Experiment set40IT085 for Pseudomonas putida KT2440

Compare to:

P. putida PUT10 MOI 10

200 most important genes:

  gene name fitness t score description  
PP_4099 -7.8 -29.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3627 -7.8 -5.4 conserved protein of unknown function compare
PP_1650 -7.7 -19.3 Sensor protein GacS compare
PP_1774 -7.3 -4.1 conserved exported protein of unknown function compare
PP_0066 -7.2 -7.0 Ribosomal RNA small subunit methyltransferase B compare
PP_0789 -6.7 -4.7 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5114 -6.7 -4.6 putative adenine methyltransferase compare
PP_1627 -6.5 -9.0 conserved protein of unknown function compare
PP_0540 -6.3 -9.6 conserved inner membrane protein compare
PP_4936 -6.2 -7.3 O-antigen polymerase compare
PP_0405 -6.0 -4.2 conserved protein of unknown function compare
PP_4938 -5.9 -11.4 putative Glycosyl transferase compare
PP_1355 -5.9 -8.1 Muropeptide permease AmpG compare
PP_5279 -5.7 -4.0 conserved protein of unknown function compare
PP_4874 -5.7 -3.7 50S ribosomal protein L9 compare
PP_2148 -5.7 -10.9 transcription-repair coupling factor compare
PP_1800 -5.6 -6.7 Oxidoreductase Rmd compare
PP_1776 -5.6 -10.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1663 -5.5 -10.2 conserved exported protein of unknown function compare
PP_1803 -5.4 -10.3 UDP-sugar epimerase compare
PP_0959 -5.3 -3.7 phospholipid ABC transporter compare
PP_1801 -5.2 -10.5 Glycosyl transferase WbpY compare
PP_4726 -5.1 -3.5 Chaperone protein DnaJ compare
PP_0434 -5.0 -6.8 Anhydro-N-acetylmuramic acid kinase compare
PP_0725 -4.9 -3.4 conserved hypothetical TPR repeat protein compare
PP_1802 -4.8 -19.4 glycosyl transferase compare
PP_1805 -4.7 -19.8 Polysaccharide biosynthesis protein compare
PP_1799 -4.7 -15.9 GDP-mannose 4,6-dehydratase compare
PP_1655 -4.6 -9.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1804 -4.6 -10.3 Glycosyl transferase WbpL compare
PP_2145 -4.6 -3.2 beta-N-acetylglucosaminidase compare
PP_1871 -4.6 -6.7 Protease HtpX compare
PP_1777 -4.5 -17.4 phosphomannomutase compare
PP_1780 -4.5 -19.0 putative mannosyltransferase compare
PP_1764 -4.4 -3.1 Phosphoglycolate phosphatase 2 compare
PP_1778 -4.3 -3.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1204 -4.3 -5.8 putative Lipoprotein compare
PP_4720 -4.3 -3.2 putative RNA binding protein compare
PP_0435 -4.3 -6.5 Peptidase, M23/M37 family compare
PP_2029 -4.1 -4.1 von Willebrand factor type A domain protein compare
PP_5283 -4.1 -7.6 periplasmic dipeptide transport protein compare
PP_1798 -4.1 -14.8 Outer membrane efflux protein compare
PP_0406 -4.1 -2.8 Nucleotidyltransferase family protein compare
PP_1036 -4.0 -12.5 membrane-bound lytic murein transglycosylase F compare
PP_4891 -3.7 -7.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1779 -3.6 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5058 -3.6 -6.8 Carboxy-terminal-processing protease compare
PP_5145 -3.6 -18.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2030 -3.4 -5.9 conserved protein of unknown function compare
PP_0937 -3.3 -5.9 endoribonuclease G (RNAse G) compare
PP_1702 -3.3 -4.5 Recombination-associated protein RdgC compare
PP_4171 -3.3 -13.9 conserved exported protein of unknown function compare
PP_1428 -3.2 -3.7 Sigma factor AlgU negative regulatory protein compare
PP_5146 -3.1 -7.4 RNA pyrophosphohydrolase compare
PP_1075 -3.0 -9.1 glycerol kinase compare
PP_1790 -3.0 -3.1 putative Acylneuraminate cytidylyltransferase compare
PP_2031 -3.0 -1.8 conserved protein of unknown function compare
PP_4515 -2.9 -7.7 Transcriptional regulator, MarR family compare
PP_2027 -2.9 -7.3 conserved exported protein of unknown function compare
PP_t49 -2.9 -4.0 tRNA-Met compare
PP_2402 -2.9 -2.0 putative Sensor histidine kinase compare
PP_4217 -2.9 -18.2 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0127 -2.8 -4.2 Thiol:disulfide interchange protein compare
PP_1326 -2.8 -2.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5217 -2.8 -13.1 Polyphosphate kinase compare
PP_2903 -2.7 -2.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1770 -2.7 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4198 -2.6 -5.4 OmpA family protein compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_2163 -2.6 -6.8 VacJ lipoprotein compare
