Experiment set40IT084 for Pseudomonas putida KT2440

Compare to:

P. putida South MOI 0.1

200 most detrimental genes:

  gene name fitness t score description  
PP_4940 +4.0 28.1 Putative glycosyltransferase compare
PP_3821 +3.9 29.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4939 +3.7 12.2 conserved protein of unknown function compare
PP_4710 +3.1 17.9 tRNA pseudouridine 55 synthase compare
PP_4943 +2.8 9.5 putative Glycosyl transferase compare
PP_4722 +2.8 16.4 Transcription elongation factor GreA compare
PP_0063 +2.5 12.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0345 +2.4 9.5 putative Heptose kinase WapP compare
PP_0123 +2.4 16.4 DNA polymerase I, 5 compare
PP_4379 +2.4 9.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0547 +2.2 13.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0832 +2.2 8.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1362 +2.2 8.6 pyruvate kinase II compare
PP_0846 +2.1 2.8 DnaK-like molecular chaperone specific for IscU compare
PP_1994 +2.1 5.5 tRNA pseudouridine (38-40)synthase compare
PP_4937 +2.0 4.4 toluene tolerance protein compare
PP_0214 +2.0 10.1 4-aminobutyrate aminotransferase compare
PP_1099 +2.0 6.5 Cold shock protein CapB compare
PP_2379 +1.9 7.0 putative cytochrome oxidase biogenesis protein compare
PP_5028 +1.9 9.7 proline iminopeptidase compare
PP_0246 +1.9 5.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_4265 +1.9 4.5 DNA-binding transcriptional dual regulator compare
PP_5350 +1.9 8.2 Transcriptional regulator, RpiR family compare
PP_2319 +1.9 11.2 conserved protein of unknown function compare
PP_4942 +1.8 3.0 conserved protein of unknown function compare
PP_4824 +1.8 9.3 Sensor histidine kinase/response regulator compare
PP_4532 +1.7 4.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2160 +1.7 6.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4700 +1.7 5.4 pantothenate synthetase compare
PP_1786 +1.7 13.1 putative Glycosyl transferase compare
PP_1325 +1.6 9.5 putative lipoprotein compare
PP_0439 +1.6 5.7 conserved protein of unknown function compare
PP_4122 +1.6 2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1322 +1.6 1.6 putative Lipoprotein compare
PP_2302 +1.6 6.9 DNA-binding, ATP-dependent protease compare
PP_4546 +1.6 7.0 ATP-dependent helicase HrpA compare
PP_4989 +1.5 5.4 Protein PilJ compare
PP_4787 +1.5 3.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0674 +1.5 10.9 ADP/ATP ratio sensor and inhibitor of translation compare
PP_5294 +1.5 7.4 Ribonuclease PH compare
PP_3957 +1.5 12.1 choline/carnitine/betaine transporter BetTC compare
PP_1366 +1.5 2.1 Transcriptional regulator MvaT, P16 subunit compare
PP_t12 +1.5 1.8 tRNA-Thr compare
PP_2144 +1.4 4.2 Transcriptional regulator, TetR family compare
PP_1795 +1.4 9.9 conserved protein of unknown function compare
PP_1226 +1.4 5.8 pre-queuosine 0 synthase compare
PP_0003 +1.4 4.7 16S RNA methyltransferase compare
PP_2929 +1.4 7.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0339 +1.4 4.3 Pyruvate dehydrogenase E1 component compare
PP_2088 +1.4 4.1 RNA polymerase sigma factor SigX compare
PP_4475 +1.4 7.6 succinylglutamate desuccinylase compare
PP_4829 +1.4 2.6 putative precorrin-3B synthase compare
PP_4121 +1.3 6.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0963 +1.3 3.5 putative BolA family protein compare
PP_0393 +1.3 4.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5178 +1.3 7.7 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_4699 +1.3 4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0065 +1.3 3.6 NAD-binding component of TrK potassium transporter compare
PP_4124 +1.2 5.1 NADH-quinone oxidoreductase subunit G compare
PP_4684 +1.2 6.5 conserved protein of unknown function with kinase-like domain compare
PP_0888 +1.2 2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_4917 +1.2 4.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2462 +1.2 2.8 conserved protein of unknown function compare
PP_1320 +1.2 6.6 stringent starvation protein A compare
PP_5508 +1.2 1.9 conserved protein of unknown function compare
PP_0247 +1.2 8.0 Osmolarity sensor protein EnvZ compare
