Experiment set40IT088 for Pseudomonas putida KT2440

Compare to:

P. putida PUT10 MOI 1

200 most important genes:

  gene name fitness t score description  
PP_1774 -7.4 -4.5 conserved exported protein of unknown function compare
PP_3627 -7.0 -6.8 conserved protein of unknown function compare
PP_5114 -6.7 -4.6 putative adenine methyltransferase compare
PP_1627 -6.4 -9.8 conserved protein of unknown function compare
PP_1650 -6.3 -38.1 Sensor protein GacS compare
PP_4099 -6.1 -33.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0540 -6.1 -9.4 conserved inner membrane protein compare
PP_1355 -5.8 -8.9 Muropeptide permease AmpG compare
PP_0789 -5.8 -6.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0405 -5.7 -7.9 conserved protein of unknown function compare
PP_0066 -5.7 -11.6 Ribosomal RNA small subunit methyltransferase B compare
PP_1803 -5.6 -9.3 UDP-sugar epimerase compare
PP_2148 -5.4 -12.6 transcription-repair coupling factor compare
PP_4936 -5.3 -10.8 O-antigen polymerase compare
PP_1776 -5.3 -13.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1800 -5.2 -9.4 Oxidoreductase Rmd compare
PP_4726 -5.2 -3.6 Chaperone protein DnaJ compare
PP_0434 -5.1 -7.0 Anhydro-N-acetylmuramic acid kinase compare
PP_1801 -4.9 -11.8 Glycosyl transferase WbpY compare
PP_1799 -4.8 -13.5 GDP-mannose 4,6-dehydratase compare
PP_4938 -4.6 -13.1 putative Glycosyl transferase compare
PP_1805 -4.6 -20.6 Polysaccharide biosynthesis protein compare
PP_4874 -4.6 -4.2 50S ribosomal protein L9 compare
PP_1780 -4.6 -18.4 putative mannosyltransferase compare
PP_1764 -4.5 -3.1 Phosphoglycolate phosphatase 2 compare
PP_1778 -4.4 -3.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1663 -4.3 -12.4 conserved exported protein of unknown function compare
PP_1777 -4.3 -18.5 phosphomannomutase compare
PP_1655 -4.3 -13.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1802 -4.3 -17.6 glycosyl transferase compare
PP_0435 -4.2 -5.8 Peptidase, M23/M37 family compare
PP_2145 -4.1 -4.0 beta-N-acetylglucosaminidase compare
PP_0406 -4.1 -2.8 Nucleotidyltransferase family protein compare
PP_1804 -4.0 -10.0 Glycosyl transferase WbpL compare
PP_5279 -4.0 -5.8 conserved protein of unknown function compare
PP_1186 -3.7 -2.5 two component system DNA-binding transcriptional dual regulator compare
PP_5145 -3.7 -19.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0725 -3.7 -7.4 conserved hypothetical TPR repeat protein compare
PP_5058 -3.7 -6.6 Carboxy-terminal-processing protease compare
PP_1779 -3.5 -5.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2030 -3.3 -6.5 conserved protein of unknown function compare
PP_1215 -3.3 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_2029 -3.2 -3.0 von Willebrand factor type A domain protein compare
PP_2032 -3.2 -9.1 putative ATPase compare
PP_1770 -3.2 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5217 -3.2 -15.2 Polyphosphate kinase compare
PP_4199 -3.2 -1.6 putative Lipoprotein compare
PP_1075 -3.1 -10.5 glycerol kinase compare
PP_1036 -3.1 -11.6 membrane-bound lytic murein transglycosylase F compare
PP_1798 -3.0 -11.3 Outer membrane efflux protein compare
PP_4171 -3.0 -13.3 conserved exported protein of unknown function compare
PP_0960 -2.9 -6.4 phospholipid ABC transporter binding protein compare
PP_5283 -2.8 -5.4 periplasmic dipeptide transport protein compare
PP_1871 -2.7 -4.9 Protease HtpX compare
PP_0958 -2.7 -7.9 phospholipid ABC transporter ATP-binding subunit compare
PP_1204 -2.6 -5.9 putative Lipoprotein compare
PP_4217 -2.6 -18.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1076 -2.6 -7.7 aquaglyceroporin compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_4515 -2.5 -11.3 Transcriptional regulator, MarR family compare
PP_1326 -2.5 -3.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2028 -2.4 -4.9 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1702 -2.4 -4.9 Recombination-associated protein RdgC compare
PP_0961 -2.4 -7.1 toluene tolerance protein compare
PP_2299 -2.3 -3.8 Trigger factor compare
PP_1523 -2.2 -3.9 conserved protein of unknown function compare
PP_0794 -2.1 -4.1 1-phosphofructokinase monomer compare
