Experiment set40IT090 for Pseudomonas putida KT2440

Compare to:

P. putida PUT10 MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_1650 -6.0 -34.7 Sensor protein GacS compare
PP_0540 -6.0 -9.1 conserved inner membrane protein compare
PP_0434 -5.9 -4.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4099 -5.8 -38.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0789 -5.6 -6.7 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5279 -5.6 -3.9 conserved protein of unknown function compare
PP_5114 -5.5 -5.4 putative adenine methyltransferase compare
PP_0405 -5.5 -8.4 conserved protein of unknown function compare
PP_4936 -5.4 -10.3 O-antigen polymerase compare
PP_1776 -5.2 -13.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1774 -5.2 -4.1 conserved exported protein of unknown function compare
PP_1803 -5.2 -11.0 UDP-sugar epimerase compare
PP_1355 -5.1 -11.4 Muropeptide permease AmpG compare
PP_0066 -5.1 -10.9 Ribosomal RNA small subunit methyltransferase B compare
PP_4726 -5.1 -3.5 Chaperone protein DnaJ compare
PP_1800 -4.9 -10.0 Oxidoreductase Rmd compare
PP_4938 -4.9 -12.8 putative Glycosyl transferase compare
PP_1801 -4.8 -11.6 Glycosyl transferase WbpY compare
PP_1627 -4.7 -10.4 conserved protein of unknown function compare
PP_1777 -4.7 -16.1 phosphomannomutase compare
PP_1805 -4.7 -19.5 Polysaccharide biosynthesis protein compare
PP_2148 -4.6 -13.9 transcription-repair coupling factor compare
PP_1780 -4.5 -17.3 putative mannosyltransferase compare
PP_1779 -4.5 -3.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1799 -4.5 -13.8 GDP-mannose 4,6-dehydratase compare
PP_1663 -4.5 -8.9 conserved exported protein of unknown function compare
PP_1764 -4.4 -3.1 Phosphoglycolate phosphatase 2 compare
PP_4874 -4.4 -3.8 50S ribosomal protein L9 compare
PP_3627 -4.4 -7.0 conserved protein of unknown function compare
PP_1802 -4.3 -16.4 glycosyl transferase compare
PP_1804 -4.3 -10.7 Glycosyl transferase WbpL compare
PP_2145 -4.2 -4.1 beta-N-acetylglucosaminidase compare
PP_2028 -4.1 -6.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1655 -4.0 -7.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1778 -4.0 -4.7 Lipopolysaccharide ABC export system, permease protein compare
PP_1871 -3.9 -6.4 Protease HtpX compare
PP_1326 -3.8 -3.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0435 -3.7 -7.4 Peptidase, M23/M37 family compare
PP_0406 -3.5 -3.4 Nucleotidyltransferase family protein compare
PP_5283 -3.4 -7.6 periplasmic dipeptide transport protein compare
PP_0725 -3.4 -7.5 conserved hypothetical TPR repeat protein compare
PP_4720 -3.3 -2.6 putative RNA binding protein compare
PP_5217 -3.3 -15.9 Polyphosphate kinase compare
PP_5145 -3.2 -21.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4944 -3.2 -3.1 Carbamoyltransferase compare
PP_1075 -3.0 -11.3 glycerol kinase compare
PP_1036 -3.0 -11.1 membrane-bound lytic murein transglycosylase F compare
PP_1204 -3.0 -6.3 putative Lipoprotein compare
PP_4171 -2.9 -13.4 conserved exported protein of unknown function compare
PP_1076 -2.9 -7.2 aquaglyceroporin compare
PP_0127 -2.7 -3.8 Thiol:disulfide interchange protein compare
PP_1798 -2.7 -10.3 Outer membrane efflux protein compare
PP_2027 -2.7 -6.7 conserved exported protein of unknown function compare
PP_5058 -2.7 -7.0 Carboxy-terminal-processing protease compare
PP_0959 -2.6 -3.9 phospholipid ABC transporter compare
PP_1702 -2.6 -4.5 Recombination-associated protein RdgC compare
PP_1770 -2.6 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1214 -2.6 -3.5 putative transcriptional regulatory protein compare
PP_2030 -2.6 -5.6 conserved protein of unknown function compare
PP_5146 -2.5 -9.3 RNA pyrophosphohydrolase compare
PP_0719 -2.5 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2029 -2.5 -2.7 von Willebrand factor type A domain protein compare
PP_0958 -2.4 -7.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0937 -2.4 -5.7 endoribonuclease G (RNAse G) compare
PP_4895 -2.4 -2.3 tRNA dimethylallyltransferase compare
PP_1237 -2.3 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2032 -2.3 -6.5 putative ATPase compare
