Experiment set40IT089 for Pseudomonas putida KT2440

Compare to:

P. putida PUT10 MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_1774 -7.1 -4.7 conserved exported protein of unknown function compare
PP_3627 -6.4 -6.4 conserved protein of unknown function compare
PP_1650 -6.3 -38.1 Sensor protein GacS compare
PP_4099 -6.3 -40.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1800 -5.7 -4.0 Oxidoreductase Rmd compare
PP_0434 -5.5 -5.4 Anhydro-N-acetylmuramic acid kinase compare
PP_4874 -5.5 -3.8 50S ribosomal protein L9 compare
PP_0789 -5.5 -6.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5279 -5.5 -3.8 conserved protein of unknown function compare
PP_0405 -5.5 -8.3 conserved protein of unknown function compare
PP_1355 -5.4 -9.7 Muropeptide permease AmpG compare
PP_1776 -5.4 -10.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4936 -5.2 -10.5 O-antigen polymerase compare
PP_1801 -5.2 -9.3 Glycosyl transferase WbpY compare
PP_1627 -4.9 -10.1 conserved protein of unknown function compare
PP_1803 -4.9 -11.3 UDP-sugar epimerase compare
PP_0540 -4.9 -10.0 conserved inner membrane protein compare
PP_1663 -4.9 -11.7 conserved exported protein of unknown function compare
PP_1802 -4.8 -17.0 glycosyl transferase compare
PP_2148 -4.7 -13.0 transcription-repair coupling factor compare
PP_1805 -4.7 -16.8 Polysaccharide biosynthesis protein compare
PP_5114 -4.7 -5.6 putative adenine methyltransferase compare
PP_4938 -4.7 -13.1 putative Glycosyl transferase compare
PP_1777 -4.6 -14.6 phosphomannomutase compare
PP_1799 -4.5 -12.7 GDP-mannose 4,6-dehydratase compare
PP_2145 -4.5 -3.1 beta-N-acetylglucosaminidase compare
PP_1780 -4.5 -15.4 putative mannosyltransferase compare
PP_1655 -4.4 -9.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1764 -4.3 -3.0 Phosphoglycolate phosphatase 2 compare
PP_1778 -4.2 -2.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0435 -4.0 -6.1 Peptidase, M23/M37 family compare
PP_0066 -4.0 -8.0 Ribosomal RNA small subunit methyltransferase B compare
PP_1871 -3.9 -6.0 Protease HtpX compare
PP_1804 -3.9 -10.8 Glycosyl transferase WbpL compare
PP_4726 -3.9 -3.8 Chaperone protein DnaJ compare
PP_0406 -3.9 -2.7 Nucleotidyltransferase family protein compare
PP_1779 -3.8 -3.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4902 -3.8 -2.6 Oligoribonuclease compare
PP_2030 -3.6 -6.2 conserved protein of unknown function compare
PP_0725 -3.6 -6.8 conserved hypothetical TPR repeat protein compare
PP_0948 -3.4 -2.3 Phosphocarrier protein HPr compare
PP_5145 -3.4 -19.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1036 -3.4 -11.9 membrane-bound lytic murein transglycosylase F compare
PP_4720 -3.3 -3.7 putative RNA binding protein compare
PP_1798 -3.3 -12.5 Outer membrane efflux protein compare
PP_0959 -3.3 -3.3 phospholipid ABC transporter compare
PP_5217 -3.2 -14.7 Polyphosphate kinase compare
PP_1075 -3.2 -11.6 glycerol kinase compare
PP_1702 -3.1 -4.3 Recombination-associated protein RdgC compare
PP_4098 -3.0 -4.1 UvrABC system protein C compare
PP_2031 -3.0 -3.1 conserved protein of unknown function compare
PP_5146 -2.9 -8.5 RNA pyrophosphohydrolase compare
PP_0937 -2.9 -5.9 endoribonuclease G (RNAse G) compare
PP_5283 -2.9 -5.4 periplasmic dipeptide transport protein compare
PP_1770 -2.8 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4171 -2.8 -13.3 conserved exported protein of unknown function compare
PP_1268 -2.7 -4.8 putative HtrA suppressor protein sohA compare
PP_2027 -2.5 -5.7 conserved exported protein of unknown function compare
PP_4895 -2.5 -1.7 tRNA dimethylallyltransferase compare
PP_5058 -2.5 -6.0 Carboxy-terminal-processing protease compare
PP_1789 -2.4 -6.0 Hydrolase, haloacid dehalogenase-like family compare
PP_2032 -2.4 -6.0 putative ATPase compare
PP_0164 -2.4 -4.9 conserved protein of unknown function compare
PP_0794 -2.3 -6.7 1-phosphofructokinase monomer compare
PP_1326 -2.3 -2.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1076 -2.3 -7.0 aquaglyceroporin compare
PP_2299 -2.3 -3.3 Trigger factor compare
PP_0127 -2.2 -3.5 Thiol:disulfide interchange protein compare
