| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +3.3 | 8.2 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +2.8 | 22.9 | glycine dehydrogenase (NCBI) | compare |
| b2905 | gcvT | +2.0 | 7.5 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b4592 | yccB | +1.8 | 3.0 | hypothetical protein (RefSeq) | compare |
| b1506 | yneL | +1.8 | 2.9 | predicted transcriptional regulator (NCBI) | compare |
| b0627 | tatE | +1.5 | 3.3 | twin arginine translocase protein E (NCBI) | compare |
| b2650 | ypjC | +1.5 | 0.6 | hypothetical protein (RefSeq) | compare |
| b1362 | rzpR | +1.5 | 2.1 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1108 | ycfP | +1.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4505 | insX | +1.4 | 1.5 | predicted IS protein (RefSeq) | compare |
| b3107 | yhaL | +1.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1332 | ynaJ | +1.4 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b3443 | yrhA | +1.4 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3181 | greA | +1.4 | 7.3 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b0688 | pgm | +1.4 | 3.2 | phosphoglucomutase (NCBI) | compare |
| b1594 | dgsA | +1.3 | 4.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2168 | fruK | +1.3 | 1.4 | 1-phosphofructokinase (NCBI) | compare |
| b4701 | sokX | +1.3 | 0.6 | sok-related sRNA, function unknown (RefSeq) | compare |
| b4699 | fnrS | +1.3 | 1.2 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1361 | ydaW | +1.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1583 | ynfB | +1.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b1486 | ddpB | +1.2 | 2.8 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b4594 | ymgJ | +1.2 | 1.7 | hypothetical protein (RefSeq) | compare |
| b2948 | yqgE | +1.1 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b2490 | b2490 | +1.1 | 2.0 | putative protein processing element (VIMSS) | compare |
| b4203 | rplI | +1.1 | 4.5 | 50S ribosomal protein L9 (NCBI) | compare |
| b4655 | ythA | +1.1 | 1.4 | expressed protein (RefSeq) | compare |
| b4568 | ytjA | +1.1 | 2.0 | predicted protein (RefSeq) | compare |
| b3163 | nlpI | +1.1 | 3.4 | hypothetical protein (NCBI) | compare |
| b0310 | ykgH | +1.1 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b4458 | oxyS | +1.1 | 1.2 | global regulatory RNA (NCBI) | compare |
| b4402 | yjjY | +1.1 | 0.6 | hypothetical protein (NCBI) | compare |
| b4653 | yicT | +1.1 | 2.4 | no description | compare |
| b2808 | gcvA | +1.1 | 3.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1660 | ydhC | +1.1 | 2.9 | predicted transporter (NCBI) | compare |
| b1271 | yciK | +1.1 | 2.1 | short chain dehydrogenase (NCBI) | compare |
| b1190 | dadX | +1.1 | 3.3 | alanine racemase (NCBI) | compare |
| b2012 | yeeD | +1.1 | 3.2 | hypothetical protein (NCBI) | compare |
| b1556 | b1556 | +1.1 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2947 | gshB | +1.1 | 3.2 | glutathione synthetase (NCBI) | compare |
| b4104 | phnE | +1.0 | 2.4 | phosphonate/organophosphate ester transporter subunit (NCBI) | compare |
| b4144 | yjeI | +1.0 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3199 | yrbK | +1.0 | 1.4 | hypothetical protein (NCBI) | compare |
| b2765 | ygcM | +1.0 | 2.4 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b1418 | cybB | +1.0 | 2.0 | cytochrome b(561) (VIMSS) | compare |
| b4631 | ykgQ | +1.0 | 1.5 | no description | compare |
| b1814 | sdaA | +1.0 | 2.1 | L-serine deaminase I (NCBI) | compare |
| b2823 | ppdC | +1.0 | 2.5 | hypothetical protein (NCBI) | compare |
| b0802 | ybiJ | +1.0 | 2.0 | hypothetical protein (NCBI) | compare |
| b3836 | b3836 | +1.0 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4630 | ykgP | +1.0 | 2.3 | no description | compare |