PP_2402 -2.2 -2.5 putative Sensor histidine kinase compare
PP_1523 -2.2 -5.2 conserved protein of unknown function compare
PP_0960 -2.2 -5.2 phospholipid ABC transporter binding protein compare
PP_1789 -2.1 -4.8 Hydrolase, haloacid dehalogenase-like family compare
PP_3580 -2.1 -4.2 conserved protein of unknown function compare
PP_4217 -2.1 -15.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4515 -2.1 -9.0 Transcriptional regulator, MarR family compare
PP_0948 -2.0 -2.1 Phosphocarrier protein HPr compare
PP_2903 -2.0 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0164 -1.9 -5.3 conserved protein of unknown function compare
PP_5439 -1.9 -5.0 conserved protein of unknown function compare
PP_1918 -1.8 -11.0 septation protein compare
PP_4892 -1.8 -6.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4798 -1.8 -9.3 putative Membrane-bound lytic murein transglycosylase compare
PP_0794 -1.7 -5.1 1-phosphofructokinase monomer compare
PP_1656 -1.7 -6.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4964 -1.7 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_5278 -1.6 -5.0 4-guanidinobutyraldehyde dehydrogenase compare
PP_0962 -1.6 -2.6 toluene-tolerance protein compare
PP_0809 -1.6 -6.4 disulfide bond formation protein B compare
PP_5101 -1.6 -5.8 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_1410 -1.6 -1.8 conserved protein of unknown function compare
PP_1790 -1.6 -3.1 putative Acylneuraminate cytidylyltransferase compare
PP_2163 -1.5 -5.2 VacJ lipoprotein compare
PP_2031 -1.5 -2.5 conserved protein of unknown function compare
PP_4471 -1.5 -3.8 Magnesium transporter compare
PP_4199 -1.5 -1.2 putative Lipoprotein compare
PP_5100 -1.4 -3.3 dITP/XTP pyrophosphatase compare
PP_1468 -1.4 -2.9 Tyrosine recombinase XerD compare
PP_0941 -1.4 -4.5 putative ribosome associated protein compare
PP_1909 -1.4 -2.7 putative septum formation protein compare
PP_0691 -1.4 -1.6 Glutamate 5-kinase compare
PP_4971 -1.4 -7.7 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1626 -1.3 -4.6 DNA mismatch repair protein MutS compare
PP_t49 -1.3 -2.0 tRNA-Met compare
PP_4198 -1.3 -3.7 OmpA family protein compare
PP_1232 -1.3 -3.5 conserved exported protein of unknown function compare
PP_1216 -1.3 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4980 -1.3 -4.5 ATP-dependent RNA helicase compare
PP_4804 -1.3 -1.9 RlpA-like lipoprotein compare
PP_4805 -1.3 -6.4 membrane-bound lytic murein transglycosylase B compare
PP_0566 -1.2 -1.6 translation-related factor compare
PP_5039 -1.2 -2.4 conserved protein of unknown function compare
PP_5284 -1.2 -2.7 UPF0758 protein PP_5284 compare
PP_4098 -1.2 -1.3 UvrABC system protein C compare
PP_5270 -1.2 -5.3 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1775 -1.2 -1.5 Metallo-beta-lactamase family protein compare
PP_4490 -1.2 -6.3 phenylalanine-4-hydroxylase compare
PP_4008 -1.2 -3.6 ATP-dependent serine protease compare
PP_1807 -1.2 -5.2 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_5113 -1.2 -3.8 predicted Zn-dependent peptidases compare
PP_4570 -1.1 -7.8 conserved protein of unknown function compare
PP_4495 -1.1 -7.9 aromatic amino acid transport protein compare
PP_2568 -1.1 -1.6 Ring-cleaving dioxygenase compare
PP_1797 -1.1 -4.1 HlyD family secretion protein compare
PP_5329 -1.1 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5093 -1.1 -1.5 twitching motility protein compare
PP_2299 -1.1 -2.2 Trigger factor compare
PP_0872 -1.1 -3.6 Peptide chain release factor 3 compare
PP_3880 -1.1 -1.5 conserved exported protein of unknown function compare
PP_0007 -1.1 -2.0 conserved hypothetical protein compare
PP_5267 -1.1 -2.0 putative cytochrome c5 compare
PP_2499 -1.1 -1.7 conserved protein of unknown function compare
PP_0685 -1.0 -2.2 conserved protein of unknown function compare
PP_3409 -1.0 -2.5 putative Cobalamin biosynthesis protein cobE compare
PP_1783 -1.0 -1.1 dTDP-glucose pyrophosphorylase compare
PP_1279 -1.0 -3.4 Probable alginate O-acetylase AlgJ compare
PP_3769 -1.0 -3.5 conserved exported protein of unknown function compare
PP_0961 -1.0 -4.0 toluene tolerance protein compare