PP_0719 -2.1 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1789 -2.1 -5.8 Hydrolase, haloacid dehalogenase-like family compare
PP_0937 -2.1 -4.4 endoribonuclease G (RNAse G) compare
PP_2027 -2.0 -7.0 conserved exported protein of unknown function compare
PP_1790 -2.0 -3.5 putative Acylneuraminate cytidylyltransferase compare
PP_5146 -1.9 -5.0 RNA pyrophosphohydrolase compare
PP_1656 -1.9 -6.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_2163 -1.9 -6.3 VacJ lipoprotein compare
PP_0872 -1.9 -5.4 Peptide chain release factor 3 compare
PP_0948 -1.8 -2.0 Phosphocarrier protein HPr compare
PP_4944 -1.8 -3.2 Carbamoyltransferase compare
PP_1918 -1.7 -9.9 septation protein compare
PP_0164 -1.7 -5.3 conserved protein of unknown function compare
PP_4798 -1.7 -9.2 putative Membrane-bound lytic murein transglycosylase compare
PP_4804 -1.7 -2.0 RlpA-like lipoprotein compare
PP_2031 -1.6 -2.7 conserved protein of unknown function compare
PP_5439 -1.6 -5.7 conserved protein of unknown function compare
PP_4720 -1.6 -2.3 putative RNA binding protein compare
PP_1441 -1.6 -6.9 tRNA (cmo5U34)-methyltransferase compare
PP_4980 -1.6 -5.3 ATP-dependent RNA helicase compare
PP_5101 -1.5 -7.3 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_5533 -1.5 -1.9 conserved protein of unknown function compare
PP_t49 -1.5 -3.0 tRNA-Met compare
PP_0127 -1.5 -2.7 Thiol:disulfide interchange protein compare
PP_0809 -1.5 -5.9 disulfide bond formation protein B compare
PP_1626 -1.4 -4.9 DNA mismatch repair protein MutS compare
PP_4198 -1.4 -4.9 OmpA family protein compare
PP_0941 -1.4 -3.6 putative ribosome associated protein compare
PP_1909 -1.4 -2.2 putative septum formation protein compare
PP_4971 -1.3 -7.2 putative Outer membrane-bound lytic murein transglycolase A compare
PP_0691 -1.3 -1.6 Glutamate 5-kinase compare
PP_4490 -1.3 -6.4 phenylalanine-4-hydroxylase compare
PP_4066 -1.3 -2.8 methylglutaconyl-CoA hydratase compare
PP_5505 -1.3 -1.9 conserved transmembrane protein of unknown function compare
PP_1783 -1.3 -1.2 dTDP-glucose pyrophosphorylase compare
PP_4805 -1.2 -6.3 membrane-bound lytic murein transglycosylase B compare
PP_4495 -1.2 -8.7 aromatic amino acid transport protein compare
PP_4964 -1.2 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4892 -1.2 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0962 -1.2 -2.7 toluene-tolerance protein compare
PP_1797 -1.2 -4.1 HlyD family secretion protein compare
PP_1279 -1.2 -3.9 Probable alginate O-acetylase AlgJ compare
PP_4529 -1.2 -1.4 conserved protein of unknown function compare
PP_1807 -1.2 -5.4 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_1309 -1.2 -4.8 conserved exported protein of unknown function compare
PP_0959 -1.1 -2.0 phospholipid ABC transporter compare
PP_5113 -1.1 -4.0 predicted Zn-dependent peptidases compare
PP_5317 -1.1 -1.4 Probable chorismate pyruvate-lyase compare
PP_5706 -1.1 -2.1 Sec translocation complex - SecG subunit compare
PP_2005 -1.1 -5.2 conserved exported protein of unknown function compare
PP_5284 -1.1 -3.3 UPF0758 protein PP_5284 compare
PP_2098 -1.1 -7.0 D-alanyl-D-alanine carboxypeptidase compare
PP_3052 -1.1 -1.3 conserved protein of unknown function compare
PP_4570 -1.1 -7.2 conserved protein of unknown function compare
PP_4994 -1.1 -2.2 conserved protein of unknown function compare
PP_0855 -1.1 -2.3 conserved protein of unknown function compare
PP_1513 -1.1 -1.8 Ribosomal RNA small subunit methyltransferase J compare
PP_5278 -1.1 -3.3 4-guanidinobutyraldehyde dehydrogenase compare
PP_5053 -1.1 -4.4 Protein-export protein SecB compare
PP_0035 -1.0 -2.6 putative bactoprenol-linked glycose transferase compare
PP_3398 -1.0 -1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1898 -1.0 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4891 -1.0 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5270 -1.0 -5.3 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1775 -1.0 -1.4 Metallo-beta-lactamase family protein compare
PP_2441 -1.0 -1.6 conserved protein of unknown function compare
PP_3110 -1.0 -2.1 protein of unknown function compare
PP_4172 -1.0 -3.9 conserved exported protein of unknown function compare
