of unknown function compare
PP_3027 +1.0 3.0 conserved protein of unknown function compare
PP_5216 +1.0 1.3 exopolyphosphatase compare
PP_3143 +1.0 2.3 Transcriptional regulator, LysR family compare
PP_2103 +1.0 2.0 conserved protein of unknown function compare
PP_4136 +1.0 0.9 Transcriptional regulator, LuxR family compare
PP_2475 +1.0 2.7 Transcriptional regulator, TetR family compare
PP_2510 +1.0 1.3 conserved protein of unknown function compare
PP_0958 +1.0 3.1 phospholipid ABC transporter ATP-binding subunit compare
PP_3164 +1.0 1.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4268 +0.9 0.8 nucleoid-associated broad specificity regulator compare
PP_2446 +0.9 2.4 conserved exported protein of unknown function compare
PP_4236 +0.9 2.7 putative Thiol:disulfide interchange protein dsbE compare
PP_5363 +0.9 4.0 conserved exported protein of unknown function compare
PP_4785 +0.9 1.8 conserved exported protein of unknown function compare
PP_1429 +0.9 1.8 Sigma factor AlgU regulatory protein MucB compare
PP_0035 +0.9 1.4 putative bactoprenol-linked glycose transferase compare
PP_1729 +0.9 1.3 conserved protein of unknown function compare
PP_1237 +0.9 1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4373 +0.9 6.1 Transcriptional regulator FleQ compare
PP_3738 +0.9 1.8 putative Transcriptional regulator VanR compare
PP_1560 +0.9 2.4 conserved protein of unknown function compare
PP_5486 +0.9 0.8 conserved protein of unknown function compare
PP_1225 +0.9 2.5 7-carboxy-7-deazaguanine synthase compare
PP_0513 +0.9 2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2864 +0.9 1.4 conserved protein of unknown function compare
PP_2883 +0.9 0.8 conserved protein of unknown function compare
PP_3649 +0.9 1.7 Transcriptional regulator, GntR family compare
PP_3478 +0.9 2.4 putative Secretion protein compare
PP_4156 +0.9 1.0 Transcriptional regulator, LysR family compare
PP_5610 +0.9 1.3 protein of unknown function compare
PP_5052 +0.9 2.2 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0585 +0.9 1.4 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2214 +0.9 2.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5572 +0.9 1.7 protein of unknown function compare
PP_0412 +0.9 3.7 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_3876 +0.9 1.5 conserved protein of unknown function compare
PP_5279 +0.9 1.4 conserved protein of unknown function compare
PP_3247 +0.9 2.2 Transporter, bile acid/Na+ symporter family compare
PP_1117 +0.9 4.7 conserved protein of unknown function compare
PP_3523 +0.9 1.7 conserved protein of unknown function compare
PP_0119 +0.9 1.8 putative zinc uptake regulation protein ZUR compare
PP_3522 +0.9 1.1 conserved protein of unknown function compare
PP_4738 +0.9 2.6 conserved exported protein of unknown function compare
PP_2472 +0.9 1.5 putative transcriptional regulator, MerR family compare
PP_0725 +0.9 2.2 conserved hypothetical TPR repeat protein compare
PP_3648 +0.9 1.5 Carboxymuconolactone decarboxylase family protein compare
PP_1124 +0.8 1.4 conserved membrane protein of unknown function compare
PP_2044 +0.8 0.8 conserved inner membrane protein of unknown function compare
PP_2801 +0.8 1.9 gamma-aminobutyraldehyde dehydrogenase compare
PP_0177 +0.8 2.5 conserved protein of unknown function compare
PP_3640 +0.8 2.8 Transcriptional regulator, AraC family compare
PP_2533 +0.8 1.6 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2462 +0.8 1.6 conserved protein of unknown function compare
PP_3559 +0.8 1.8 glycine betaine ABC transporter (permease) compare
PP_2813 +0.8 1.9 BNR domain protein compare
PP_2720 +0.8 0.9 conserved protein of unknown function compare
PP_2013 +0.8 2.4 conserved protein of unknown function compare
PP_2972 +0.8 1.1 conserved protein of unknown function compare
PP_1730 +0.8 1.9 Probable M18 family aminopeptidase 2 compare
PP_2087 +0.8 1.1 CmpX protein compare
PP_1573 +0.8 2.9 putative Major tail protein compare
PP_4094 +0.8 1.5 conserved protein of unknown function compare
PP_2433 +0.8 0.8 conserved protein of unknown function compare
PP_4993 +0.8 2.0 Glutathione synthetase compare
PP_2018 +0.8 2.2 adhesin-associated BNR repeat protein (from data) compare
PP_1786 +0.8 5.1 putative Glycosyl transferase compare
PP_3300 +0.8 3.4 Transcriptional regulator, tetR family compare
PP_1892 +0.8 1.5 conserved protein of unknown function compare
PP_2498 +0.8 2.4 conserved protein of unknown function compare
PP_1187 +0.8 2.8 sensor protein compare


Specific Phenotypes

For 5 genes in this experiment