PP_4952 -1.0 -1.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3768 -1.0 -3.8 putative shikimate 5-dehydrogenase compare
PP_2098 -1.0 -5.2 D-alanyl-D-alanine carboxypeptidase compare
PP_2847 -1.0 -1.1 Urease accessory protein UreJ compare
PP_1176 -1.0 -1.0 conserved protein of unknown function compare
PP_5504 -1.0 -4.0 conserved protein of unknown function compare
PP_1217 -1.0 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1255 -1.0 -2.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_2747 -1.0 -1.4 conserved protein of unknown function compare
PP_4006 -0.9 -5.0 Putative arginyl-tRNA--protein transferase compare
PP_0401 -0.9 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_1020 -0.9 -2.6 putative glucose-6-phosphate 1-epimerase compare
PP_1632 -0.9 -1.4 conserved protein of unknown function compare
PP_0218 -0.9 -3.7 Sensory box protein compare
PP_2793 -0.9 -2.1 Acyl-CoA dehydrogenase family protein compare
PP_0610 -0.9 -2.6 conserved exported protein of unknown function compare
PP_0250 -0.9 -2.7 heat shock protein Hsp15 involved in ribosome recycling compare
PP_2060 -0.9 -2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4204 -0.9 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4966 -0.9 -2.0 transcriptional regulator of methionine metabolism compare
PP_4132 -0.9 -3.1 conserved protein of unknown function compare
PP_1309 -0.9 -4.6 conserved exported protein of unknown function compare
PP_4766 -0.9 -4.3 ATP-dependent RNA helicase compare
PP_4941 -0.8 -2.3 conserved exported protein of unknown function compare
PP_1826 -0.8 -2.3 Hydrolase, isochorismatase family compare
PP_5575 -0.8 -1.7 conserved protein of unknown function compare
PP_3037 -0.8 -2.4 C4-type zinc finger protein, DksA/TraR family compare
PP_0069 -0.8 -4.3 putative Rossmann fold nucleotide-binding protein compare
PP_1562 -0.8 -1.7 putative Phage terminase, small subunit compare
PP_5735 -0.8 -2.8 conserved hypothetical protein compare
PP_4848 -0.8 -2.4 Curved DNA-binding protein compare
PP_5007 -0.8 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5053 -0.8 -5.4 Protein-export protein SecB compare
PP_1730 -0.8 -2.9 Probable M18 family aminopeptidase 2 compare
PP_5SB -0.8 -2.3 5S ribosomal RNA compare
PP_2631 -0.8 -1.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2414 -0.8 -0.8 conserved exported protein of unknown function compare
PP_1111 -0.8 -3.2 putative Synthetase compare
PP_2291 -0.8 -2.0 conserved protein of unknown function compare
PP_0914 -0.8 -4.3 GGDEF domain protein compare
PP_0787 -0.8 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0928 -0.8 -6.1 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_5597 -0.8 -1.1 conserved protein of unknown function compare
PP_5487 -0.8 -2.3 conserved protein of unknown function compare
PP_1406 -0.8 -4.3 conserved protein of unknown function compare
PP_2005 -0.8 -3.1 conserved exported protein of unknown function compare
PP_3198 -0.8 -1.9 Ferredoxin, 2Fe-2S compare
PP_2459 -0.8 -1.5 ribose pyranase compare
PP_2999 -0.8 -1.1 Glyoxalase family protein compare
PP_4981 -0.8 -1.7 polyisoprene-binding protein, acidic stress response factor compare
PP_1598 -0.8 -2.4 regulatory intramembrane protein RIP zinc protease compare
PP_0116 -0.8 -3.2 putative lipoprotein compare
PP_2231 -0.7 -2.1 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4734 -0.7 -3.8 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_3098 -0.7 -0.9 conserved protein of unknown function compare
PP_4817 -0.7 -2.3 MaoC domain protein compare
PP_5202 -0.7 -1.8 putative cell division protein compare
PP_0905 -0.7 -1.7 conserved exported protein of unknown function compare
PP_4094 -0.7 -1.5 conserved protein of unknown function compare
PP_4489 -0.7 -5.2 sigma-54 dependent transcriptional regulator compare
PP_2096 -0.7 -4.1 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_1439 -0.7 -1.0 conserved exported protein of unknown function compare
PP_3105 -0.7 -1.0 conserved membrane protein of unknown function compare
PP_1513 -0.7 -2.0 Ribosomal RNA small subunit methyltransferase J compare


Specific Phenotypes

For 23 genes in this experiment