Experiment set40IT087 for Pseudomonas putida KT2440

Compare to:

P. putida PUT10 MOI 1

200 most important genes:

  gene name fitness t score description  
PP_1774 -7.1 -4.5 conserved exported protein of unknown function compare
PP_0789 -6.5 -4.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0540 -5.8 -8.9 conserved inner membrane protein compare
PP_0434 -5.8 -4.0 Anhydro-N-acetylmuramic acid kinase compare
PP_1650 -5.8 -29.0 Sensor protein GacS compare
PP_4099 -5.7 -29.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1355 -5.6 -8.5 Muropeptide permease AmpG compare
PP_3627 -5.6 -6.2 conserved protein of unknown function compare
PP_0405 -5.6 -6.6 conserved protein of unknown function compare
PP_1627 -5.5 -11.2 conserved protein of unknown function compare
PP_5114 -5.4 -4.8 putative adenine methyltransferase compare
PP_2148 -5.4 -11.5 transcription-repair coupling factor compare
PP_1800 -5.3 -7.3 Oxidoreductase Rmd compare
PP_1655 -5.3 -10.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4720 -5.1 -3.6 putative RNA binding protein compare
PP_0066 -5.1 -9.5 Ribosomal RNA small subunit methyltransferase B compare
PP_4726 -4.9 -3.4 Chaperone protein DnaJ compare
PP_1803 -4.9 -11.4 UDP-sugar epimerase compare
PP_1802 -4.9 -19.4 glycosyl transferase compare
PP_4938 -4.9 -12.9 putative Glycosyl transferase compare
PP_1777 -4.9 -12.9 phosphomannomutase compare
PP_1776 -4.8 -13.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4936 -4.8 -11.1 O-antigen polymerase compare
PP_5279 -4.8 -5.7 conserved protein of unknown function compare
PP_1801 -4.8 -11.0 Glycosyl transferase WbpY compare
PP_1799 -4.6 -12.7 GDP-mannose 4,6-dehydratase compare
PP_1805 -4.6 -18.2 Polysaccharide biosynthesis protein compare
PP_1780 -4.6 -15.2 putative mannosyltransferase compare
PP_2145 -4.5 -3.1 beta-N-acetylglucosaminidase compare
PP_1804 -4.4 -9.8 Glycosyl transferase WbpL compare
PP_5058 -4.4 -4.3 Carboxy-terminal-processing protease compare
PP_1779 -4.3 -3.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1764 -4.3 -3.0 Phosphoglycolate phosphatase 2 compare
PP_0435 -4.1 -4.9 Peptidase, M23/M37 family compare
PP_1778 -4.0 -3.9 Lipopolysaccharide ABC export system, permease protein compare
PP_1663 -3.9 -7.8 conserved exported protein of unknown function compare
PP_1702 -3.8 -2.6 Recombination-associated protein RdgC compare
PP_1204 -3.8 -5.8 putative Lipoprotein compare
PP_0725 -3.7 -6.5 conserved hypothetical TPR repeat protein compare
PP_2027 -3.6 -6.3 conserved exported protein of unknown function compare
PP_0948 -3.4 -2.2 Phosphocarrier protein HPr compare
PP_4874 -3.3 -3.2 50S ribosomal protein L9 compare
PP_5145 -3.3 -18.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1798 -3.2 -12.3 Outer membrane efflux protein compare
PP_2030 -3.2 -5.8 conserved protein of unknown function compare
PP_0406 -3.1 -3.7 Nucleotidyltransferase family protein compare
PP_1075 -3.1 -11.1 glycerol kinase compare
PP_1036 -3.0 -10.2 membrane-bound lytic murein transglycosylase F compare
PP_5217 -3.0 -13.9 Polyphosphate kinase compare
PP_4171 -3.0 -13.8 conserved exported protein of unknown function compare
PP_2299 -2.9 -4.4 Trigger factor compare
PP_0937 -2.9 -5.6 endoribonuclease G (RNAse G) compare
PP_1523 -2.9 -4.2 conserved protein of unknown function compare
PP_4217 -2.8 -18.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5283 -2.7 -5.5 periplasmic dipeptide transport protein compare
PP_1871 -2.6 -5.9 Protease HtpX compare
PP_2029 -2.5 -2.8 von Willebrand factor type A domain protein compare
PP_4895 -2.4 -1.7 tRNA dimethylallyltransferase compare
PP_0809 -2.4 -8.3 disulfide bond formation protein B compare
PP_5146 -2.4 -6.2 RNA pyrophosphohydrolase compare
PP_1770 -2.4 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_t49 -2.4 -4.7 tRNA-Met compare
PP_0960 -2.3 -6.0 phospholipid ABC transporter binding protein compare
PP_2028 -2.3 -4.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5706 -2.3 -3.1 Sec translocation complex - SecG subunit compare
PP_1076 -2.3 -6.1 aquaglyceroporin compare
PP_2032 -2.2 -5.1 putative ATPase compare
PP_1428 -2.2 -3.0 Sigma factor AlgU negative regulatory protein compare