PP_1790 -2.2 -2.9 putative Acylneuraminate cytidylyltransferase compare
PP_4515 -2.1 -6.4 Transcriptional regulator, MarR family compare
PP_1237 -2.1 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4217 -2.1 -14.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2028 -2.1 -3.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0809 -1.9 -5.7 disulfide bond formation protein B compare
PP_2402 -1.9 -2.3 putative Sensor histidine kinase compare
PP_0719 -1.9 -2.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4517 -1.9 -2.0 conserved protein of unknown function compare
PP_1733 -1.8 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4798 -1.8 -7.4 putative Membrane-bound lytic murein transglycosylase compare
PP_1656 -1.8 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4471 -1.8 -3.8 Magnesium transporter compare
PP_1523 -1.8 -2.8 conserved protein of unknown function compare
PP_0960 -1.7 -4.8 phospholipid ABC transporter binding protein compare
PP_2414 -1.7 -1.3 conserved exported protein of unknown function compare
PP_0958 -1.7 -5.4 phospholipid ABC transporter ATP-binding subunit compare
PP_1204 -1.7 -4.6 putative Lipoprotein compare
PP_0961 -1.7 -5.9 toluene tolerance protein compare
PP_4199 -1.7 -1.2 putative Lipoprotein compare
PP_1918 -1.6 -9.1 septation protein compare
PP_2581 -1.6 -2.2 conserved protein of unknown function compare
PP_4198 -1.6 -5.6 OmpA family protein compare
PP_2029 -1.6 -1.6 von Willebrand factor type A domain protein compare
PP_t49 -1.5 -4.2 tRNA-Met compare
PP_0787 -1.5 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0653 -1.5 -1.8 conserved protein of unknown function compare
PP_5101 -1.5 -6.5 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_1626 -1.5 -4.8 DNA mismatch repair protein MutS compare
PP_1797 -1.5 -5.8 HlyD family secretion protein compare
PP_1216 -1.4 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1807 -1.4 -7.3 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_4009 -1.4 -3.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4805 -1.4 -6.7 membrane-bound lytic murein transglycosylase B compare
PP_0941 -1.3 -4.9 putative ribosome associated protein compare
PP_2005 -1.3 -5.0 conserved exported protein of unknown function compare
PP_3105 -1.3 -1.8 conserved membrane protein of unknown function compare
PP_1441 -1.3 -4.2 tRNA (cmo5U34)-methyltransferase compare
PP_5546 -1.3 -2.1 conserved protein of unknown function compare
PP_2163 -1.3 -5.1 VacJ lipoprotein compare
PP_5113 -1.3 -3.5 predicted Zn-dependent peptidases compare
PP_1493 -1.3 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4084 -1.3 -2.9 conserved protein of unknown function compare
PP_4495 -1.3 -9.1 aromatic amino acid transport protein compare
PP_0962 -1.3 -3.0 toluene-tolerance protein compare
PP_4971 -1.3 -6.8 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1654 -1.3 -1.6 cysteine synthase B compare
PP_5278 -1.3 -5.2 4-guanidinobutyraldehyde dehydrogenase compare
PP_4964 -1.3 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4701 -1.2 -1.0 glucose-6-phosphate isomerase compare
PP_0007 -1.2 -2.1 conserved hypothetical protein compare
PP_0512 -1.2 -2.4 hypothetical protein compare
PP_1215 -1.2 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_5284 -1.2 -2.9 UPF0758 protein PP_5284 compare
PP_0914 -1.2 -6.1 GGDEF domain protein compare
PP_1763 -1.2 -2.8 putative oxidoreductase compare
PP_4944 -1.2 -1.7 Carbamoyltransferase compare
PP_5439 -1.2 -3.8 conserved protein of unknown function compare
PP_0691 -1.2 -1.5 Glutamate 5-kinase compare
PP_4892 -1.1 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4006 -1.1 -5.1 Putative arginyl-tRNA--protein transferase compare
PP_4529 -1.1 -1.6 conserved protein of unknown function compare
PP_4264 -1.1 -4.1 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1813 -1.1 -3.2 ComEA-related protein compare
PP_1775 -1.1 -1.4 Metallo-beta-lactamase family protein compare
PP_1217 -1.1 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4941 -1.1 -2.6 conserved exported protein of unknown function compare