| b2634 | yfjR | +1.0 | 2.1 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1360 | ydaV | +1.0 | 1.3 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b1434 | ydcN | +0.9 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1575 | dicB | +0.9 | 0.8 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b2058 | wcaB | +0.9 | 1.0 | predicted acyl transferase (NCBI) | compare |
| b1454 | yncG | +0.9 | 2.4 | predicted enzyme (NCBI) | compare |
| b0605 | ahpC | +0.9 | 2.9 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b1830 | prc | +0.9 | 3.8 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3630 | rfaP | +0.9 | 5.9 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1095 | fabF | +0.9 | 4.8 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b0504 | ybbS | +0.9 | 2.4 | DNA-binding transcriptional activator of the allD operon (NCBI) | compare |
| b1085 | b1085 | +0.9 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1861 | ruvA | +0.9 | 1.0 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b0247 | ykfG | +0.9 | 1.0 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4373 | rimI | +0.9 | 2.0 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b2742 | nlpD | +0.9 | 4.2 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3889 | yiiE | +0.9 | 2.3 | predicted transcriptional regulator (RefSeq) | compare |
| b0707 | ybgA | +0.8 | 1.9 | hypothetical protein (NCBI) | compare |
| b1465 | narV | +0.8 | 1.9 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b3194 | yrbE | +0.8 | 4.5 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1217 | chaB | +0.8 | 1.4 | cation transport regulator (NCBI) | compare |
| b4694 | yagP | +0.8 | 1.6 | no description | compare |
| b4045 | yjbJ | +0.8 | 1.3 | predicted stress response protein (NCBI) | compare |
| b2829 | ptsP | +0.8 | 5.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1618 | uidR | +0.8 | 1.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1853 | yebK | +0.8 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3150 | yraP | +0.8 | 3.1 | hypothetical protein (NCBI) | compare |
| b1518 | lsrG | +0.8 | 0.6 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1186 | nhaB | +0.8 | 3.8 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b0051 | ksgA | +0.8 | 2.5 | dimethyladenosine transferase (NCBI) | compare |
| b1380 | ldhA | +0.8 | 1.4 | D-lactate dehydrogenase (NCBI) | compare |
| b2209 | eco | +0.8 | 1.2 | ecotin precursor (NCBI) | compare |
| b1685 | ydiH | +0.8 | 1.1 | predicted protein (RefSeq) | compare |
| b0729 | sucD | +0.8 | 2.0 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b3973 | birA | +0.8 | 1.1 | biotin--protein ligase (NCBI) | compare |
| b1341 | b1341 | +0.8 | 3.6 | orf, hypothetical protein (VIMSS) | compare |
| b3842 | rfaH | +0.8 | 2.6 | transcriptional activator RfaH (NCBI) | compare |
| b2141 | yohJ | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b1106 | ycfN | +0.8 | 1.8 | thiamin kinase (NCBI) | compare |
| b3755 | yieP | +0.8 | 3.1 | predicted transcriptional regulator (NCBI) | compare |
| b0218 | yafU | +0.7 | 1.6 | predicted inner membrane protein (RefSeq) | compare |
| b0857 | potI | +0.7 | 1.7 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2688 | gshA | +0.7 | 3.1 | glutamate--cysteine ligase (NCBI) | compare |
| b1179 | ycgL | +0.7 | 1.5 | conserved protein (NCBI) | compare |
| b3999 | yjaG | +0.7 | 1.9 | hypothetical protein (NCBI) | compare |
| b0059 | hepA | +0.7 | 5.3 | ATP-dependent helicase HepA (NCBI) | compare |
| b4595 | yciY | +0.7 | 1.2 | hypothetical protein (RefSeq) | compare |
| b2110 | yehC | +0.7 | 1.2 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3934 | cytR | +0.7 | 5.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3753 | rbsR | +0.7 | 4.6 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b0927 | ycbL | +0.7 | 2.0 | predicted metal-binding enzyme (NCBI) | compare |