PP_1326 -2.2 -1.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4902 -2.1 -3.0 Oligoribonuclease compare
PP_4891 -2.0 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1789 -1.9 -5.1 Hydrolase, haloacid dehalogenase-like family compare
PP_2402 -1.9 -2.3 putative Sensor histidine kinase compare
PP_0127 -1.9 -3.3 Thiol:disulfide interchange protein compare
PP_1790 -1.9 -2.0 putative Acylneuraminate cytidylyltransferase compare
PP_0164 -1.9 -4.6 conserved protein of unknown function compare
PP_4892 -1.8 -5.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4515 -1.8 -4.5 Transcriptional regulator, MarR family compare
PP_5039 -1.8 -2.9 conserved protein of unknown function compare
PP_0958 -1.8 -5.5 phospholipid ABC transporter ATP-binding subunit compare
PP_1918 -1.7 -7.9 septation protein compare
PP_0401 -1.7 -4.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1217 -1.7 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4971 -1.7 -8.6 putative Outer membrane-bound lytic murein transglycolase A compare
PP_0775 -1.7 -2.6 conserved protein of unknown function compare
PP_2972 -1.6 -2.2 conserved protein of unknown function compare
PP_5439 -1.6 -4.0 conserved protein of unknown function compare
PP_1797 -1.6 -5.5 HlyD family secretion protein compare
PP_5101 -1.6 -6.4 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_0961 -1.6 -5.1 toluene tolerance protein compare
PP_1293 -1.5 -1.8 molybdopterin synthase small subunit compare
PP_1898 -1.5 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4964 -1.5 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_3447 -1.5 -1.8 conserved membrane protein of unknown function compare
PP_4798 -1.4 -6.9 putative Membrane-bound lytic murein transglycosylase compare
PP_1186 -1.4 -1.7 two component system DNA-binding transcriptional dual regulator compare
PP_2031 -1.4 -1.8 conserved protein of unknown function compare
PP_2163 -1.4 -5.2 VacJ lipoprotein compare
PP_4980 -1.4 -5.1 ATP-dependent RNA helicase compare
PP_4944 -1.4 -1.9 Carbamoyltransferase compare
PP_1656 -1.4 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_4495 -1.4 -9.1 aromatic amino acid transport protein compare
PP_0962 -1.4 -1.7 toluene-tolerance protein compare
PP_1654 -1.3 -1.5 cysteine synthase B compare
PP_4804 -1.3 -1.8 RlpA-like lipoprotein compare
PP_0959 -1.3 -1.9 phospholipid ABC transporter compare
PP_0794 -1.3 -3.5 1-phosphofructokinase monomer compare
PP_3411 -1.3 -1.9 conserved protein of unknown function compare
PP_4952 -1.3 -1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0941 -1.3 -4.5 putative ribosome associated protein compare
PP_4198 -1.3 -3.7 OmpA family protein compare
PP_1697 -1.3 -3.4 transcriptional regulator, GntR family compare
PP_4471 -1.3 -3.2 Magnesium transporter compare
PP_1216 -1.2 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2313 -1.2 -2.0 conserved membrane protein of unknown function compare
PP_0719 -1.2 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1626 -1.2 -4.6 DNA mismatch repair protein MutS compare
PP_3365 -1.2 -1.5 Acetolactate synthase compare
PP_5143 -1.2 -3.7 conserved membrane protein of unknown function compare
PP_5113 -1.2 -3.4 predicted Zn-dependent peptidases compare
PP_2147 -1.2 -3.2 conserved exported protein of unknown function compare
PP_3241 -1.2 -1.3 conserved exported protein of unknown function compare
PP_1739 -1.1 -2.3 conserved membrane protein of unknown function compare
PP_4805 -1.1 -6.0 membrane-bound lytic murein transglycosylase B compare
PP_1513 -1.1 -2.2 Ribosomal RNA small subunit methyltransferase J compare
PP_5270 -1.1 -3.8 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5278 -1.1 -4.2 4-guanidinobutyraldehyde dehydrogenase compare
PP_1309 -1.1 -5.5 conserved exported protein of unknown function compare
PP_3179 -1.1 -4.3 Transcriptional regulator, LysR family compare
PP_1279 -1.1 -3.4 Probable alginate O-acetylase AlgJ compare
PP_2898 -1.1 -2.3 conserved exported protein of unknown function compare
PP_1632 -1.1 -1.5 conserved protein of unknown function compare
PP_2098 -1.1 -6.5 D-alanyl-D-alanine carboxypeptidase compare
PP_3614 -1.1 -3.3 conserved membrane protein of unknown function compare
