Experiment set40IT084 for Pseudomonas putida KT2440

Compare to:

P. putida South MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_0789 -6.7 -4.7 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3627 -6.6 -5.8 conserved protein of unknown function compare
PP_0405 -5.9 -7.0 conserved protein of unknown function compare
PP_4099 -5.8 -27.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -5.7 -23.3 Sensor protein GacS compare
PP_4874 -5.7 -3.3 50S ribosomal protein L9 compare
PP_1355 -5.6 -11.3 Muropeptide permease AmpG compare
PP_0540 -5.4 -9.9 conserved inner membrane protein compare
PP_1800 -5.4 -9.0 Oxidoreductase Rmd compare
PP_1801 -5.2 -12.6 Glycosyl transferase WbpY compare
PP_1627 -5.2 -10.1 conserved protein of unknown function compare
PP_4938 -5.2 -12.8 putative Glycosyl transferase compare
PP_2148 -5.1 -14.5 transcription-repair coupling factor compare
PP_0066 -5.1 -9.3 Ribosomal RNA small subunit methyltransferase B compare
PP_1776 -4.9 -15.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2145 -4.7 -3.2 beta-N-acetylglucosaminidase compare
PP_1663 -4.7 -10.2 conserved exported protein of unknown function compare
PP_1805 -4.6 -19.9 Polysaccharide biosynthesis protein compare
PP_0725 -4.6 -5.4 conserved hypothetical TPR repeat protein compare
PP_4199 -4.6 -1.3 putative Lipoprotein compare
PP_1764 -4.5 -3.1 Phosphoglycolate phosphatase 2 compare
PP_1780 -4.5 -19.4 putative mannosyltransferase compare
PP_1803 -4.5 -14.1 UDP-sugar epimerase compare
PP_1802 -4.5 -17.0 glycosyl transferase compare
PP_0435 -4.3 -5.9 Peptidase, M23/M37 family compare
PP_0434 -4.3 -5.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1777 -4.3 -17.2 phosphomannomutase compare
PP_5114 -4.2 -3.2 putative adenine methyltransferase compare
PP_1778 -4.1 -4.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0406 -4.1 -2.8 Nucleotidyltransferase family protein compare
PP_2027 -4.1 -6.8 conserved exported protein of unknown function compare
PP_1655 -4.1 -9.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1779 -4.1 -3.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1799 -4.0 -13.2 GDP-mannose 4,6-dehydratase compare
PP_4936 -4.0 -8.8 O-antigen polymerase compare
PP_1804 -3.9 -9.6 Glycosyl transferase WbpL compare
PP_2029 -3.9 -3.6 von Willebrand factor type A domain protein compare
PP_4726 -3.7 -3.9 Chaperone protein DnaJ compare
PP_0948 -3.7 -1.9 Phosphocarrier protein HPr compare
PP_5279 -3.7 -5.7 conserved protein of unknown function compare
PP_5058 -3.7 -7.0 Carboxy-terminal-processing protease compare
PP_1871 -3.6 -6.5 Protease HtpX compare
PP_5439 -3.6 -6.1 conserved protein of unknown function compare
PP_1798 -3.5 -11.8 Outer membrane efflux protein compare
PP_0794 -3.4 -6.6 1-phosphofructokinase monomer compare
PP_2031 -3.4 -2.1 conserved protein of unknown function compare
PP_1702 -3.3 -5.0 Recombination-associated protein RdgC compare
PP_0164 -3.2 -8.2 conserved protein of unknown function compare
PP_5283 -3.2 -5.6 periplasmic dipeptide transport protein compare
PP_2028 -3.2 -4.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5145 -3.1 -16.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4171 -3.1 -14.5 conserved exported protein of unknown function compare
PP_1075 -3.1 -9.3 glycerol kinase compare
PP_1774 -3.1 -2.2 conserved exported protein of unknown function compare
PP_5706 -2.9 -3.9 Sec translocation complex - SecG subunit compare
PP_4515 -2.9 -5.3 Transcriptional regulator, MarR family compare
PP_5217 -2.9 -11.6 Polyphosphate kinase compare
PP_1770 -2.7 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1036 -2.7 -9.5 membrane-bound lytic murein transglycosylase F compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_0719 -2.5 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4994 -2.4 -3.6 conserved protein of unknown function compare
PP_2163 -2.4 -5.3 VacJ lipoprotein compare
PP_4217 -2.4 -16.2 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4720 -2.4 -1.9 putative RNA binding protein compare
PP_0960 -2.4 -3.8 phospholipid ABC transporter binding protein compare
