Experiment set40IT083 for Pseudomonas putida KT2440

Compare to:

P. putida South MOI 0.1

200 most important genes:

  gene name fitness t score description  
PP_1774 -7.2 -3.9 conserved exported protein of unknown function compare
PP_0066 -6.9 -8.2 Ribosomal RNA small subunit methyltransferase B compare
PP_1627 -6.6 -7.9 conserved protein of unknown function compare
PP_0789 -6.6 -4.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5114 -6.6 -4.6 putative adenine methyltransferase compare
PP_0540 -6.3 -8.6 conserved inner membrane protein compare
PP_4099 -6.0 -27.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -5.9 -29.5 Sensor protein GacS compare
PP_1355 -5.7 -8.8 Muropeptide permease AmpG compare
PP_4936 -5.7 -8.7 O-antigen polymerase compare
PP_1803 -5.6 -7.7 UDP-sugar epimerase compare
PP_1776 -5.6 -10.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4874 -5.6 -3.4 50S ribosomal protein L9 compare
PP_3627 -5.5 -6.2 conserved protein of unknown function compare
PP_0405 -5.1 -12.0 conserved protein of unknown function compare
PP_4726 -5.0 -3.4 Chaperone protein DnaJ compare
PP_1801 -5.0 -11.1 Glycosyl transferase WbpY compare
PP_0434 -4.9 -7.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1799 -4.9 -16.2 GDP-mannose 4,6-dehydratase compare
PP_1777 -4.8 -15.8 phosphomannomutase compare
PP_5279 -4.7 -6.5 conserved protein of unknown function compare
PP_1800 -4.7 -11.3 Oxidoreductase Rmd compare
PP_1802 -4.7 -19.3 glycosyl transferase compare
PP_1663 -4.5 -8.1 conserved exported protein of unknown function compare
PP_1770 -4.5 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4199 -4.5 -1.4 putative Lipoprotein compare
PP_1804 -4.5 -9.5 Glycosyl transferase WbpL compare
PP_1871 -4.4 -7.9 Protease HtpX compare
PP_2148 -4.3 -12.7 transcription-repair coupling factor compare
PP_0948 -4.3 -1.9 Phosphocarrier protein HPr compare
PP_1805 -4.3 -18.7 Polysaccharide biosynthesis protein compare
PP_1778 -4.3 -3.0 Lipopolysaccharide ABC export system, permease protein compare
PP_0725 -4.2 -6.4 conserved hypothetical TPR repeat protein compare
PP_1780 -4.2 -20.8 putative mannosyltransferase compare
PP_1523 -4.1 -3.3 conserved protein of unknown function compare
PP_2029 -4.1 -3.4 von Willebrand factor type A domain protein compare
PP_2028 -4.1 -5.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0435 -4.0 -7.2 Peptidase, M23/M37 family compare
PP_1655 -3.9 -9.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1798 -3.7 -10.4 Outer membrane efflux protein compare
PP_4938 -3.7 -8.5 putative Glycosyl transferase compare
PP_1764 -3.6 -4.3 Phosphoglycolate phosphatase 2 compare
PP_0406 -3.6 -3.5 Nucleotidyltransferase family protein compare
PP_1075 -3.6 -10.0 glycerol kinase compare
PP_1204 -3.6 -6.8 putative Lipoprotein compare
PP_1779 -3.5 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2145 -3.4 -4.2 beta-N-acetylglucosaminidase compare
PP_1702 -3.4 -4.6 Recombination-associated protein RdgC compare
PP_2299 -3.4 -3.7 Trigger factor compare
PP_1216 -3.3 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5283 -3.3 -5.6 periplasmic dipeptide transport protein compare
PP_5145 -3.2 -16.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1790 -3.2 -3.2 putative Acylneuraminate cytidylyltransferase compare
PP_2027 -3.2 -6.3 conserved exported protein of unknown function compare
PP_0960 -3.1 -4.3 phospholipid ABC transporter binding protein compare
PP_5058 -3.0 -6.8 Carboxy-terminal-processing protease compare
PP_4171 -3.0 -14.0 conserved exported protein of unknown function compare
PP_1036 -3.0 -10.3 membrane-bound lytic murein transglycosylase F compare
PP_4098 -2.9 -3.8 UvrABC system protein C compare
PP_2163 -2.8 -6.5 VacJ lipoprotein compare
PP_2030 -2.8 -5.9 conserved protein of unknown function compare
PP_1186 -2.8 -2.6 two component system DNA-binding transcriptional dual regulator compare
PP_5217 -2.7 -11.3 Polyphosphate kinase compare
PP_2903 -2.7 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0809 -2.7 -7.5 disulfide bond formation protein B compare
PP_2032 -2.7 -6.5 putative ATPase compare