PP_3460 -1.1 -2.9 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2903 -1.1 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1807 -1.0 -5.3 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_4355 -1.0 -2.0 flagellar export apparatus subunit compare
PP_4529 -1.0 -1.7 conserved protein of unknown function compare
PP_0218 -1.0 -4.2 Sensory box protein compare
PP_0872 -1.0 -3.5 Peptide chain release factor 3 compare
PP_0564 -1.0 -4.4 conserved protein of unknown function compare
PP_5100 -1.0 -1.6 dITP/XTP pyrophosphatase compare
PP_4006 -1.0 -4.5 Putative arginyl-tRNA--protein transferase compare
PP_3449 -1.0 -1.3 conserved exported protein of unknown function compare
PP_4143 -1.0 -2.6 conserved protein of unknown function compare
PP_4008 -0.9 -3.0 ATP-dependent serine protease compare
PP_5735 -0.9 -1.9 conserved hypothetical protein compare
PP_1912 -0.9 -2.4 Phosphate acyltransferase compare
PP_2880 -0.9 -2.6 Transcriptional regulator, TetR family compare
PP_0914 -0.9 -5.2 GGDEF domain protein compare
PP_5423 -0.9 -2.4 conserved membrane protein of unknown function compare
PP_4734 -0.9 -3.6 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_2740 -0.9 -1.8 Transcriptional regulator, MerR family compare
PP_2345 -0.9 -2.5 conserved exported protein of unknown function compare
PP_4982 -0.9 -4.3 putative cytochrome b561, iron-regulated compare
PP_5272 -0.9 -3.4 conserved protein of unknown function compare
PP_5580 -0.9 -1.7 protein of unknown function compare
PP_1909 -0.9 -1.9 putative septum formation protein compare
PP_4340 -0.9 -1.8 response regulator for chemotactic signal transduction compare
PP_1048 -0.9 -2.2 putative protein secretion protein for export compare
PP_5053 -0.9 -4.2 Protein-export protein SecB compare
PP_1381 -0.9 -1.0 4-carboxymuconolactone decarboxylase compare
PP_4490 -0.9 -4.4 phenylalanine-4-hydroxylase compare
PP_3307 -0.9 -2.0 conserved protein of unknown function compare
PP_4356 -0.9 -1.9 Flagellar protein FliO compare
PP_2414 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4570 -0.9 -5.3 conserved protein of unknown function compare
PP_0787 -0.8 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0116 -0.8 -4.4 putative lipoprotein compare
PP_1441 -0.8 -3.4 tRNA (cmo5U34)-methyltransferase compare
PP_1598 -0.8 -2.2 regulatory intramembrane protein RIP zinc protease compare
PP_2132 -0.8 -3.4 Universal stress protein compare
PP_4009 -0.8 -2.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_0240 -0.8 -2.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1508 -0.8 -1.9 conserved protein of unknown function compare
PP_4392 -0.8 -4.1 chemotaxis protein methyltransferase compare
PP_5284 -0.8 -2.4 UPF0758 protein PP_5284 compare
PP_4199 -0.8 -0.7 putative Lipoprotein compare
PP_1255 -0.8 -2.3 putative cis-4-hydroxy-D-proline oxidase compare
PP_2304 -0.8 -4.4 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5519 -0.8 -1.0 conserved protein of unknown function of phage origin compare
PP_2197 -0.8 -2.9 conserved exported protein of unknown function compare
PP_1826 -0.8 -1.8 Hydrolase, isochorismatase family compare
PP_0007 -0.8 -1.5 conserved hypothetical protein compare
PP_3840 -0.8 -1.0 conserved protein of unknown function compare
PP_1110 -0.8 -2.3 serine acetyltransferase compare
PP_4159 -0.8 -1.9 Potassium-transporting ATPase C chain compare
PP_3883 -0.8 -2.1 putative Phage holin compare
PP_1493 -0.8 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0949 -0.8 -2.9 putative ATP-binding protein UPF0042 compare
PP_2005 -0.8 -3.1 conserved exported protein of unknown function compare
PP_0069 -0.8 -3.4 putative Rossmann fold nucleotide-binding protein compare
PP_2747 -0.8 -1.7 conserved protein of unknown function compare
PP_4766 -0.8 -2.7 ATP-dependent RNA helicase compare
PP_0827 -0.8 -2.7 putative phosphonate transport system permease protein PtxC compare
PP_0293 -0.8 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5054 -0.8 -1.7 glutaredoxin 3 compare
PP_3769 -0.8 -2.3 conserved exported protein of unknown function compare
PP_4172 -0.8 -2.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 27 genes in this experiment