PP_0274 +1.2 2.8 putative transcriptional regulator containing HTH domain compare
PP_1022 +1.2 5.1 glucose 6-phosphate-1-dehydrogenase compare
PP_2136 +1.2 4.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1190 +1.2 6.0 conserved protein of unknown function compare
PP_0513 +1.2 3.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4268 +1.1 1.2 nucleoid-associated broad specificity regulator compare
PP_5064 +1.1 7.2 choline dehydrogenase compare
PP_4811 +1.1 3.9 Gamma-glutamyl phosphate reductase compare
PP_5328 +1.1 3.1 putative phosphate transport system permease protein compare
PP_4925 +1.1 2.7 conserved protein of unknown function compare
PP_4131 +1.1 5.1 NADH-quinone oxidoreductase subunit N compare
PP_1225 +1.1 3.9 7-carboxy-7-deazaguanine synthase compare
PP_4654 +1.1 7.0 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_1142 +1.1 1.5 conserved protein of unknown function compare
PP_1553 +1.1 2.8 conserved protein of unknown function compare
PP_4130 +1.1 3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4653 +1.1 6.3 adenine:H+ symporter compare
PP_5338 +1.1 2.6 aspartate ammonia-lyase compare
PP_t11 +1.1 2.9 tRNA-Lys compare
PP_0697 +1.1 5.4 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4988 +1.1 4.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4859 +1.1 3.0 Transcriptional regulator, TetR family compare
PP_1374 +1.0 3.2 conserved protein of unknown function compare
PP_3840 +1.0 1.8 conserved protein of unknown function compare
PP_0190 +1.0 5.2 putative disulfide bond formation protein B compare
PP_1808 +1.0 2.2 glucose-6-phosphate isomerase compare
PP_2928 +1.0 6.4 Saccharopine dehydrogenase compare
PP_5248 +1.0 2.0 putative hydrolase compare
PP_5179 +1.0 5.2 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_4129 +1.0 2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3726 +1.0 0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_1364 +1.0 5.6 conserved exported protein of unknown function compare
PP_0058 +1.0 7.2 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1045 +1.0 2.0 Type II secretion pathway protein XcpP compare
PP_1198 +0.9 2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2214 +0.9 3.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1439 +0.9 2.0 conserved exported protein of unknown function compare
PP_1370 +0.9 5.4 Glycosyl transferase, group 1 family protein compare
PP_3891 +0.9 2.1 conserved protein of unknown function compare
PP_2615 +0.9 1.6 hemolysin-coregulated protein compare
PP_0440 +0.9 2.6 Elongation factor Tu-A compare
PP_0368 +0.9 7.3 putative Acyl-CoA dehydrogenase compare
PP_2044 +0.9 1.8 conserved inner membrane protein of unknown function compare
PP_2073 +0.9 1.9 Acetyltransferase, GNAT family compare
PP_0062 +0.9 2.7 3-methyl-adenine DNA glycosylase I compare
PP_4507 +0.9 6.1 potassium transporter compare
PP_3635 +0.9 4.9 putative Sulfonate ABC transporter, permease protein compare
PP_4941 +0.9 2.0 conserved exported protein of unknown function compare
PP_5063 +0.9 3.1 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_2122 +0.9 2.6 molybdenum cofactor biosynthesis protein B compare
PP_0195 +0.9 2.6 conserved protein of unknown function compare
PP_1352 +0.9 3.0 UPF0234 protein PP_1352 compare
PP_2107 +0.9 1.5 conserved protein of unknown function compare
PP_2223 +0.9 5.9 conserved protein of unknown function compare
PP_4721 +0.9 4.2 conserved membrane protein of unknown function compare
PP_2514 +0.9 3.0 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_1576 +0.9 4.5 putative Immunity protein compare
PP_1793 +0.9 7.4 Glycosyl transferase, group 2 family protein compare
PP_1368 +0.9 3.4 putative membrane protein containing a glycosyltransferase domain compare
PP_5177 +0.9 4.2 spermidine/putrescine ABC transporter - permease subunit compare
PP_5204 +0.8 4.6 conserved protein of unknown function compare
PP_4803 +0.8 3.6 D-alanyl-D-alanine carboxypeptidase compare
PP_5216 +0.8 1.7 exopolyphosphatase compare
PP_3935 +0.8 2.8 conserved protein of unknown function compare
PP_5025 +0.8 6.0 Glucans biosynthesis glucosyltransferase H compare
PP_2442 +0.8 1.7 conserved protein of unknown function, DUF480 family compare