| b4148 | sugE | +0.7 | 2.1 | suppresses groEL, may be chaperone (VIMSS) | compare |
| b2259 | pmrD | +0.7 | 0.7 | polymyxin resistance protein B (VIMSS) | compare |
| b3083 | ygjN | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b4100 | phnH | +0.7 | 1.3 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1630 | rsxD | +0.7 | 2.1 | electron transport complex protein RnfD (NCBI) | compare |
| b1778 | yeaA | +0.7 | 1.2 | methionine sulfoxide reductase B (NCBI) | compare |
| b4017 | arpA | +0.7 | 3.1 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b4702 | mgtL | +0.7 | 0.7 | regulatory leader peptide for mgtA (NCBI) | compare |
| b1426 | ydcH | +0.7 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4646 | yrdE | +0.7 | 1.8 | no description | compare |
| b2262 | menB | +0.7 | 1.5 | naphthoate synthase (NCBI) | compare |
| b1514 | lsrC | +0.7 | 1.3 | AI2 transporter (NCBI) | compare |
| b3198 | kdsC | +0.7 | 1.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2301 | yfcF | +0.7 | 2.2 | predicted enzyme (NCBI) | compare |
| b0728 | sucC | +0.7 | 2.9 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b1348 | lar | +0.7 | 0.9 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4232 | fbp | +0.7 | 4.0 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b2804 | fucU | +0.7 | 1.2 | L-fucose mutarotase (NCBI) | compare |
| b1754 | b1754 | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3631 | rfaG | +0.7 | 4.9 | glucosyltransferase I (NCBI) | compare |
| b3034 | nudF | +0.7 | 2.4 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b2127 | mlrA | +0.7 | 2.2 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2052 | fcl | +0.7 | 2.2 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b1918 | yecS | +0.7 | 1.2 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2426 | ucpA | +0.7 | 1.2 | putative oxidoreductase (VIMSS) | compare |
| b1943 | fliK | +0.7 | 2.0 | flagellar hook-length control protein (NCBI) | compare |
| b3203 | yhbH | +0.6 | 1.3 | predicted ribosome-associated, sigma 54 modulation protein (NCBI) | compare |
| b2817 | b2817 | +0.6 | 2.9 | putative amidase (VIMSS) | compare |
| b1749 | xthA | +0.6 | 1.5 | exonuclease III (NCBI) | compare |
| b1191 | b1191 | +0.6 | 3.6 | orf, hypothetical protein (VIMSS) | compare |
| b3404 | envZ | +0.6 | 3.1 | osmolarity sensor protein (NCBI) | compare |
| b1651 | gloA | +0.6 | 1.9 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b4025 | pgi | +0.6 | 3.0 | glucose-6-phosphate isomerase (NCBI) | compare |
| b2727 | hypB | +0.6 | 1.3 | GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) | compare |
| b3590 | selB | +0.6 | 4.1 | selenocysteinyl-tRNA-specific translation factor (NCBI) | compare |
| b3929 | rraA | +0.6 | 3.0 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b3366 | nirD | +0.6 | 1.7 | nitrite reductase small subunit (NCBI) | compare |
| b3432 | glgB | +0.6 | 4.4 | glycogen branching enzyme (NCBI) | compare |
| b3082 | ygjM | +0.6 | 0.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0550 | rusA | +0.6 | 0.7 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b0828 | iaaA | +0.6 | 1.3 | L-asparaginase (NCBI) | compare |
| b0696 | kdpC | +0.6 | 1.2 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b2576 | srmB | +0.6 | 1.1 | ATP-dependent RNA helicase (NCBI) | compare |
| b1936 | intG | +0.6 | 0.5 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2123 | yehR | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0864 | artP | +0.6 | 1.3 | arginine transporter subunit (NCBI) | compare |
| b1013 | ycdC | +0.6 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1707 | ydiV | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b4260 | pepA | +0.6 | 3.3 | leucyl aminopeptidase (NCBI) | compare |