PP_3738 -1.0 -2.3 putative Transcriptional regulator VanR compare
PP_4471 -1.0 -2.2 Magnesium transporter compare
PP_4875 -1.0 -1.2 conserved membrane protein of unknown function compare
PP_4489 -0.9 -6.2 sigma-54 dependent transcriptional regulator compare
PP_2903 -0.9 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1268 -0.9 -1.5 putative HtrA suppressor protein sohA compare
PP_5423 -0.9 -1.4 conserved membrane protein of unknown function compare
PP_0787 -0.9 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0914 -0.9 -5.6 GGDEF domain protein compare
PP_4143 -0.9 -2.1 conserved protein of unknown function compare
PP_2847 -0.9 -1.4 Urease accessory protein UreJ compare
PP_3768 -0.9 -3.9 putative shikimate 5-dehydrogenase compare
PP_3447 -0.9 -1.3 conserved membrane protein of unknown function compare
PP_4006 -0.9 -4.4 Putative arginyl-tRNA--protein transferase compare
PP_0042 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4098 -0.8 -1.7 UvrABC system protein C compare
PP_4424 -0.8 -2.1 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3035 -0.8 -1.9 conserved protein of unknown function compare
PP_2370 -0.8 -1.6 conserved protein of unknown function compare
PP_5202 -0.8 -1.2 putative cell division protein compare
PP_3769 -0.8 -2.4 conserved exported protein of unknown function compare
PP_1428 -0.8 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_0566 -0.8 -1.2 translation-related factor compare
PP_3898 -0.8 -2.3 conserved protein of unknown function compare
PP_4132 -0.8 -2.9 conserved protein of unknown function compare
PP_5055 -0.8 -3.0 Sulfurtransferase compare
PP_1571 -0.8 -2.3 conserved protein of unknown function compare
PP_3946 -0.8 -0.8 HTH-type transcriptional repressor NicR compare
PP_4952 -0.8 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4370 -0.8 -3.1 Flagellar hook-basal body complex protein FliE compare
PP_0593 -0.8 -0.9 putative ribosome-binding factor compare
PP_1237 -0.8 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0007 -0.8 -1.3 conserved hypothetical protein compare
PP_4766 -0.8 -3.6 ATP-dependent RNA helicase compare
PP_5100 -0.8 -2.1 dITP/XTP pyrophosphatase compare
PP_0839 -0.8 -1.6 tRNA Cm32/Um32 methyltransferase compare
PP_5SB -0.7 -2.3 5S ribosomal RNA compare
PP_1734 -0.7 -1.4 Probable septum site-determining protein MinC compare
PP_0260 -0.7 -3.5 ADP-sugar pyrophosphorylase compare
PP_5528 -0.7 -1.4 conserved protein of unknown function compare
PP_4697 -0.7 -2.1 poly(A) polymerase compare
PP_3409 -0.7 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_3694 -0.7 -4.4 conserved protein of unknown function compare
PP_4009 -0.7 -1.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_3179 -0.7 -3.2 Transcriptional regulator, LysR family compare
PP_1468 -0.7 -1.3 Tyrosine recombinase XerD compare
PP_2402 -0.7 -1.1 putative Sensor histidine kinase compare
PP_0564 -0.7 -4.1 conserved protein of unknown function compare
PP_2414 -0.7 -0.8 conserved exported protein of unknown function compare
PP_2340 -0.7 -1.8 conserved protein of unknown function compare
PP_4223 -0.7 -1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2096 -0.7 -3.9 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_0245 -0.7 -3.9 putative transcriptional accessory protein compare
PP_3460 -0.7 -2.0 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1138 -0.7 -2.3 branched chain amino acid transporter - ATP binding subunit compare
PP_5073 -0.7 -1.4 conserved exported protein of unknown function compare
PP_0401 -0.7 -1.3 Ribosomal RNA small subunit methyltransferase A compare
PP_0928 -0.7 -4.6 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_0236 -0.7 -2.2 NAD(P)H-dependent FMN reductase subunit compare
PP_2231 -0.7 -2.1 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1493 -0.7 -1.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2313 -0.7 -0.9 conserved membrane protein of unknown function compare
PP_5227 -0.7 -3.3 diaminopimelate decarboxylase compare
PP_4999 -0.7 -0.4 dihydroorotase-like protein compare
PP_4997 -0.7 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare


Specific Phenotypes

For 30 genes in this experiment