PP_5181 +0.8 5.5 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_1185 +0.8 4.6 Outer membrane protein H1 compare
PP_3902 +0.8 2.6 conserved protein of unknown function compare
PP_3143 +0.8 3.5 Transcriptional regulator, LysR family compare
PP_2081 +0.8 3.2 putative phosphoenolpyruvate synthase regulatory protein compare
PP_5007 +0.8 1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0624 +0.8 4.2 Uncharacterized protein YfiH compare
PP_4957 +0.8 2.7 conserved protein of unknown function compare
PP_1324 +0.8 3.0 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_3036 +0.8 3.6 conserved protein of unknown function compare
PP_3286 +0.8 3.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4900 +0.8 5.2 epoxyqueuosine reductase compare
PP_1128 +0.8 1.8 OmpA family protein compare
PP_2449 +0.8 3.8 conserved protein of unknown function compare
PP_1363 +0.8 4.4 conserved protein of unknown function compare
PP_1310 +0.8 1.7 conserved hypothetical protein compare
PP_5180 +0.8 4.5 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_4860 +0.8 6.0 putative Mannose-6-phosphate isomerase compare
PP_1001 +0.8 2.3 arginine deiminase compare
PP_5303 +0.8 3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0921 +0.8 2.9 Transcriptional regulator, ArsR family compare
PP_4769 +0.8 3.1 conserved protein of unknown function compare
PP_1371 +0.8 2.7 Methyl-accepting chemotaxis protein PctA compare
PP_4015 +0.8 3.5 HflD-like high frequency lysogenization protein compare
PP_1995 +0.8 3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3332 +0.8 2.5 putative cytochrome c-type protein compare
PP_4909 +0.8 3.8 phosphoserine phosphatase compare
PP_4880 +0.8 4.9 exoribonuclease R compare
PP_1917 +0.8 3.5 4-amino-4-deoxychorismate lyase compare
PP_4120 +0.8 2.3 NADH-quinone oxidoreductase subunit B compare
PP_0666 +0.7 2.7 conserved protein of unknown function compare
PP_2142 +0.7 2.3 Cell division inhibitor SulA compare
PP_5027 +0.7 1.4 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5000 +0.7 1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_3532 +0.7 1.4 Transcriptional regulator, AsnC family compare
PP_5322 +0.7 3.8 putative metal ion transporter compare
PP_5499 +0.7 2.9 conserved protein of unknown function compare
PP_0984 +0.7 2.7 conserved membrane protein of unknown function compare
PP_4910 +0.7 1.9 conserved protein of unknown function compare
PP_4946 +0.7 4.4 sodium/L-proline transporter compare
PP_5327 +0.7 2.5 putative phosphate ABC transporter, permease subunit compare
PP_0504 +0.7 3.8 Outer membrane protein OprG compare
PP_0628 +0.7 3.4 conserved protein of unknown function compare
PP_5085 +0.7 4.3 malic enzyme B compare
PP_5236 +0.7 4.4 conserved protein of unknown function compare
PP_3899 +0.7 1.8 conserved protein of unknown function, hicB family compare
PP_2336 +0.7 2.8 aconitate hydratase 1 compare
PP_5475 +0.7 0.7 conserved protein of unknown function compare
PP_4660 +0.7 2.1 Transcriptional regulator, LysR family compare
PP_3192 +0.7 1.8 conserved protein of unknown function compare
PP_1367 +0.7 3.0 formyltetrahydrofolate hydrolase compare
PP_2169 +0.7 3.4 tRNA-dihydrouridine synthase A compare
PP_5702 +0.7 2.8 conserved protein of unknown function compare
PP_3539 +0.7 2.4 putative Transcriptional regulator compare
PP_3144 +0.7 3.4 L-serine dehydratase compare
PP_t10 +0.7 1.5 tRNA-Pro compare
PP_2121 +0.7 2.0 putative Lipoprotein compare
PP_2616 +0.7 3.1 conserved protein of unknown function compare
PP_1845 +0.7 3.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_1787 +0.7 2.9 conserved protein of unknown function compare
PP_1589 +0.7 4.1 uridylyltransferase compare
PP_0182 +0.7 3.0 conserved protein of unknown function compare
PP_2460 +0.7 3.6 ribonucleoside hydrolase compare
PP_3415 +0.7 3.2 Transcriptional regulator, LacI family compare
PP_2253 +0.7 1.5 Transcriptional regulator, GntR family compare
PP_2475 +0.7 2.7 Transcriptional regulator, TetR family compare
PP_4356 +0.7 1.1 Flagellar protein FliO compare
PP_5094 +0.7 2.5 putative enzyme with PLP binding domain compare


Specific Phenotypes

For 27 genes in this experiment