PP_0958 -2.6 -7.7 phospholipid ABC transporter ATP-binding subunit compare
PP_0962 -2.5 -2.9 toluene-tolerance protein compare
PP_0961 -2.5 -5.7 toluene tolerance protein compare
PP_1523 -2.5 -3.4 conserved protein of unknown function compare
PP_0960 -2.5 -4.6 phospholipid ABC transporter binding protein compare
PP_4199 -2.4 -1.3 putative Lipoprotein compare
PP_1215 -2.4 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4892 -2.3 -7.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4944 -2.3 -3.1 Carbamoyltransferase compare
PP_0164 -2.3 -5.6 conserved protein of unknown function compare
PP_1076 -2.2 -6.5 aquaglyceroporin compare
PP_2028 -2.1 -4.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4517 -2.1 -1.7 conserved protein of unknown function compare
PP_0855 -2.1 -3.4 conserved protein of unknown function compare
PP_2820 -2.0 -2.9 HTH-type transcriptional regulator nfxB compare
PP_0948 -2.0 -1.9 Phosphocarrier protein HPr compare
PP_0941 -2.0 -5.6 putative ribosome associated protein compare
PP_2032 -1.9 -5.1 putative ATPase compare
PP_5095 -1.9 -1.2 pyrroline-5-carboxylate reductase compare
PP_3447 -1.9 -1.8 conserved membrane protein of unknown function compare
PP_0872 -1.8 -5.0 Peptide chain release factor 3 compare
PP_4964 -1.8 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1598 -1.8 -4.2 regulatory intramembrane protein RIP zinc protease compare
PP_0346 -1.8 -7.3 putative Heptose kinase WapQ compare
PP_5090 -1.7 -3.7 putative cell division protein compare
PP_5284 -1.7 -3.7 UPF0758 protein PP_5284 compare
PP_0809 -1.7 -6.2 disulfide bond formation protein B compare
PP_0719 -1.7 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1468 -1.6 -1.4 Tyrosine recombinase XerD compare
PP_4971 -1.6 -8.3 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1783 -1.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_1918 -1.6 -7.4 septation protein compare
PP_1789 -1.6 -2.8 Hydrolase, haloacid dehalogenase-like family compare
PP_1654 -1.6 -1.5 cysteine synthase B compare
PP_4529 -1.6 -1.9 conserved protein of unknown function compare
PP_5101 -1.6 -5.0 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_5439 -1.6 -3.8 conserved protein of unknown function compare
PP_1217 -1.6 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1269 -1.5 -1.2 Universal stress protein family compare
PP_5519 -1.5 -3.4 conserved protein of unknown function of phage origin compare
PP_0787 -1.5 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4798 -1.5 -5.5 putative Membrane-bound lytic murein transglycosylase compare
PP_0949 -1.5 -4.5 putative ATP-binding protein UPF0042 compare
PP_1441 -1.4 -3.6 tRNA (cmo5U34)-methyltransferase compare
PP_4495 -1.4 -9.0 aromatic amino acid transport protein compare
PP_5508 -1.4 -1.2 conserved protein of unknown function compare
PP_1797 -1.4 -5.4 HlyD family secretion protein compare
PP_0839 -1.4 -2.4 tRNA Cm32/Um32 methyltransferase compare
PP_4254 -1.4 -1.4 conserved protein of unknown function compare
PP_5113 -1.4 -3.3 predicted Zn-dependent peptidases compare
PP_4981 -1.4 -2.6 polyisoprene-binding protein, acidic stress response factor compare
PP_0794 -1.4 -3.7 1-phosphofructokinase monomer compare
PP_2098 -1.4 -6.8 D-alanyl-D-alanine carboxypeptidase compare
PP_1626 -1.4 -4.4 DNA mismatch repair protein MutS compare
PP_4471 -1.4 -3.0 Magnesium transporter compare
PP_4805 -1.3 -5.4 membrane-bound lytic murein transglycosylase B compare
PP_2299 -1.3 -2.3 Trigger factor compare
PP_5571 -1.3 -1.4 conserved protein of unknown function compare
PP_3808 -1.3 -1.5 Antibiotic synthesis protein MbtH compare
PP_1656 -1.3 -3.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_0035 -1.3 -1.0 putative bactoprenol-linked glycose transferase compare
PP_4980 -1.2 -4.5 ATP-dependent RNA helicase compare
PP_4004 -1.2 -3.5 DNA translocase FtsK compare
PP_4006 -1.2 -4.5 Putative arginyl-tRNA--protein transferase compare
PP_0069 -1.2 -3.7 putative Rossmann fold nucleotide-binding protein compare
PP_1493 -1.2 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1309 -1.2 -3.4 conserved exported protein of unknown function compare