PP_0164 -2.6 -5.7 conserved protein of unknown function compare
PP_1326 -2.5 -1.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4895 -2.5 -1.7 tRNA dimethylallyltransferase compare
PP_0719 -2.5 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5146 -2.4 -6.9 RNA pyrophosphohydrolase compare
PP_4891 -2.3 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0401 -2.3 -3.3 Ribosomal RNA small subunit methyltransferase A compare
PP_4217 -2.3 -15.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5453 -2.2 -2.9 conserved protein of unknown function compare
PP_5439 -2.2 -5.8 conserved protein of unknown function compare
PP_4804 -2.2 -1.5 RlpA-like lipoprotein compare
PP_2031 -2.2 -2.2 conserved protein of unknown function compare
PP_4515 -2.2 -6.5 Transcriptional regulator, MarR family compare
PP_4008 -2.1 -5.8 ATP-dependent serine protease compare
PP_0959 -2.1 -2.3 phospholipid ABC transporter compare
PP_0962 -2.0 -2.9 toluene-tolerance protein compare
PP_0961 -2.0 -5.2 toluene tolerance protein compare
PP_1513 -2.0 -3.2 Ribosomal RNA small subunit methyltransferase J compare
PP_0941 -1.9 -4.7 putative ribosome associated protein compare
PP_2402 -1.9 -2.2 putative Sensor histidine kinase compare
PP_4964 -1.9 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1654 -1.8 -1.2 cysteine synthase B compare
PP_1076 -1.8 -4.5 aquaglyceroporin compare
PP_0958 -1.8 -4.6 phospholipid ABC transporter ATP-binding subunit compare
PP_4805 -1.8 -8.2 membrane-bound lytic murein transglycosylase B compare
PP_5706 -1.8 -3.1 Sec translocation complex - SecG subunit compare
PP_4798 -1.8 -7.3 putative Membrane-bound lytic murein transglycosylase compare
PP_4268 -1.8 -1.4 nucleoid-associated broad specificity regulator compare
PP_0937 -1.7 -3.5 endoribonuclease G (RNAse G) compare
PP_0127 -1.7 -2.1 Thiol:disulfide interchange protein compare
PP_4018 -1.7 -2.8 Acetyltransferase, GNAT family compare
PP_1909 -1.7 -2.6 putative septum formation protein compare
PP_4570 -1.7 -9.8 conserved protein of unknown function compare
PP_t49 -1.7 -3.1 tRNA-Met compare
PP_2931 -1.6 -2.7 conserved protein of unknown function compare
PP_5143 -1.5 -2.5 conserved membrane protein of unknown function compare
PP_1898 -1.5 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4273 -1.5 -2.0 Transcriptional regulator, MerR family compare
PP_4994 -1.5 -2.4 conserved protein of unknown function compare
PP_5580 -1.5 -1.5 protein of unknown function compare
PP_1797 -1.5 -5.1 HlyD family secretion protein compare
PP_5284 -1.5 -4.1 UPF0758 protein PP_5284 compare
PP_2581 -1.5 -1.7 conserved protein of unknown function compare
PP_2005 -1.5 -5.6 conserved exported protein of unknown function compare
PP_4198 -1.4 -3.5 OmpA family protein compare
PP_1789 -1.4 -3.2 Hydrolase, haloacid dehalogenase-like family compare
PP_1656 -1.4 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_4490 -1.4 -6.8 phenylalanine-4-hydroxylase compare
PP_4529 -1.4 -1.6 conserved protein of unknown function compare
PP_1493 -1.4 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5053 -1.4 -5.2 Protein-export protein SecB compare
PP_4495 -1.3 -8.2 aromatic amino acid transport protein compare
PP_4971 -1.3 -5.9 putative Outer membrane-bound lytic murein transglycolase A compare
PP_5101 -1.3 -4.9 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_1441 -1.3 -4.5 tRNA (cmo5U34)-methyltransferase compare
PP_4009 -1.3 -2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_1807 -1.3 -5.3 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_1635 -1.3 -2.6 DNA-binding response regulator compare
PP_1468 -1.3 -1.7 Tyrosine recombinase XerD compare
PP_1626 -1.3 -4.3 DNA mismatch repair protein MutS compare
PP_1731 -1.3 -2.1 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5113 -1.3 -2.6 predicted Zn-dependent peptidases compare
PP_1309 -1.3 -4.3 conserved exported protein of unknown function compare
PP_4471 -1.2 -2.8 Magnesium transporter compare
PP_1918 -1.2 -6.3 septation protein compare
PP_0691 -1.2 -1.5 Glutamate 5-kinase compare
PP_4980 -1.2 -3.7 ATP-dependent RNA helicase compare
PP_1598 -1.2 -2.7 regulatory intramembrane protein RIP zinc protease compare
