Experiment set40IT080 for Pseudomonas putida KT2440

Compare to:

P. putida South MOI 10

200 most important genes:

  gene name fitness t score description  
PP_0540 -5.9 -9.1 conserved inner membrane protein compare
PP_0405 -5.6 -5.5 conserved protein of unknown function compare
PP_0962 -5.6 -3.8 toluene-tolerance protein compare
PP_5279 -5.5 -3.8 conserved protein of unknown function compare
PP_4874 -5.3 -3.1 50S ribosomal protein L9 compare
PP_0022 -5.2 -1.5 hypothetical protein compare
PP_1627 -5.2 -10.1 conserved protein of unknown function compare
PP_1355 -5.1 -10.9 Muropeptide permease AmpG compare
PP_4099 -5.1 -27.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0959 -5.0 -3.3 phospholipid ABC transporter compare
PP_1650 -4.9 -25.9 Sensor protein GacS compare
PP_4726 -4.8 -3.3 Chaperone protein DnaJ compare
PP_1776 -4.5 -14.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2145 -4.4 -3.1 beta-N-acetylglucosaminidase compare
PP_1805 -4.4 -18.2 Polysaccharide biosynthesis protein compare
PP_0949 -4.3 -8.8 putative ATP-binding protein UPF0042 compare
PP_0789 -4.3 -4.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0434 -4.3 -6.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1779 -4.3 -2.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2163 -4.2 -8.4 VacJ lipoprotein compare
PP_1790 -4.1 -2.9 putative Acylneuraminate cytidylyltransferase compare
PP_1804 -4.1 -9.8 Glycosyl transferase WbpL compare
PP_5146 -4.1 -9.5 RNA pyrophosphohydrolase compare
PP_4936 -4.0 -10.0 O-antigen polymerase compare
PP_5328 -4.0 -2.8 putative phosphate transport system permease protein compare
PP_1800 -4.0 -10.5 Oxidoreductase Rmd compare
PP_0435 -3.8 -6.4 Peptidase, M23/M37 family compare
PP_0406 -3.8 -2.6 Nucleotidyltransferase family protein compare
PP_3627 -3.7 -4.9 conserved protein of unknown function compare
PP_1803 -3.6 -10.5 UDP-sugar epimerase compare
PP_2148 -3.6 -10.7 transcription-repair coupling factor compare
PP_2313 -3.6 -2.0 conserved membrane protein of unknown function compare
PP_t49 -3.6 -3.0 tRNA-Met compare
PP_0801 -3.4 -1.7 conserved exported protein of unknown function compare
PP_1801 -3.4 -8.8 Glycosyl transferase WbpY compare
PP_5283 -3.4 -5.8 periplasmic dipeptide transport protein compare
PP_4098 -3.3 -3.6 UvrABC system protein C compare
PP_1778 -3.3 -5.9 Lipopolysaccharide ABC export system, permease protein compare
PP_1774 -3.3 -1.7 conserved exported protein of unknown function compare
PP_1780 -3.3 -15.3 putative mannosyltransferase compare
PP_1799 -3.2 -10.5 GDP-mannose 4,6-dehydratase compare
PP_4938 -3.2 -8.5 putative Glycosyl transferase compare
PP_1802 -3.0 -10.2 glycosyl transferase compare
PP_5533 -3.0 -1.9 conserved protein of unknown function compare
PP_1777 -2.9 -10.4 phosphomannomutase compare
PP_4892 -2.8 -8.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0127 -2.8 -4.0 Thiol:disulfide interchange protein compare
PP_0293 -2.8 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1655 -2.7 -5.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5145 -2.6 -14.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0066 -2.6 -4.0 Ribosomal RNA small subunit methyltransferase B compare
PP_1075 -2.6 -7.6 glycerol kinase compare
PP_0961 -2.6 -5.1 toluene tolerance protein compare
PP_5114 -2.6 -2.2 putative adenine methyltransferase compare
PP_1764 -2.6 -3.4 Phosphoglycolate phosphatase 2 compare
PP_4993 -2.5 -4.9 Glutathione synthetase compare
PP_4997 -2.5 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4570 -2.3 -8.5 conserved protein of unknown function compare
PP_1216 -2.3 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0719 -2.3 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0958 -2.3 -4.7 phospholipid ABC transporter ATP-binding subunit compare
PP_1326 -2.3 -2.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4895 -2.2 -1.5 tRNA dimethylallyltransferase compare
PP_1731 -2.1 -4.2 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2459 -2.1 -1.3 ribose pyranase compare
PP_1871 -2.1 -2.9 Protease HtpX compare
PP_0960 -2.1 -3.9 phospholipid ABC transporter binding protein compare