PP_1729 -1.2 -1.3 conserved protein of unknown function compare
PP_0564 -1.2 -5.1 conserved protein of unknown function compare
PP_5583 -1.2 -1.9 conserved protein of unknown function compare
PP_2631 -1.1 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1664 -1.1 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_5533 -1.1 -1.4 conserved protein of unknown function compare
PP_5227 -1.1 -5.0 diaminopimelate decarboxylase compare
PP_3398 -1.1 -2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0775 -1.1 -1.7 conserved protein of unknown function compare
PP_2653 -1.1 -2.5 Transcriptional regulator, Cro/CI family compare
PP_3825 -1.1 -2.7 conserved protein of unknown function compare
PP_5053 -1.1 -4.3 Protein-export protein SecB compare
PP_2005 -1.1 -4.7 conserved exported protein of unknown function compare
PP_5143 -1.1 -2.4 conserved membrane protein of unknown function compare
PP_4490 -1.1 -3.7 phenylalanine-4-hydroxylase compare
PP_3320 -1.1 -2.4 conserved protein of unknown function compare
PP_1279 -1.1 -3.0 Probable alginate O-acetylase AlgJ compare
PP_4570 -1.1 -5.9 conserved protein of unknown function compare
PP_0841 -1.1 -3.9 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4008 -1.1 -3.2 ATP-dependent serine protease compare
PP_5278 -1.0 -3.5 4-guanidinobutyraldehyde dehydrogenase compare
PP_3318 -1.0 -1.7 conserved protein of unknown function compare
PP_3505 -1.0 -1.6 conserved protein of unknown function compare
PP_2341 -1.0 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5270 -1.0 -3.1 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_3241 -1.0 -1.1 conserved exported protein of unknown function compare
PP_1733 -1.0 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4172 -1.0 -2.5 conserved exported protein of unknown function compare
PP_4766 -1.0 -4.2 ATP-dependent RNA helicase compare
PP_5230 -1.0 -2.4 Tyrosine recombinase XerC compare
PP_1791 -1.0 -5.4 putative Aldolase/synthase compare
PP_4470 -1.0 -1.7 putative transcriptional regulator (Arc domain-containing) compare
PP_5223 -1.0 -4.3 regulator of nucleotide diphosphokinase compare
PP_1562 -0.9 -2.0 putative Phage terminase, small subunit compare
PP_4264 -0.9 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1214 -0.9 -1.8 putative transcriptional regulatory protein compare
PP_3990 -0.9 -5.2 substrate or modulator of FtsH-mediated proteolysis compare
PP_4919 -0.9 -4.0 ADP-ribose/sugar pyrophosphatase compare
PP_4009 -0.9 -2.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_2417 -0.9 -2.5 putative Iron ABC transporter, permease protein compare
PP_3768 -0.9 -3.0 putative shikimate 5-dehydrogenase compare
PP_4850 -0.9 -4.0 conserved membrane protein of unknown function compare
PP_0236 -0.9 -2.0 NAD(P)H-dependent FMN reductase subunit compare
PP_1876 -0.9 -2.0 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1826 -0.9 -2.1 Hydrolase, isochorismatase family compare
PP_4173 -0.9 -2.5 Sensor histidine kinase/response regulator compare
PP_1807 -0.9 -4.5 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_1619 -0.8 -3.2 tRNA pseudouridine synthase D compare
PP_2096 -0.8 -4.5 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_2747 -0.8 -1.2 conserved protein of unknown function compare
PP_1524 -0.8 -2.4 23S rRNA m1G745 methyltransferase compare
PP_4489 -0.8 -5.0 sigma-54 dependent transcriptional regulator compare
PP_0042 -0.8 -2.3 conserved exported protein of unknown function compare
PP_1521 -0.8 -1.5 conserved protein of unknown function compare
PP_4785 -0.8 -2.4 conserved exported protein of unknown function compare
PP_4497 -0.8 -3.2 conserved protein of unknown function compare
PP_0007 -0.8 -1.5 conserved hypothetical protein compare
PP_3769 -0.8 -2.3 conserved exported protein of unknown function compare
PP_5313 -0.8 -2.6 DNA-binding protein HU-alpha compare
PP_3884 -0.8 -2.1 Phage holin, lambda family compare
PP_2345 -0.8 -2.5 conserved exported protein of unknown function compare
PP_1109 -0.8 -5.8 Transcriptional regulator, GntR family compare
PP_3378 -0.8 -1.4 putative 2-ketogluconokinase compare


Specific Phenotypes

For 38 genes in this experiment