PP_4264 -1.2 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_5313 -1.2 -1.6 DNA-binding protein HU-alpha compare
PP_0949 -1.1 -4.3 putative ATP-binding protein UPF0042 compare
PP_4720 -1.1 -1.4 putative RNA binding protein compare
PP_3105 -1.1 -1.1 conserved membrane protein of unknown function compare
PP_5278 -1.1 -3.1 4-guanidinobutyraldehyde dehydrogenase compare
PP_4006 -1.1 -4.3 Putative arginyl-tRNA--protein transferase compare
PP_2947 -1.1 -3.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2203 -1.1 -1.4 conserved protein of unknown function compare
PP_3488 -1.1 -3.6 Sco1/SenC family protein compare
PP_1440 -1.1 -3.0 tRNA (mo5U34)-methyltransferase compare
PP_0069 -1.1 -3.3 putative Rossmann fold nucleotide-binding protein compare
PP_3757 -1.1 -2.5 Chemotaxis protein CheY compare
PP_2274 -1.1 -2.1 conserved protein of unknown function compare
PP_4172 -1.0 -4.3 conserved exported protein of unknown function compare
PP_2414 -1.0 -1.0 conserved exported protein of unknown function compare
PP_1215 -1.0 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_0025 -1.0 -1.3 hypothetical protein compare
PP_5100 -1.0 -1.3 dITP/XTP pyrophosphatase compare
PP_2773 -1.0 -1.4 conserved protein of unknown function compare
PP_0787 -1.0 -2.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0042 -1.0 -2.2 conserved exported protein of unknown function compare
PP_3117 -1.0 -2.5 putative protein involved in error-prone processing of DNA lesions compare
PP_2653 -1.0 -3.5 Transcriptional regulator, Cro/CI family compare
PP_2098 -1.0 -4.3 D-alanyl-D-alanine carboxypeptidase compare
PP_5270 -1.0 -3.6 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4892 -1.0 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5218 -1.0 -2.4 DedA family protein compare
PP_0872 -1.0 -3.2 Peptide chain release factor 3 compare
PP_2880 -1.0 -1.7 Transcriptional regulator, TetR family compare
PP_1217 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1428 -1.0 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_2087 -1.0 -1.5 CmpX protein compare
PP_0928 -1.0 -4.8 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_0293 -0.9 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5621 -0.9 -1.3 protein of unknown function compare
PP_4766 -0.9 -3.7 ATP-dependent RNA helicase compare
PP_4499 -0.9 -2.3 putative maturation enzyme compare
PP_0886 -0.9 -2.7 conserved exported protein of unknown function compare
PP_4902 -0.9 -1.3 Oligoribonuclease compare
PP_0794 -0.9 -2.7 1-phosphofructokinase monomer compare
PP_4835 -0.9 -1.9 conserved exported protein of unknown function compare
PP_2820 -0.9 -1.9 HTH-type transcriptional regulator nfxB compare
PP_0377 -0.9 -1.5 coenzyme PQQ synthesis protein D compare
PP_1562 -0.9 -1.9 putative Phage terminase, small subunit compare
PP_0236 -0.9 -1.3 NAD(P)H-dependent FMN reductase subunit compare
PP_0775 -0.9 -1.3 conserved protein of unknown function compare
PP_5654 -0.9 -1.0 putative phosphotriesterase compare
PP_2722 -0.9 -2.8 conserved protein of unknown function compare
PP_0346 -0.9 -3.3 putative Heptose kinase WapQ compare
PP_4143 -0.9 -1.8 conserved protein of unknown function compare
PP_5644 -0.9 -1.8 conserved membrane protein of unknown function compare
PP_1791 -0.9 -5.0 putative Aldolase/synthase compare
PP_4004 -0.9 -2.4 DNA translocase FtsK compare
PP_5472 -0.9 -2.2 conserved exported protein of unknown function compare
PP_4697 -0.9 -2.4 poly(A) polymerase compare
PP_5000 -0.9 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_5227 -0.9 -3.9 diaminopimelate decarboxylase compare
PP_5329 -0.9 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1111 -0.9 -3.2 putative Synthetase compare
PP_1113 -0.8 -3.6 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1783 -0.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_5557 -0.8 -1.4 protein of unknown function compare
PP_4084 -0.8 -1.7 conserved protein of unknown function compare
PP_0564 -0.8 -3.1 conserved protein of unknown function compare
PP_t57 -0.8 -1.3 tRNA-Arg compare


Specific Phenotypes

For 33 genes in this experiment