| b1615 | uidC | +0.6 | 1.8 | membrane-associated protein (VIMSS) | compare |
| b2328 | mepA | +0.6 | 3.1 | penicillin-insensitive murein endopeptidase (NCBI) | compare |
| b1423 | ydcJ | +0.6 | 1.1 | hypothetical protein (NCBI) | compare |
| b2537 | hcaR | +0.6 | 2.0 | DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism (NCBI) | compare |
| b2187 | yejL | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b0065 | yabI | +0.6 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b2111 | yehD | +0.6 | 1.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1591 | b1591 | +0.6 | 1.1 | putative oxidoreductase component (VIMSS) | compare |
| b3632 | rfaQ | +0.6 | 4.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0865 | ybjP | +0.6 | 1.9 | predicted lipoprotein (NCBI) | compare |
| b2539 | hcaF | +0.6 | 1.4 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b1205 | ychH | +0.6 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b2221 | atoD | +0.6 | 1.0 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b4195 | ulaC | +0.6 | 1.3 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b2170 | setB | +0.6 | 1.9 | lactose/glucose efflux system (NCBI) | compare |
| b0920 | ycbC | +0.6 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b1153 | ymfQ | +0.6 | 1.0 | e14 prophage; conserved protein (NCBI) | compare |
| b2946 | yggJ | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2951 | yggS | +0.6 | 1.4 | predicted enzyme (NCBI) | compare |
| b3494 | yhiO | +0.6 | 2.4 | universal stress protein UspB (NCBI) | compare |
| b1582 | ynfA | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b0597 | ybdB | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b0773 | ybhB | +0.6 | 2.9 | predicted kinase inhibitor (NCBI) | compare |
| b3644 | yicC | +0.6 | 2.4 | hypothetical protein (NCBI) | compare |
| b2811 | ygdK | +0.6 | 1.9 | predicted Fe-S metabolism protein (NCBI) | compare |
| b1884 | cheR | +0.5 | 2.1 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b1155 | ymfS | +0.5 | 1.6 | e14 prophage; predicted protein (NCBI) | compare |
| b2317 | dedA | +0.5 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b0269 | yagF | +0.5 | 2.8 | CP4-6 prophage; predicted dehydratase (NCBI) | compare |
| b0329 | yahO | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b0995 | torR | +0.5 | 1.9 | DNA-binding response regulator in two-component regulatory system with TorS (NCBI) | compare |
| b2327 | yfcA | +0.5 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b0424 | thiJ | +0.5 | 1.8 | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (VIMSS) | compare |
| b2541 | hcaB | +0.5 | 2.3 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase (NCBI) | compare |
| b1519 | tam | +0.5 | 1.4 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b1755 | ynjC | +0.5 | 1.4 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b1156 | tfaE | +0.5 | 1.8 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b2288 | nuoA | +0.5 | 0.8 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0753 | ybgS | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1812 | pabB | +0.5 | 1.7 | para-aminobenzoate synthase component I (NCBI) | compare |
| b2668 | ygaP | +0.5 | 2.2 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b1636 | pdxY | +0.5 | 1.4 | pyridoxine kinase (NCBI) | compare |
| b2064 | asmA | +0.5 | 2.4 | predicted assembly protein (NCBI) | compare |
| b3577 | yiaM | +0.5 | 2.3 | predicted transporter (NCBI) | compare |
| b1824 | yobF | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b4457 | csrC | +0.5 | 0.8 | regulatory RNA (NCBI) | compare |
| b1344 | ydaO | +0.5 | 0.9 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2684 | mprA | +0.5 | 0.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1920 | fliY | +0.5 | 0.7 | cystine transporter subunit (NCBI) | compare |