PP_4891 -2.1 -4.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2087 -2.1 -3.2 CmpX protein compare
PP_0346 -2.1 -5.5 putative Heptose kinase WapQ compare
PP_0794 -2.0 -3.6 1-phosphofructokinase monomer compare
PP_4804 -2.0 -1.4 RlpA-like lipoprotein compare
PP_1215 -1.9 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_2899 -1.9 -1.3 conserved exported protein of unknown function compare
PP_4902 -1.9 -2.2 Oligoribonuclease compare
PP_1309 -1.9 -3.1 conserved exported protein of unknown function compare
PP_1789 -1.9 -3.6 Hydrolase, haloacid dehalogenase-like family compare
PP_1898 -1.9 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_1663 -1.9 -4.9 conserved exported protein of unknown function compare
PP_1739 -1.9 -2.0 conserved membrane protein of unknown function compare
PP_0120 -1.8 -3.5 putative zinc ABC transporter compare
PP_1097 -1.8 -1.2 Methionine--tRNA ligase compare
PP_4171 -1.8 -10.3 conserved exported protein of unknown function compare
PP_4964 -1.8 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4515 -1.8 -4.8 Transcriptional regulator, MarR family compare
PP_2253 -1.7 -1.5 Transcriptional regulator, GntR family compare
PP_5270 -1.7 -3.8 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5216 -1.7 -1.9 exopolyphosphatase compare
PP_2088 -1.7 -1.9 RNA polymerase sigma factor SigX compare
PP_2340 -1.7 -3.1 conserved protein of unknown function compare
PP_1268 -1.7 -2.3 putative HtrA suppressor protein sohA compare
PP_3411 -1.7 -1.8 conserved protein of unknown function compare
PP_2681 -1.7 -1.8 coenzyme PQQ synthesis protein D compare
PP_5014 -1.7 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4720 -1.6 -1.1 putative RNA binding protein compare
PP_0948 -1.6 -1.4 Phosphocarrier protein HPr compare
PP_1770 -1.6 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5095 -1.6 -0.9 pyrroline-5-carboxylate reductase compare
PP_0872 -1.6 -4.1 Peptide chain release factor 3 compare
PP_4829 -1.6 -2.1 putative precorrin-3B synthase compare
PP_0937 -1.5 -4.5 endoribonuclease G (RNAse G) compare
PP_4126 -1.5 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_2090 -1.5 -2.3 Uroporphyrinogen-III C-methyltransferase compare
PP_4910 -1.5 -2.4 conserved protein of unknown function compare
PP_5055 -1.5 -1.8 Sulfurtransferase compare
PP_0833 -1.5 -2.0 queuine tRNA-ribosyltransferase compare
PP_5230 -1.4 -2.2 Tyrosine recombinase XerC compare
PP_2499 -1.4 -1.6 conserved protein of unknown function compare
PP_0393 -1.4 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3318 -1.4 -1.2 conserved protein of unknown function compare
PP_5284 -1.4 -3.5 UPF0758 protein PP_5284 compare
PP_5045 -1.4 -2.8 tRNA sulfurtransferase compare
PP_1783 -1.4 -1.0 dTDP-glucose pyrophosphorylase compare
PP_0289 -1.4 -5.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5143 -1.4 -2.1 conserved membrane protein of unknown function compare
PP_0630 -1.4 -1.1 DNA gyrase inhibitor YacG compare
PP_3409 -1.4 -2.3 putative Cobalamin biosynthesis protein cobE compare
PP_2510 -1.4 -1.6 conserved protein of unknown function compare
PP_4569 -1.4 -3.5 conserved protein of unknown function compare
PP_0809 -1.4 -3.3 disulfide bond formation protein B compare
PP_1076 -1.4 -3.0 aquaglyceroporin compare
PP_5329 -1.3 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1598 -1.3 -2.8 regulatory intramembrane protein RIP zinc protease compare
PP_4470 -1.3 -3.4 putative transcriptional regulator (Arc domain-containing) compare
PP_5278 -1.3 -3.2 4-guanidinobutyraldehyde dehydrogenase compare
PP_1036 -1.3 -4.0 membrane-bound lytic murein transglycosylase F compare
PP_1798 -1.3 -4.7 Outer membrane efflux protein compare
PP_2847 -1.3 -0.9 Urease accessory protein UreJ compare
PP_1656 -1.3 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1454 -1.3 -2.2 conserved protein of unknown function compare
PP_1122 -1.3 -1.5 OmpA family protein compare
PP_5528 -1.3 -1.2 conserved protein of unknown function compare
PP_1918 -1.3 -5.5 septation protein compare
PP_3819 -1.3 -3.9 glutathione reductase (NADPH) compare