PP_2903 -1.1 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4766 -1.0 -4.8 ATP-dependent RNA helicase compare
PP_2098 -1.0 -5.1 D-alanyl-D-alanine carboxypeptidase compare
PP_1513 -1.0 -2.1 Ribosomal RNA small subunit methyltransferase J compare
PP_0872 -1.0 -4.1 Peptide chain release factor 3 compare
PP_5528 -1.0 -1.8 conserved protein of unknown function compare
PP_1309 -1.0 -4.1 conserved exported protein of unknown function compare
PP_4980 -1.0 -3.8 ATP-dependent RNA helicase compare
PP_3035 -1.0 -1.7 conserved protein of unknown function compare
PP_0035 -1.0 -1.5 putative bactoprenol-linked glycose transferase compare
PP_0218 -1.0 -5.4 Sensory box protein compare
PP_4891 -1.0 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0232 -1.0 -1.4 ATP-binding taurine transporter subunit compare
PP_1909 -1.0 -2.0 putative septum formation protein compare
PP_2568 -1.0 -1.3 Ring-cleaving dioxygenase compare
PP_2820 -0.9 -2.0 HTH-type transcriptional regulator nfxB compare
PP_1020 -0.9 -1.4 putative glucose-6-phosphate 1-epimerase compare
PP_2939 -0.9 -4.1 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_5143 -0.9 -1.6 conserved membrane protein of unknown function compare
PP_1428 -0.9 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_5100 -0.9 -2.9 dITP/XTP pyrophosphatase compare
PP_2880 -0.9 -1.4 Transcriptional regulator, TetR family compare
PP_5230 -0.9 -2.5 Tyrosine recombinase XerC compare
PP_0048 -0.9 -1.4 conserved protein of unknown function compare
PP_5086 -0.9 -3.9 putative nuclease (SNase domain protein) compare
PP_4172 -0.9 -3.2 conserved exported protein of unknown function compare
PP_2650 -0.9 -1.7 putative 4-hydroxybutyrate dehydrogenase compare
PP_2107 -0.9 -1.3 conserved protein of unknown function compare
PP_5678 -0.9 -2.5 protein of unknown function compare
PP_2499 -0.9 -1.5 conserved protein of unknown function compare
PP_4994 -0.9 -1.8 conserved protein of unknown function compare
PP_4570 -0.9 -5.6 conserved protein of unknown function compare
PP_2231 -0.9 -2.4 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3824 -0.9 -2.3 conserved exported protein of unknown function compare
PP_0839 -0.9 -2.0 tRNA Cm32/Um32 methyltransferase compare
PP_3034 -0.9 -2.6 putative Regulator protein compare
PP_5295 -0.9 -1.3 conserved protein of unknown function compare
PP_3768 -0.8 -2.9 putative shikimate 5-dehydrogenase compare
PP_2121 -0.8 -2.2 putative Lipoprotein compare
PP_5317 -0.8 -1.4 Probable chorismate pyruvate-lyase compare
PP_2403 -0.8 -1.3 Chemotaxis protein CheY compare
PP_2304 -0.8 -3.3 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5473 -0.8 -1.8 putative transcriptional regulator, LuxR family compare
PP_5253 -0.8 -2.6 Arylesterase compare
PP_2054 -0.8 -2.8 putative DNA-binding transcriptional regulator compare
PP_3409 -0.8 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_0069 -0.8 -3.2 putative Rossmann fold nucleotide-binding protein compare
PP_4132 -0.8 -2.7 conserved protein of unknown function compare
PP_1066 -0.8 -1.6 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4489 -0.8 -4.9 sigma-54 dependent transcriptional regulator compare
PP_4490 -0.8 -3.5 phenylalanine-4-hydroxylase compare
PP_2947 -0.8 -3.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2765 -0.7 -1.8 putative Sulfonate monooxygenase MsuD compare
PP_4879 -0.7 -3.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0841 -0.7 -2.8 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4911 -0.7 -4.1 conserved protein of unknown function compare
PP_0916 -0.7 -1.8 Amino acid transporter LysE compare
PP_1575 -0.7 -1.5 conserved protein of unknown function compare
PP_1468 -0.7 -1.1 Tyrosine recombinase XerD compare
PP_0042 -0.7 -2.0 conserved exported protein of unknown function compare
PP_3318 -0.7 -1.6 conserved protein of unknown function compare
PP_2361 -0.7 -2.5 putative chaperone protein compare
PP_2653 -0.7 -1.6 Transcriptional regulator, Cro/CI family compare
PP_1783 -0.7 -0.8 dTDP-glucose pyrophosphorylase compare
PP_3810 -0.7 -1.8 conserved protein of unknown function compare


Specific Phenotypes

For 26 genes in this experiment