PP_1523 -2.3 -4.4 conserved protein of unknown function compare
PP_0937 -2.3 -3.9 endoribonuclease G (RNAse G) compare
PP_1076 -2.3 -5.2 aquaglyceroporin compare
PP_4798 -2.3 -7.0 putative Membrane-bound lytic murein transglycosylase compare
PP_1204 -2.3 -4.6 putative Lipoprotein compare
PP_1326 -2.2 -2.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0961 -2.2 -6.1 toluene tolerance protein compare
PP_4892 -2.2 -7.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4136 -2.1 -1.7 Transcriptional regulator, LuxR family compare
PP_2402 -2.1 -2.3 putative Sensor histidine kinase compare
PP_5146 -2.1 -5.5 RNA pyrophosphohydrolase compare
PP_0872 -2.0 -5.9 Peptide chain release factor 3 compare
PP_0691 -2.0 -1.3 Glutamate 5-kinase compare
PP_0958 -1.9 -5.2 phospholipid ABC transporter ATP-binding subunit compare
PP_1237 -1.9 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5095 -1.9 -1.1 pyrroline-5-carboxylate reductase compare
PP_t49 -1.9 -3.4 tRNA-Met compare
PP_2030 -1.8 -3.3 conserved protein of unknown function compare
PP_2414 -1.8 -2.3 conserved exported protein of unknown function compare
PP_1797 -1.8 -6.5 HlyD family secretion protein compare
PP_4355 -1.8 -2.5 flagellar export apparatus subunit compare
PP_4198 -1.8 -4.5 OmpA family protein compare
PP_5495 -1.7 -1.2 protein of unknown function compare
PP_1789 -1.7 -3.6 Hydrolase, haloacid dehalogenase-like family compare
PP_0855 -1.7 -3.2 conserved protein of unknown function compare
PP_1733 -1.7 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_2032 -1.6 -4.7 putative ATPase compare
PP_0787 -1.6 -3.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0959 -1.6 -2.1 phospholipid ABC transporter compare
PP_1898 -1.6 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_1734 -1.6 -3.6 Probable septum site-determining protein MinC compare
PP_0962 -1.6 -2.3 toluene-tolerance protein compare
PP_5143 -1.5 -3.3 conserved membrane protein of unknown function compare
PP_0025 -1.5 -1.7 hypothetical protein compare
PP_1656 -1.5 -5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4342 -1.5 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_0809 -1.5 -5.1 disulfide bond formation protein B compare
PP_0949 -1.5 -4.4 putative ATP-binding protein UPF0042 compare
PP_1918 -1.4 -7.8 septation protein compare
PP_4804 -1.4 -1.9 RlpA-like lipoprotein compare
PP_4835 -1.4 -3.0 conserved exported protein of unknown function compare
PP_4971 -1.4 -7.5 putative Outer membrane-bound lytic murein transglycolase A compare
PP_4009 -1.4 -2.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_2005 -1.4 -3.3 conserved exported protein of unknown function compare
PP_5001 -1.4 -3.0 protease HslVU, ATPase component compare
PP_5597 -1.4 -3.9 conserved protein of unknown function compare
PP_1055 -1.4 -1.3 Type II secretion pathway protein GspN compare
PP_0941 -1.4 -3.3 putative ribosome associated protein compare
PP_4805 -1.4 -6.4 membrane-bound lytic murein transglycosylase B compare
PP_5101 -1.4 -4.7 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_1654 -1.3 -1.7 cysteine synthase B compare
PP_2530 -1.3 -2.4 conserved protein of unknown function compare
PP_5329 -1.3 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4006 -1.3 -6.1 Putative arginyl-tRNA--protein transferase compare
PP_4561 -1.3 -1.1 stress response protein compare
PP_1730 -1.3 -3.1 Probable M18 family aminopeptidase 2 compare
PP_3392 -1.3 -1.1 conserved protein of unknown function compare
PP_0564 -1.3 -6.9 conserved protein of unknown function compare
PP_1513 -1.3 -0.8 Ribosomal RNA small subunit methyltransferase J compare
PP_1790 -1.2 -2.2 putative Acylneuraminate cytidylyltransferase compare
PP_5748 -1.2 -0.6 cytochrome c heme lyase subunit compare
PP_1807 -1.2 -5.0 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_1215 -1.2 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0874 -1.2 -2.1 conserved protein of unknown function compare
PP_1309 -1.2 -3.5 conserved exported protein of unknown function compare
PP_1909 -1.2 -1.9 putative septum formation protein compare
PP_5055 -1.2 -2.8 Sulfurtransferase compare