PP_4008 -1.3 -3.0 ATP-dependent serine protease compare
PP_1501 -1.3 -2.8 conserved protein of unknown function compare
PP_3052 -1.2 -1.1 conserved protein of unknown function compare
PP_1427 -1.2 -3.8 RNA polymerase sigma E factor compare
PP_1301 -1.2 -4.2 quality control serine endoprotease DegS compare
PP_3768 -1.2 -4.1 putative shikimate 5-dehydrogenase compare
PP_3371 -1.2 -4.3 Sensor histidine kinase compare
PP_2229 -1.2 -1.8 putative K(+)/H(+) antiporter subunit C compare
PP_5621 -1.2 -1.1 protein of unknown function compare
PP_1702 -1.2 -1.9 Recombination-associated protein RdgC compare
PP_0725 -1.2 -3.0 conserved hypothetical TPR repeat protein compare
PP_5227 -1.2 -3.5 diaminopimelate decarboxylase compare
PP_0941 -1.2 -2.1 putative ribosome associated protein compare
PP_2032 -1.2 -2.2 putative ATPase compare
PP_1020 -1.2 -1.6 putative glucose-6-phosphate 1-epimerase compare
PP_4850 -1.2 -2.3 conserved membrane protein of unknown function compare
PP_0001 -1.2 -1.2 probable chromosome-partitioning protein compare
PP_5507 -1.2 -2.1 protein of unknown function compare
PP_5100 -1.2 -1.6 dITP/XTP pyrophosphatase compare
PP_0035 -1.2 -2.0 putative bactoprenol-linked glycose transferase compare
PP_5456 -1.2 -1.5 conserved protein of unknown function compare
PP_2958 -1.2 -1.5 Glutaredoxin compare
PP_0254 -1.1 -1.5 conserved protein of unknown function compare
PP_1909 -1.1 -2.2 putative septum formation protein compare
PP_1626 -1.1 -3.2 DNA mismatch repair protein MutS compare
PP_1629 -1.1 -2.7 Protein RecA compare
PP_4792 -1.1 -1.3 conserved exported protein of unknown function compare
PP_4793 -1.1 -1.8 conserved protein of unknown function compare
PP_3520 -1.1 -3.2 conserved exported protein of unknown function compare
PP_0117 -1.1 -3.0 Zn(2+) ABC transporter - permease subunit compare
PP_2509 -1.1 -3.2 conserved protein of unknown function compare
PP_2816 -1.1 -2.7 putative Transcriptional regulator NfxB compare
PP_2028 -1.1 -2.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4584 -1.1 -2.6 putative endonuclease compare
PP_5628 -1.1 -2.1 conserved protein of unknown function compare
PP_2898 -1.1 -1.4 conserved exported protein of unknown function compare
PP_1410 -1.1 -1.1 conserved protein of unknown function compare
PP_4223 -1.1 -1.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3580 -1.0 -1.5 conserved protein of unknown function compare
PP_0042 -1.0 -2.6 conserved exported protein of unknown function compare
PP_2309 -1.0 -0.9 conserved protein of unknown function compare
PP_0339 -1.0 -2.0 Pyruvate dehydrogenase E1 component compare
PP_5SB -1.0 -2.4 5S ribosomal RNA compare
PP_1673 -1.0 -2.2 cobyrinate a,c-diamide synthase compare
PP_3239 -1.0 -2.1 putative cointegrate resolution protein T Tn4652 compare
PP_4517 -1.0 -0.9 conserved protein of unknown function compare
PP_2292 -1.0 -2.7 conserved protein of unknown function compare
PP_2171 -1.0 -1.6 Transporter, LysE family compare
PP_0118 -1.0 -3.2 zinc import ATP-binding protein compare
PP_1782 -1.0 -2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
PP_2217 -1.0 -1.8 enoyl-CoA hydratase compare
PP_0292 -0.9 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4529 -0.9 -0.9 conserved protein of unknown function compare
PP_0775 -0.9 -1.4 conserved protein of unknown function compare
PP_1733 -0.9 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_5499 -0.9 -0.9 conserved protein of unknown function compare
PP_2503 -0.9 -2.3 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4159 -0.9 -1.1 Potassium-transporting ATPase C chain compare
PP_4701 -0.9 -0.6 glucose-6-phosphate isomerase compare
PP_1797 -0.9 -3.1 HlyD family secretion protein compare
PP_2716 -0.9 -2.2 arsenate reductase compare
PP_2137 -0.9 -0.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_2031 -0.9 -1.4 conserved protein of unknown function compare
PP_0195 -0.9 -1.8 conserved protein of unknown function compare
PP_4217 -0.9 -6.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1131 -0.9 -1.6 outer membrane lipoprotein compare


Specific Phenotypes

For 11 genes in this experiment