PP_5270 -1.1 -4.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5582 -1.1 -1.3 conserved protein of unknown function compare
PP_5053 -1.1 -4.1 Protein-export protein SecB compare
PP_4964 -1.1 -2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4499 -1.1 -2.3 putative maturation enzyme compare
PP_4495 -1.1 -6.8 aromatic amino acid transport protein compare
PP_5227 -1.1 -4.5 diaminopimelate decarboxylase compare
PP_1626 -1.1 -3.8 DNA mismatch repair protein MutS compare
PP_4247 -1.1 -1.3 Exonuclease compare
PP_0086 -1.1 -2.7 conserved protein of unknown function compare
PP_2098 -1.1 -5.2 D-alanyl-D-alanine carboxypeptidase compare
PP_5113 -1.1 -3.5 predicted Zn-dependent peptidases compare
PP_3241 -1.1 -1.1 conserved exported protein of unknown function compare
PP_4902 -1.1 -1.6 Oligoribonuclease compare
PP_1186 -1.0 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_3204 -1.0 -3.1 conserved protein of unknown function compare
PP_2299 -1.0 -1.8 Trigger factor compare
PP_1783 -1.0 -1.4 dTDP-glucose pyrophosphorylase compare
PP_0127 -1.0 -1.8 Thiol:disulfide interchange protein compare
PP_4517 -1.0 -1.2 conserved protein of unknown function compare
PP_4570 -1.0 -5.9 conserved protein of unknown function compare
PP_1763 -1.0 -1.5 putative oxidoreductase compare
PP_2118 -1.0 -1.9 conserved protein of unknown function compare
PP_4875 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_1268 -1.0 -1.8 putative HtrA suppressor protein sohA compare
PP_2937 -1.0 -3.5 putative Integrase compare
PP_4004 -1.0 -2.2 DNA translocase FtsK compare
PP_5557 -0.9 -1.8 protein of unknown function compare
PP_2950 -0.9 -2.5 conserved protein of unknown function compare
PP_2878 -0.9 -1.7 conserved protein of unknown function compare
PP_4172 -0.9 -3.1 conserved exported protein of unknown function compare
PP_4897 -0.9 -1.4 N-acetylmuramoyl-L-alanine amidase compare
PP_5284 -0.9 -2.4 UPF0758 protein PP_5284 compare
PP_4891 -0.9 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5686 -0.9 -2.4 protein of unknown function compare
PP_4132 -0.9 -2.7 conserved protein of unknown function compare
PP_1571 -0.9 -2.6 conserved protein of unknown function compare
PP_0839 -0.9 -2.7 tRNA Cm32/Um32 methyltransferase compare
PP_2619 -0.9 -2.8 FHA domain protein compare
PP_5473 -0.9 -0.8 putative transcriptional regulator, LuxR family compare
PP_4980 -0.9 -2.7 ATP-dependent RNA helicase compare
PP_3773 -0.9 -1.4 conserved protein of unknown function compare
PP_4531 -0.9 -2.3 conserved exported protein of unknown function compare
PP_1214 -0.9 -1.0 putative transcriptional regulatory protein compare
PP_5278 -0.9 -2.3 4-guanidinobutyraldehyde dehydrogenase compare
PP_4490 -0.9 -3.4 phenylalanine-4-hydroxylase compare
PP_1004 -0.9 -1.6 conserved protein of unknown function compare
PP_5313 -0.9 -2.0 DNA-binding protein HU-alpha compare
PP_0042 -0.9 -2.1 conserved exported protein of unknown function compare
PP_2653 -0.9 -1.9 Transcriptional regulator, Cro/CI family compare
PP_5698 -0.9 -2.7 conserved exported protein of unknown function compare
PP_5086 -0.8 -3.6 putative nuclease (SNase domain protein) compare
PP_0048 -0.8 -1.2 conserved protein of unknown function compare
PP_4094 -0.8 -1.1 conserved protein of unknown function compare
PP_5161 -0.8 -2.2 putative lysophospholipase compare
PP_4489 -0.8 -4.6 sigma-54 dependent transcriptional regulator compare
PP_4981 -0.8 -2.1 polyisoprene-binding protein, acidic stress response factor compare
PP_0928 -0.8 -4.8 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_4850 -0.8 -2.9 conserved membrane protein of unknown function compare
PP_5640 -0.8 -2.3 conserved protein of unknown function compare
PP_2847 -0.8 -1.1 Urease accessory protein UreJ compare
PP_4313 -0.8 -2.1 putative peptidylprolyl isomerase compare
PP_3884 -0.8 -2.8 Phage holin, lambda family compare
PP_0566 -0.8 -1.0 translation-related factor compare
PP_3243 -0.8 -2.3 Acetyltransferase, GNAT family compare
PP_2070 -0.8 -1.4 Transcriptional regulator, AraC family compare
PP_4180 -0.8 -2.2 conserved protein of unknown function compare


Specific Phenotypes

For 27 genes in this experiment